FvH4_4g05450

Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005053
Physical Location & Seq
Reverse (-)
4711954 .. 4712694
741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05450.t1

Sequence Viewer

Length: 741 bp
ATGTTCAAGCAAACATTTTCATCTCTTTTCCTTGTGATGCTACTTGCGAATATGCACACAGCATTTTCAGTTGATCCTGCAGCAGAACCCGTACTTGAATTATATATGCACGACATTCTTGGTGGCAGTAGCCCTACAGCTAGGCCAATCACTGGCTTGCTAGGTAACATCTACAGCAGTCAAGTCCCCTTCGCCAAGCCGATAGGATTCACTGTTCCAAGTAATGGGGTGGCTGTCCCTAATGCCAATGGTGCCATTCCAACTGTAAATGGCGCCACCGGACTCCCACTAGGAACCGGCCTATCTGGAACAGCTTTTGCAGGAAATACAAACGACCAGAACCAGAATGGCAATATCGCAACGCAGCTAGCAGCAGATGGATTGGGGCTGGGATTCGGGACAATCACTGTCATCGATGACATACTGACTTCTAGCCCTGATTTGGGTTCACAAACCCTTGGAAAAGCTCAAGGTATTTATATGGCAAGCTCTGCAGATGGATCAAGACAGCTGATGGCATTTACAGCTATGATGGAAGGAGGGGAGTATAACGATAACCTCAACTTCTTTGGAGTGTACAAGATTGGAAGTACCATGTCACAGTTGTCAGTGACTGGTGGCACAGGTAAGTTTAAGAATGCCAATGGAATCGCAGAGCTGCGACCACTGATTCCTCCAGGCCAACATGCAACTGATGGTGCAGAAACATTACTGAGGGTTACTGTGCACTTGAACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

247

Amino Acids

25.42

Weight (kDa)

