Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005053

Physical Location & Seq

Genomic Coordinates Reverse (-)

4714605 .. 4715351

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGTGAAGCAATTATCATCAGTCTATACCATTTTGCTTTCTATTCTAGTTGCCTCATCACTACTGGTCAATGCAGCAGTTGACCCTGTCAGGGCCAGTGGACATGAACCAATTCTTGAGATGTACATGCATGACATTCTTGGGGGAAGCAACCCAACAGCTAGGCCTATAACTGGCCTGCTAGGCAACATCTATGGAGGTCAAGTGCCCTTTGCAAAGCCAATAGGGTTCCTTCCACCACAAGGTGGTGTCCCCATCCCTAATGCCAATGGTGCCCTCCCTACTGTCAATGGCATCAATGGGATCCCTCTTGGAACCGGCTTGTCGGGCACAACATTCTCGGGAAAGCCCATCGGGCAGGCCCAAACACAGTTGGGGCCTGATGGGCTGAGCCTGGGCTTCGGCACCATCACCGTCATTGATGACATTCTCACCACAGCACCTGAGCTAGGGTCACAGACTATTGGTAAAGCACAAGGAGTTTATGTGGCAAGTTCAGCAGATGGGTCAACACAGATGATGGCATTCACTGCTATGATTGAAGGAGGTGAATATGGTGACAGTATCAACTTTTATGGTGTGTTTAAGATTGGAAGCCCAATGTCACATTTGTCTGTGACTGGAGGGACTGGGAAGTTCAAGAGTGCTAGTGGTTTTGCTGAGGTGAGGTCACTAATCCCTCCTGGCCAACATGTTACTGATGGTGCAGAGACTCTGCTGAGGATCGTTGTCCATCTAAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

249

Amino Acids

25.37

Weight (kDa)

