Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003585

Physical Location & Seq

Genomic Coordinates Reverse (-)

55559475 .. 55562045

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGACTCAACACACGAGTCTAAGACTCTCCCTTCAACAGCTACTGAAGAAGCTCTCAAACACAATGTATGTGTATCCCAAGGTGAAGGTCAGGCAACAAGAAGAGAAAGATGATCAACATCCACTTCTTGATTTTTCTACTCCAGTGAAGGACCAAGATGTTTCTCCAGCTACTGTTGCAAAAGTTCCAAAATCTTATGTTCCAAGAGTAGTTATGCCATCGATCTCTGTTGCTGAAGGAGCAAAGAAGGCCAATAAGATTGAAGAGATAAATAAACAAAATATTAGAGCCAGCTCAATCCCTCCACCTCGTGCTGTCTTATCCAGTCCTGACAATGATACGGTGATTGGAAACAAAAATAGGATCAAAGCACAACGACCATCTGCTCTGAAGAATCATAGCTTGGTTCAGAATAGAAGTACACCATGTATTCCACTCCACATTACTGAAAACTCCATAAATACAAAAAAATCCAAGGGGACTTTAGTTGAGAACTGTCTTAAGGAAAGGAAAGGATCAGCATCAAAACTAACGAGTCAGATACGGCCATCAAGAACTGGGAAACCAAGCTCTAAGGAAAATAACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.78

Weight (kDa)

