Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010969.1

Orthogroup ID

OG0005053

Physical Location & Seq

Genomic Coordinates Forward (+)

17313 .. 18065

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010969.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggtcaagcaattatcatccgtctattccattttgctctctattctatttgcctcagtccatgtactactggtcaatgcagcagttgacccagtcagggccagtgaacatgaaccaattcttgagatgtacatgcatgatattcttgggggcagcagcccaacagctaggcctataactggtctgctaggcaacatctatggaggtcaagttccctttgcaaagccaatagggttccttcccccacaaggtggtgttcccatccccaatgccaatggtgccctccctactgtcaatggcatcaatgggatccctcttggaaccggcttgtccggcacaacgttttcgggaaagcccattgggcaggcccagacccagttgggccctgatggtctgagcctgggcttcggcactatcactgtcattgatgacattctcaccacagcacctgagctagggtcacagagtattggtaaagcacaaggggtttatgtggcaagttcagcagatgggtcaagacagatgatggcattcactgctatgattgaaggaggtgagtatggtgatagtctcaacttctatggtgtgtttaagattggaagcccaatgtcacatttgtctgtgactggagggactgggaagttcaagagtgctagtggttttgctgaggtgagatcactaatccctcctggtcaacatattactgatggtgcagagactctgctgaggatcatcgtacatctaagctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

250

Amino Acids

25.76

Weight (kDa)