5.65

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	129 - 224	5.2e-24	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24020 AT4G13580
fragaria_vesca	FvH4_4g05450 FvH4_4g05460
malus_domestica	MD13G1229800.v1.1 MD13G1229900.v1.1 MD13G1230100.v1.1
prunus_persica	Prupe.1G056700_v2.0.a1 Prupe.1G056800_v2.0.a1
pyrus_communis	pycom13g20250
rosa_chinensis	RchiOBHm_Chr4g0396611 RchiOBHm_Chr4g0396621
rosa_laevigata	RLG00000009515 RLG00000009516
rosa_multiflora	Rmu_co8415101.1_g000001 Rmu_sc0006586.1_g000021 Rmu_sc0006586.1_g000023 Rmu_sc0010969.1_g000003 Rmu_sc0010969.1_g000005
rosa_roxburghii	Rroxscaffold_5G00341470 Rroxscaffold_5G00341490
rosa_rugosa	Rorug03G0348300 Rorug03G0348400
rosa_samantha	Rh4BG068700 Rh4BG068900 Rh4CG076500 Rh4CG076700 Rh4DG065800 Rh4DG065900
rosa_wichuraiana	Rw4G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	272, 404
AccB7I	CCANNNNNTGG	1 cut(s)	245
AclWI	GGATC	3 cut(s)	298, 311, 731
AcoI	YGGCCR	1 cut(s)	685
AdeI	CACNNNGTG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	5 cut(s)	91, 173, 242, 245, 449
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	2 cut(s)	542, 640
AjnI	CCWGG	2 cut(s)	393, 682
AluBI	AGCT	3 cut(s)	161, 448, 741
AluI	AGCT	3 cut(s)	161, 448, 741
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	3 cut(s)	298, 311, 731
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	340
AoxI	GGCC	6 cut(s)	93, 164, 175, 360, 377, 685
ApeKI	GCWGC	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	111
AspS9I	GGNCC	3 cut(s)	93, 361, 377
AsuHPI	GGTGA	6 cut(s)	16, 403, 424, 560, 569, 676
AvaI	CYCGRG	1 cut(s)	340
BaeGI	GKGCMC	3 cut(s)	210, 277, 332
BalI	TGGCCA	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	303
BanI	GGYRCC	2 cut(s)	272, 404
BbvCI	CCTCAGC	2 cut(s)	660, 719
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	8 cut(s)	263, 359, 377, 416, 497, 514, 695, 741
BciT130I	CCWGG	2 cut(s)	395, 684
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	5 cut(s)	47, 162, 182, 449, 648
BglI	GCCNNNNNGGC	3 cut(s)	183, 355, 385
BisI	GCNGC	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	395, 684
BmeT110I	CYCGRG	1 cut(s)	340
BmgT120I	GGNCC	3 cut(s)	93, 361, 377
BmiI	GGNNCC	6 cut(s)	230, 274, 305, 316, 378, 406
BmrFI	CCNGG	2 cut(s)	395, 684
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	639
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	3 cut(s)	444, 660, 719
Bpu1102I	GCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	394
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 471, 501
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 173, 242, 245, 449
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	5 cut(s)	69, 96, 178, 625, 634
BseBI	CCWGG	2 cut(s)	395, 684
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	5 cut(s)	91, 173, 242, 245, 449
BseMII	CTCAG	4 cut(s)	380, 435, 651, 710
BseNI	ACTGG	5 cut(s)	69, 96, 178, 625, 634
BseSI	GKGCMC	3 cut(s)	210, 277, 332
BseXI	GCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	726
BshFI	GGCC	6 cut(s)	95, 166, 177, 362, 379, 687
BshNI	GGYRCC	2 cut(s)	272, 404
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	236, 640
BslI	CCNNNNNNNGG	5 cut(s)	91, 173, 242, 245, 449
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	2 cut(s)	236, 640
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	6 cut(s)	95, 166, 177, 362, 379, 687
BsoBI	CYCGRG	1 cut(s)	340
Bsp1286I	GDGCHC	3 cut(s)	210, 277, 332
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	303, 723
Bsp1720I	GCTNAGC	1 cut(s)	389
BspANI	GGCC	6 cut(s)	95, 166, 177, 362, 379, 687
BspCNI	CTCAG	4 cut(s)	381, 436, 652, 711
BspLI	GGNNCC	6 cut(s)	230, 274, 305, 316, 378, 406
BspPI	GGATC	3 cut(s)	298, 311, 731
BspT107I	GGYRCC	2 cut(s)	272, 404
BsrFI	RCCGGY	1 cut(s)	317
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	5 cut(s)	69, 96, 178, 625, 634
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	2 cut(s)	303, 723
Bst2UI	CCWGG	2 cut(s)	395, 684
Bst4CI	ACNGT	4 cut(s)	286, 372, 415, 563
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstAUI	TGTACA	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	179, 360
BstDEI	CTNAG	5 cut(s)	389, 444, 660, 719, 737
BstENI	CCTNNNNNAGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	306, 726