10.13

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21865
fragaria_vesca	FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630
malus_domestica	MD16G1226400.v1.1
prunus_persica	Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1
pyrus_communis	pycom16g18960
rosa_chinensis	RchiOBHm_Chr1g0362101 RchiOBHm_Chr4g0395401
rosa_laevigata	RLG00000009625
rosa_multiflora	Rmu_sc0004598.1_g000001 Rmu_sc0010817.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340360
rosa_rugosa	Rorug01G0293700 Rorug03G0357600
rosa_samantha	Rh1AG304400 Rh2BG188400 Rh4AG059600 Rh4BG058100 Rh4CG063600 Rh4DG054700 Rh6AG105300 Rh7AG389000 Rh7CG408200 Rh7DG387000
rosa_wichuraiana	Rw0G003300 Rw0G007660 Rw4G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	371, 523
AcoI	YGGCCR	1 cut(s)	545
AcuI	CTGAAG	3 cut(s)	65, 255, 410
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	421
AflII	CTTAAG	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	35, 263
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	6 cut(s)	40, 52, 170, 294, 402, 570
AluI	AGCT	6 cut(s)	40, 52, 170, 294, 402, 570
AlwI	GGATC	2 cut(s)	371, 523
AlwNI	CAGNNNCTG	2 cut(s)	43, 173
AoxI	GGCC	2 cut(s)	249, 545
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	94, 355
AvaII	GGWCC	1 cut(s)	151
BauI	CACGAG	2 cut(s)	13, 309
BccI	CCATC	3 cut(s)	226, 388, 556
BceAI	ACGGC	1 cut(s)	560
BciVI	GTATCC	1 cut(s)	84
BclI	TGATCA	1 cut(s)	112
BfrI	CTTAAG	1 cut(s)	500
BfuI	GTATCC	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	530
BmuI	ACTGGG	1 cut(s)	567
BpmI	CTGGAG	2 cut(s)	126, 150
Bsa29I	ATCGAT	1 cut(s)	221
BsaBI	GATNNNNATC	2 cut(s)	117, 520
BsaJI	CCNNGG	2 cut(s)	78, 474
Bse1I	ACTGG	3 cut(s)	143, 324, 562
Bse8I	GATNNNNATC	2 cut(s)	117, 520
BseCI	ATCGAT	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	78, 474
BseGI	GGATG	1 cut(s)	118
BseJI	GATNNNNATC	2 cut(s)	117, 520
BseNI	ACTGG	3 cut(s)	143, 324, 562
BshFI	GGCC	2 cut(s)	251, 547
BshVI	ATCGAT	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	251, 547
Bsp143I	GATC	4 cut(s)	112, 222, 363, 515
BspANI	GGCC	2 cut(s)	251, 547
BspDI	ATCGAT	1 cut(s)	221
BspPI	GGATC	2 cut(s)	371, 523
BspTI	CTTAAG	1 cut(s)	500
BsrI	ACTGG	3 cut(s)	143, 324, 562
BssECI	CCNNGG	2 cut(s)	78, 474
BssMI	GATC	4 cut(s)	112, 222, 363, 515
BssSI	CACGAG	2 cut(s)	13, 309
BssT1I	CCWWGG	2 cut(s)	78, 474
Bst2BI	CACGAG	2 cut(s)	13, 309
Bst4CI	ACNGT	3 cut(s)	175, 343, 497
Bst6I	CTCTTC	2 cut(s)	96, 258
BstAFI	CTTAAG	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	20, 573
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	4 cut(s)	115, 225, 366, 518
BstMBI	GATC	4 cut(s)	112, 222, 363, 515
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 239, 248
Bsu15I	ATCGAT	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	251, 547
BsuTUI	ATCGAT	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	292
CaiI	CAGNNNCTG	2 cut(s)	43, 173
Cfr13I	GGNCC	1 cut(s)	151
ClaI	ATCGAT	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	420
CviAII	CATG	1 cut(s)	426
CviJI	RGCY	9 cut(s)	40, 52, 170, 251, 290, 294, 402, 547, 570
CviKI_1	RGCY	9 cut(s)	40, 52, 170, 251, 290, 294, 402, 547, 570
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	2 cut(s)	20, 573
DpnI	GATC	4 cut(s)	114, 224, 365, 517
DpnII	GATC	4 cut(s)	112, 222, 363, 515
DraIII	CACNNNGTG	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	545
Eam1104I	CTCTTC	2 cut(s)	96, 258
EarI	CTCTTC	2 cut(s)	96, 258
Eco130I	CCWWGG	2 cut(s)	78, 474
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	3 cut(s)	65, 255, 410
EcoT14I	CCWWGG	2 cut(s)	78, 474
ErhI	CCWWGG	2 cut(s)	78, 474
FaeI	CATG	1 cut(s)	429
FaiI	YATR	6 cut(s)	69, 198, 215, 399, 427, 458
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	1 cut(s)	425
FbaI	TGATCA	1 cut(s)	112
FokI	GGATG	1 cut(s)	105
GsuI	CTGGAG	2 cut(s)	126, 150
HaeIII	GGCC	2 cut(s)	251, 547
Hin1II	CATG	1 cut(s)	429
HinfI	GANTC	5 cut(s)	4, 16, 24, 394, 535
HphI	GGTGA	2 cut(s)	94, 355
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	390, 411, 540
Hpy188III	TCNNGA	3 cut(s)	128, 329, 552
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	5 cut(s)	41, 79, 142, 230, 241
HpyCH4III	ACNGT	3 cut(s)	175, 343, 497
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 239, 248
HpyF3I	CTNAG	2 cut(s)	20, 573
Hsp92II	CATG	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	112, 222, 363, 515
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	7 cut(s)	76, 156, 180, 304, 337, 342, 543
LweI	GCATC	1 cut(s)	530
MalI	GATC	4 cut(s)	114, 224, 365, 517
MboI	GATC	4 cut(s)	112, 222, 363, 515
MboII	GAAGA	4 cut(s)	58, 113, 275, 403
MlyI	GAGTC	3 cut(s)	18, 25, 544
MnlI	CCTC	2 cut(s)	312, 318
MseI	TTAA	1 cut(s)	501
MspCI	CTTAAG	1 cut(s)	500
MwoI	GCNNNNNNNGC	3 cut(s)	176, 239, 248
NdeII	GATC	4 cut(s)	112, 222, 363, 515
NlaIII	CATG	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	394
PleI	GAGTC	3 cut(s)	18, 24, 543
PpsI	GAGTC	3 cut(s)	18, 24, 543
PspPI	GGNCC	1 cut(s)	151
PstNI	CAGNNNCTG	2 cut(s)	43, 173
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	501
Sau3AI	GATC	4 cut(s)	112, 222, 363, 515
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	3 cut(s)	18, 25, 544
SetI	ASST	9 cut(s)	42, 54, 84, 90, 172, 296, 310, 404, 572
SfaNI	GCATC	1 cut(s)	530
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
SspI	AATATT	1 cut(s)	283
StyI	CCWWGG	2 cut(s)	78, 474
TaaI	ACNGT	3 cut(s)	175, 343, 497
TaqI	TCGA	1 cut(s)	221
TatI	WGTACW	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	150
TspRI	CASTG	1 cut(s)	150
Vha464I	CTTAAG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.