4.99

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 117 - 222 3e-24 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 251, 272
AccB7I CCANNNNNTGG 2 cut(s) 152, 224
AclWI GGATC 2 cut(s) 68, 508
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 3 cut(s) 93, 578, 592
AfiI CCNNNNNNNGG 4 cut(s) 152, 224, 442, 443
AgsI TTSAA 3 cut(s) 7, 98, 733
AjnI CCWGG 1 cut(s) 676
AloI GAACNNNNNNTCC 2 cut(s) 198, 230
AluBI AGCT 8 cut(s) 140, 314, 367, 467, 489, 511, 527, 658
AluI AGCT 8 cut(s) 140, 314, 367, 467, 489, 511, 527, 658
Alw21I GWGCWC 1 cut(s) 729
Alw44I GTGCAC 1 cut(s) 725
AlwI GGATC 2 cut(s) 68, 508
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 3 cut(s) 143, 298, 679
ApaLI GTGCAC 1 cut(s) 725
ApeKI GCWGC 4 cut(s) 80, 364, 371, 658
AspLEI GCGC 1 cut(s) 275
AsuNHI GCTAGC 1 cut(s) 367
BaeGI GKGCMC 1 cut(s) 729
BanI GGYRCC 2 cut(s) 251, 272
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 4 cut(s) 92, 376, 383, 645
BccI CCATC 5 cut(s) 371, 491, 508, 526, 689
BciT130I CCWGG 1 cut(s) 678
BfaI CTAG 5 cut(s) 141, 161, 290, 368, 432
BfmI CTRYAG 4 cut(s) 78, 135, 172, 492
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 4 cut(s) 81, 365, 372, 659
BlsI GCNGC 4 cut(s) 82, 366, 373, 660
Bme1390I CCNGG 1 cut(s) 678
BmiI GGNNCC 3 cut(s) 253, 274, 295
BmrFI CCNGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 27
BmtI GCTAGC 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 453
Bsa29I ATCGAT 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 457
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 224, 442, 443
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 157, 619
BseBI CCWGG 1 cut(s) 678
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 457
BseLI CCNNNNNNNGG 4 cut(s) 152, 224, 442, 443
BseMII CTCAG 1 cut(s) 704
BseNI ACTGG 2 cut(s) 157, 619
BseSI GKGCMC 1 cut(s) 729
BseXI GCAGC 4 cut(s) 92, 376, 383, 645
BseYI CCCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 3 cut(s) 145, 300, 681
BshNI GGYRCC 2 cut(s) 251, 272
BshVI ATCGAT 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 729
BsiSI CCGG 2 cut(s) 279, 297
BslFI GGGAC 3 cut(s) 170, 221, 412
BslI CCNNNNNNNGG 4 cut(s) 152, 224, 442, 443
BsmFI GGGAC 3 cut(s) 170, 221, 412
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 3 cut(s) 145, 300, 681
Bsp1286I GDGCHC 1 cut(s) 729
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 2 cut(s) 73, 500
BspANI GGCC 3 cut(s) 145, 300, 681
BspCNI CTCAG 1 cut(s) 705
BspDI ATCGAT 1 cut(s) 414
BspLI GGNNCC 3 cut(s) 253, 274, 295
BspMAI CTGCAG 2 cut(s) 82, 496
BspOI GCTAGC 1 cut(s) 371
BspPI GGATC 2 cut(s) 68, 508
BspT107I GGYRCC 2 cut(s) 251, 272
BsrFI RCCGGY 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 2 cut(s) 157, 619
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 2 cut(s) 73, 500
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 5 cut(s) 214, 265, 409, 603, 724
BstACI GRCGYC 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 491
BstAUI TGTACA 1 cut(s) 576
BstC8I GCNNGC 3 cut(s) 158, 369, 487
BstDEI CTNAG 1 cut(s) 713
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 2 cut(s) 76, 503
BstMBI GATC 2 cut(s) 73, 500
BstMWI GCNNNNNNNGC 3 cut(s) 251, 491, 524
BstNI CCWGG 1 cut(s) 678
BstNSI RCATGY 1 cut(s) 689
BstSCI CCNGG 1 cut(s) 676
BstSFI CTRYAG 4 cut(s) 78, 135, 172, 492
BstSLI GKGCMC 1 cut(s) 729
BstV1I GCAGC 4 cut(s) 92, 376, 383, 645
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 3 cut(s) 145, 300, 681
BsuTUI ATCGAT 1 cut(s) 414
BtsIMutI CAGTG 5 cut(s) 150, 210, 405, 615, 665
Cac8I GCNNGC 3 cut(s) 158, 369, 487
CaiI CAGNNNCTG 1 cut(s) 614
CfoI GCGC 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 414
Csp6I GTAC 3 cut(s) 92, 577, 591
CviAII CATG 2 cut(s) 595, 686
CviQI GTAC 3 cut(s) 92, 577, 591