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	2 cut(s)	303, 723
BstMWI	GCNNNNNNNGC	7 cut(s)	183, 272, 327, 355, 385, 497, 530
BstNI	CCWGG	2 cut(s)	395, 684
BstNSI	RCATGY	2 cut(s)	130, 695
BstSCI	CCNGG	2 cut(s)	393, 682
BstSLI	GKGCMC	3 cut(s)	210, 277, 332
BstV1I	GCAGC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	6 cut(s)	95, 166, 177, 362, 379, 687
BtsCI	GGATG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	103, 528
Cac8I	GCNNGC	2 cut(s)	179, 360
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	3 cut(s)	93, 361, 377
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	4 cut(s)	104, 127, 131, 692
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	5 cut(s)	389, 444, 660, 719, 737
DpnI	GATC	2 cut(s)	305, 725
DpnII	GATC	2 cut(s)	303, 723
DraIII	CACNNNGTG	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	685
Eco147I	AGGCCT	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	393, 682
EcoT22I	ATGCAT	1 cut(s)	132
FaeI	CATG	4 cut(s)	107, 130, 134, 695
FaqI	GGGAC	2 cut(s)	236, 640
FatI	CATG	4 cut(s)	103, 126, 130, 691
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	5 cut(s)	47, 162, 182, 449, 648
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	6 cut(s)	95, 166, 177, 362, 379, 687
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	4 cut(s)	107, 130, 134, 695
HincII	GTYRAC	2 cut(s)	82, 510
HindII	GTYRAC	2 cut(s)	82, 510
HinfI	GANTC	1 cut(s)	712
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	6 cut(s)	16, 403, 424, 560, 569, 676
Hpy166II	GTNNAC	3 cut(s)	82, 101, 510
Hpy188III	TCNNGA	3 cut(s)	116, 342, 640
Hpy8I	GTNNAC	3 cut(s)	82, 101, 510
HpyAV	CCTTC	2 cut(s)	242, 536
HpyCH4III	ACNGT	4 cut(s)	286, 372, 415, 563
HpyCH4V	TGCA	4 cut(s)	74, 130, 215, 707
HpyF10VI	GCNNNNNNNGC	7 cut(s)	183, 272, 327, 355, 385, 497, 530
HpyF3I	CTNAG	5 cut(s)	389, 444, 660, 719, 737
Hsp92II	CATG	4 cut(s)	107, 130, 134, 695
Kzo9I	GATC	2 cut(s)	303, 723
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	5 cut(s)	47, 162, 182, 449, 648
MaeIII	GTNAC	6 cut(s)	453, 557, 603, 616, 669, 694
MalI	GATC	2 cut(s)	305, 725
MboI	GATC	2 cut(s)	303, 723
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	3 cut(s)	210, 277, 332
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	2 cut(s)	11, 111
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	1 cut(s)	706
Mox20I	TGGCCA	1 cut(s)	687
Mph1103I	ATGCAT	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	687
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	395, 684
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	2 cut(s)	395, 684
MwoI	GCNNNNNNNGC	7 cut(s)	183, 272, 327, 355, 385, 497, 530
NdeII	GATC	2 cut(s)	303, 723
NlaIII	CATG	4 cut(s)	107, 130, 134, 695
NlaIV	GGNNCC	6 cut(s)	230, 274, 305, 316, 378, 406
NmuCI	GTSAC	5 cut(s)	453, 557, 603, 616, 669
NsiI	ATGCAT	1 cut(s)	132
NspI	RCATGY	2 cut(s)	130, 695
PceI	AGGCCT	1 cut(s)	166
PciI	ACATGT	1 cut(s)	691
PctI	GAATGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PscI	ACATGT	1 cut(s)	691
Psp6I	CCWGG	2 cut(s)	393, 682
PspGI	CCWGG	2 cut(s)	393, 682
PspN4I	GGNNCC	6 cut(s)	230, 274, 305, 316, 378, 406
PspPI	GGNCC	3 cut(s)	93, 361, 377
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	303, 723
Sau96I	GGNCC	3 cut(s)	93, 361, 377
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	2 cut(s)	395, 684
SduI	GDGCHC	3 cut(s)	210, 277, 332
SetI	ASST	9 cut(s)	163, 202, 247, 445, 450, 550, 666, 671, 743
SfaNI	GCATC	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	11, 111
SseBI	AGGCCT	1 cut(s)	166
SspMI	CTAG	5 cut(s)	47, 162, 182, 449, 648
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	2 cut(s)	393, 682
TaaI	ACNGT	4 cut(s)	286, 372, 415, 563
TasI	AATT	2 cut(s)	11, 111
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	2 cut(s)	103, 535
TseFI	GTSAC	5 cut(s)	453, 557, 603, 616, 669
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	5 cut(s)	453, 557, 603, 616, 669
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	103, 535
Tth111I	GACNNNGTC	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	447
XceI	RCATGY	2 cut(s)	130, 695
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	5 cut(s)	47, 162, 182, 449, 648
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.