5.81

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24020 AT4G13580
fragaria_vesca	FvH4_4g05450 FvH4_4g05460
malus_domestica	MD13G1229800.v1.1 MD13G1229900.v1.1 MD13G1230100.v1.1
prunus_persica	Prupe.1G056700_v2.0.a1 Prupe.1G056800_v2.0.a1
pyrus_communis	pycom13g20250
rosa_chinensis	RchiOBHm_Chr4g0396611 RchiOBHm_Chr4g0396621
rosa_laevigata	RLG00000009515 RLG00000009516
rosa_multiflora	Rmu_co8415101.1_g000001 Rmu_sc0006586.1_g000021 Rmu_sc0006586.1_g000023 Rmu_sc0010969.1_g000003 Rmu_sc0010969.1_g000005
rosa_roxburghii	Rroxscaffold_5G00341470 Rroxscaffold_5G00341490
rosa_rugosa	Rorug03G0348300 Rorug03G0348400
rosa_samantha	Rh4BG068700 Rh4BG068900 Rh4CG076500 Rh4CG076700 Rh4DG065800 Rh4DG065900
rosa_wichuraiana	Rw4G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	251
AclI	AACGTT	1 cut(s)	341
AclWI	GGATC	3 cut(s)	304, 317, 737
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	66, 131, 738
AfiI	CCNNNNNNNGG	5 cut(s)	97, 179, 248, 251, 455
AgsI	TTSAA	2 cut(s)	548, 646
AjnI	CCWGG	2 cut(s)	399, 688
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	3 cut(s)	167, 454, 747
AluI	AGCT	3 cut(s)	167, 454, 747
Alw26I	GTCTC	2 cut(s)	575, 710
AlwI	GGATC	3 cut(s)	304, 317, 737
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	4 cut(s)	99, 170, 366, 382
ApaI	GGGCCC	1 cut(s)	386
ApeKI	GCWGC	3 cut(s)	80, 153, 156
Asp700I	GAANNNNTTC	1 cut(s)	117
AspS9I	GGNCC	4 cut(s)	99, 367, 382, 383
AsuHPI	GGTGA	4 cut(s)	430, 566, 575, 682
BaeGI	GKGCMC	2 cut(s)	283, 386
BamHI	GGATCC	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	386
BbvCI	CCTCAGC	2 cut(s)	666, 725
BbvI	GCAGC	3 cut(s)	92, 165, 168
BccI	CCATC	5 cut(s)	269, 383, 503, 520, 701
BciT130I	CCWGG	2 cut(s)	401, 690
BcoDI	GTCTC	2 cut(s)	575, 710
BfaI	CTAG	4 cut(s)	168, 188, 455, 654
BglI	GCCNNNNNGGC	1 cut(s)	361
BisI	GCNGC	3 cut(s)	81, 154, 157
BlsI	GCNGC	3 cut(s)	82, 155, 158
Bme1390I	CCNGG	2 cut(s)	401, 690
BmgT120I	GGNCC	4 cut(s)	99, 367, 382, 383
BmiI	GGNNCC	5 cut(s)	236, 280, 311, 322, 384
BmrFI	CCNGG	2 cut(s)	401, 690
BmrI	ACTGGG	3 cut(s)	86, 370, 645
BmsI	GCATC	1 cut(s)	309
BmuI	ACTGGG	3 cut(s)	86, 370, 645
BpmI	CTGGAG	1 cut(s)	648
Bpu10I	CCTNAGC	3 cut(s)	450, 666, 725
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 179, 248, 251, 455
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	7 cut(s)	75, 92, 102, 184, 376, 631, 640
BseBI	CCWGG	2 cut(s)	401, 690
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	2 cut(s)	17, 261
BseLI	CCNNNNNNNGG	5 cut(s)	97, 179, 248, 251, 455
BseMII	CTCAG	5 cut(s)	69, 386, 441, 657, 716
BseNI	ACTGG	7 cut(s)	75, 92, 102, 184, 376, 631, 640
BseSI	GKGCMC	2 cut(s)	283, 386
BseXI	GCAGC	3 cut(s)	92, 165, 168
BsgI	GTGCAG	1 cut(s)	732
BshFI	GGCC	4 cut(s)	101, 172, 368, 384
BshNI	GGYRCC	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	324, 333
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	5 cut(s)	97, 179, 248, 251, 455
BsmAI	GTCTC	2 cut(s)	575, 710
BsmFI	GGGAC	1 cut(s)	646
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	4 cut(s)	101, 172, 368, 384
Bsp120I	GGGCCC	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	283, 386
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	309, 674, 729
BspANI	GGCC	4 cut(s)	101, 172, 368, 384
BspCNI	CTCAG	5 cut(s)	68, 387, 442, 658, 717
BspLI	GGNNCC	5 cut(s)	236, 280, 311, 322, 384
BspPI	GGATC	3 cut(s)	304, 317, 737
BspT107I	GGYRCC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	7 cut(s)	75, 92, 102, 184, 376, 631, 640
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	3 cut(s)	309, 674, 729
Bst2UI	CCWGG	2 cut(s)	401, 690
Bst4CI	ACNGT	2 cut(s)	292, 421
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	6 cut(s)	55, 395, 450, 666, 725, 743
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	17, 261
BstKTI	GATC	3 cut(s)	312, 677, 732
BstMAI	GTCTC	2 cut(s)	575, 710
BstMBI	GATC	3 cut(s)	309, 674, 729
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 333, 361, 503, 536
BstNI	CCWGG	2 cut(s)	401, 690
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	399, 688
BstSLI	GKGCMC	2 cut(s)	283, 386
BstV1I	GCAGC	3 cut(s)	92, 165, 168
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	101, 172, 368, 384
BtsCI	GGATG	2 cut(s)	17, 261
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	3 cut(s)	109, 417, 534
Cac8I	GCNNGC	1 cut(s)	366