DdeI CTNAG 1 cut(s) 713
DinI GGCGCC 1 cut(s) 274
DpnI GATC 2 cut(s) 75, 502
DpnII GATC 2 cut(s) 73, 500
Eco130I CCWWGG 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 457
EgeI GGCGCC 1 cut(s) 274
EheI GGCGCC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 2 cut(s) 598, 689
FaqI GGGAC 3 cut(s) 170, 221, 412
FatI CATG 2 cut(s) 594, 685
Fnu4HI GCNGC 4 cut(s) 81, 365, 372, 659
Fsp4HI GCNGC 4 cut(s) 81, 365, 372, 659
FspBI CTAG 5 cut(s) 141, 161, 290, 368, 432
GlaI GCGC 1 cut(s) 274
GluI GCNGC 4 cut(s) 81, 365, 372, 659
GsaI CCCAGC 1 cut(s) 392
GsuI CTGGAG 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 3 cut(s) 145, 300, 681
HapII CCGG 2 cut(s) 279, 297
HhaI GCGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 2 cut(s) 598, 689
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 5 cut(s) 207, 282, 393, 648, 670
HpaII CCGG 2 cut(s) 279, 297
Hpy166II GTNNAC 3 cut(s) 449, 577, 727
Hpy188III TCNNGA 3 cut(s) 306, 397, 504
Hpy8I GTNNAC 3 cut(s) 449, 577, 727
HpyAV CCTTC 2 cut(s) 199, 530
HpyCH4III ACNGT 5 cut(s) 214, 265, 409, 603, 724
HpyCH4V TGCA 8 cut(s) 55, 80, 109, 320, 494, 689, 701, 727
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 491, 524
HpyF3I CTNAG 1 cut(s) 713
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 2 cut(s) 598, 689
HspAI GCGC 1 cut(s) 273
KasI GGCGCC 1 cut(s) 272
Kzo9I GATC 2 cut(s) 73, 500
Lsp1109I GCAGC 4 cut(s) 92, 376, 383, 645
LweI GCATC 1 cut(s) 27
MaeI CTAG 5 cut(s) 141, 161, 290, 368, 432
MaeIII GTNAC 4 cut(s) 164, 597, 610, 718
MalI GATC 2 cut(s) 75, 502
MboI GATC 2 cut(s) 73, 500
MhlI GDGCHC 1 cut(s) 729
MluCI AATT 1 cut(s) 98
Mly113I GGCGCC 1 cut(s) 273
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 4 cut(s) 533, 569, 684, 708
MseI TTAA 1 cut(s) 633
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 2 cut(s) 279, 297
MspR9I CCNGG 1 cut(s) 678
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 678
MwoI GCNNNNNNNGC 3 cut(s) 251, 491, 524
NarI GGCGCC 1 cut(s) 273
NdeII GATC 2 cut(s) 73, 500
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 2 cut(s) 598, 689
NlaIV GGNNCC 3 cut(s) 253, 274, 295
NmuCI GTSAC 2 cut(s) 597, 610
NspI RCATGY 1 cut(s) 689
PctI GAATGC 1 cut(s) 643
PfeI GAWTC 4 cut(s) 207, 393, 648, 670
PflMI CCANNNNNTGG 2 cut(s) 152, 224
PkrI GCNGC 4 cut(s) 82, 366, 373, 660
PleI GAGTC 1 cut(s) 276
PluTI GGCGCC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 676
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 3 cut(s) 253, 274, 295
PstI CTGCAG 2 cut(s) 82, 496
PstNI CAGNNNCTG 1 cut(s) 614
PvuII CAGCTG 1 cut(s) 511
RsaI GTAC 3 cut(s) 93, 578, 592
RsaNI GTAC 3 cut(s) 92, 577, 591
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 4 cut(s) 81, 365, 372, 659
Sau3AI GATC 2 cut(s) 73, 500
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 678
SduI GDGCHC 1 cut(s) 729
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 4 cut(s) 78, 135, 172, 492
SfoI GGCGCC 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 1 cut(s) 98
SspDI GGCGCC 1 cut(s) 272
SspMI CTAG 5 cut(s) 141, 161, 290, 368, 432
StyD4I CCNGG 1 cut(s) 676
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 5 cut(s) 214, 265, 409, 603, 724
TaqI TCGA 1 cut(s) 414
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 4 cut(s) 207, 393, 648, 670
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 5 cut(s) 157, 217, 412, 615, 672
TseFI GTSAC 2 cut(s) 597, 610
TseI GCWGC 4 cut(s) 80, 364, 371, 658
Tsp45I GTSAC 2 cut(s) 597, 610
TspDTI ATGAA 1 cut(s) 9
TspRI CASTG 5 cut(s) 157, 217, 412, 615, 672
Van91I CCANNNNNTGG 2 cut(s) 152, 224
VneI GTGCAC 1 cut(s) 725
XceI RCATGY 1 cut(s) 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XspI CTAG 5 cut(s) 141, 161, 290, 368, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.