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	4 cut(s)	99, 367, 382, 383
Csp6I	GTAC	3 cut(s)	65, 130, 737
CviAII	CATG	4 cut(s)	62, 110, 133, 137
CviQI	GTAC	3 cut(s)	65, 130, 737
DdeI	CTNAG	6 cut(s)	55, 395, 450, 666, 725, 743
DpnI	GATC	3 cut(s)	311, 676, 731
DpnII	GATC	3 cut(s)	309, 674, 729
DraIII	CACNNNGTG	1 cut(s)	251
Eco147I	AGGCCT	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	399, 688
EcoT22I	ATGCAT	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	386
FaeI	CATG	4 cut(s)	65, 113, 136, 140
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	4 cut(s)	61, 109, 132, 136
Fnu4HI	GCNGC	3 cut(s)	81, 154, 157
FokI	GGATG	2 cut(s)	4, 248
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	3 cut(s)	81, 154, 157
FspBI	CTAG	4 cut(s)	168, 188, 455, 654
GluI	GCNGC	3 cut(s)	81, 154, 157
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	4 cut(s)	101, 172, 368, 384
HapII	CCGG	2 cut(s)	324, 333
Hin1II	CATG	4 cut(s)	65, 113, 136, 140
HincII	GTYRAC	2 cut(s)	88, 695
HindII	GTYRAC	2 cut(s)	88, 695
HinfI	GANTC	1 cut(s)	718
HpaII	CCGG	2 cut(s)	324, 333
HphI	GGTGA	4 cut(s)	430, 566, 575, 682
Hpy166II	GTNNAC	3 cut(s)	88, 107, 695
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	4 cut(s)	122, 348, 516, 646
Hpy8I	GTNNAC	3 cut(s)	88, 107, 695
HpyAV	CCTTC	2 cut(s)	248, 542
HpyCH4III	ACNGT	2 cut(s)	292, 421
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	4 cut(s)	80, 136, 221, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 333, 361, 503, 536
HpyF3I	CTNAG	6 cut(s)	55, 395, 450, 666, 725, 743
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	65, 113, 136, 140
Kzo9I	GATC	3 cut(s)	309, 674, 729
Lsp1109I	GCAGC	3 cut(s)	92, 165, 168
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	4 cut(s)	168, 188, 455, 654
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	3 cut(s)	459, 609, 622
MalI	GATC	3 cut(s)	311, 676, 731
MboI	GATC	3 cut(s)	309, 674, 729
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	2 cut(s)	283, 386
MluCI	AATT	2 cut(s)	11, 117
MlyI	GAGTC	1 cut(s)	712
MnlI	CCTC	9 cut(s)	64, 197, 293, 324, 545, 623, 661, 696, 720
Mph1103I	ATGCAT	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	539
MspI	CCGG	2 cut(s)	324, 333
MspR9I	CCNGG	2 cut(s)	401, 690
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	2 cut(s)	401, 690
MwoI	GCNNNNNNNGC	5 cut(s)	278, 333, 361, 503, 536
NdeII	GATC	3 cut(s)	309, 674, 729
NlaIII	CATG	4 cut(s)	65, 113, 136, 140
NlaIV	GGNNCC	5 cut(s)	236, 280, 311, 322, 384
NmuCI	GTSAC	3 cut(s)	459, 609, 622
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	1 cut(s)	136
PceI	AGGCCT	1 cut(s)	172
PctI	GAATGC	1 cut(s)	530
PdmI	GAANNNNTTC	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	82, 155, 158
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
Psp1406I	AACGTT	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	399, 688
PspGI	CCWGG	2 cut(s)	399, 688
PspN4I	GGNNCC	5 cut(s)	236, 280, 311, 322, 384
PspOMI	GGGCCC	1 cut(s)	382
PspPI	GGNCC	4 cut(s)	99, 367, 382, 383
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	309
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	3 cut(s)	66, 131, 738
RsaNI	GTAC	3 cut(s)	65, 130, 737
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	3 cut(s)	81, 154, 157
Sau3AI	GATC	3 cut(s)	309, 674, 729
Sau96I	GGNCC	4 cut(s)	99, 367, 382, 383
SchI	GAGTC	1 cut(s)	712
ScrFI	CCNGG	2 cut(s)	401, 690
SduI	GDGCHC	2 cut(s)	283, 386
SetI	ASST	9 cut(s)	169, 208, 253, 344, 451, 456, 556, 672, 749
SfaNI	GCATC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	11, 117
SseBI	AGGCCT	1 cut(s)	172
SspMI	CTAG	4 cut(s)	168, 188, 455, 654
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	2 cut(s)	399, 688
TaaI	ACNGT	2 cut(s)	292, 421
TaiI	ACGT	1 cut(s)	344
TasI	AATT	2 cut(s)	11, 117
TatI	WGTACW	2 cut(s)	64, 129
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	3 cut(s)	109, 424, 541
TseFI	GTSAC	3 cut(s)	459, 609, 622
TseI	GCWGC	3 cut(s)	80, 153, 156
Tsp45I	GTSAC	3 cut(s)	459, 609, 622
TspDTI	ATGAA	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	3 cut(s)	109, 424, 541
Tth111I	GACNNNGTC	1 cut(s)	92
Van91I	CCANNNNNTGG	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	453
XceI	RCATGY	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	4 cut(s)	168, 188, 455, 654
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.