Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006586.1

Orthogroup ID

OG0005053

Physical Location & Seq

Genomic Coordinates Reverse (-)

77443 .. 78141

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006586.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgcacgcagcattttcagttgatcctgcagcagatggcaaagagccagttcttgaattatacatgcacgacattcttggtggcagtagccctacagctaggccgatcactggcttgctaggtaacatctacagcagtcaagttcccttcgccaagccaataggattcaatgttccaagtggtggggtggctgtcccaaatgccaatggtgccctgccgactgtaaatggcgccaccggtctcccactaggaaccggcttatcaggtacagcttttgcaggaaatgcagatcaacagaaccagaatggcaatatcgcaacccagctagcagcagatggattgggactgggattcgggacaatcactgtcattgacgacatactgacctccagccccgacttgggatcacaaacacttggaaaagctcaaggaatttatatggcaagctcagcagatggatcacgacagctgatggcatttacagctatggtggaaggaggggagtataacgataacctcaacttctttggagtgtacaagattggaagtaccatgtcacagttgtcagtaactggtggcacaggtaagtttaagaatgccaatggaatcgcagagttgcgaccactgattcctccaggccaacatgcaacagatggtgcagaaactttgctgagggttactgtgcacttaaactattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

232

Amino Acids

23.62

Weight (kDa)

4.85

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24020 AT4G13580
fragaria_vesca	FvH4_4g05450 FvH4_4g05460
malus_domestica	MD13G1229800.v1.1 MD13G1229900.v1.1 MD13G1230100.v1.1
prunus_persica	Prupe.1G056700_v2.0.a1 Prupe.1G056800_v2.0.a1
pyrus_communis	pycom13g20250
rosa_chinensis	RchiOBHm_Chr4g0396611 RchiOBHm_Chr4g0396621
rosa_laevigata	RLG00000009515 RLG00000009516
rosa_multiflora	Rmu_co8415101.1_g000001 Rmu_sc0006586.1_g000021 Rmu_sc0006586.1_g000023 Rmu_sc0010969.1_g000003 Rmu_sc0010969.1_g000005
rosa_roxburghii	Rroxscaffold_5G00341470 Rroxscaffold_5G00341490
rosa_rugosa	Rorug03G0348300 Rorug03G0348400
rosa_samantha	Rh4BG068700 Rh4BG068900 Rh4CG076500 Rh4CG076700 Rh4DG065800 Rh4DG065900
rosa_wichuraiana	Rw4G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	209, 230
AccB7I	CCANNNNNTGG	1 cut(s)	182
AclWI	GGATC	3 cut(s)	17, 412, 466
AcsI	RAATTY	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	3 cut(s)	268, 536, 550
AfiI	CCNNNNNNNGG	4 cut(s)	110, 182, 400, 401
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	56, 169
AjnI	CCWGG	1 cut(s)	634
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	7 cut(s)	98, 272, 325, 425, 447, 469, 485
AluI	AGCT	7 cut(s)	98, 272, 325, 425, 447, 469, 485
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	1 cut(s)	245
Alw44I	GTGCAC	1 cut(s)	683
AlwI	GGATC	3 cut(s)	17, 412, 466
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	2 cut(s)	101, 637
ApaLI	GTGCAC	1 cut(s)	683
ApeKI	GCWGC	3 cut(s)	8, 29, 329
ApoI	RAATTY	1 cut(s)	432
AsiGI	ACCGGT	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	233
AsuNHI	GCTAGC	1 cut(s)	325
BaeGI	GKGCMC	2 cut(s)	214, 687
BanI	GGYRCC	2 cut(s)	209, 230
Bbv12I	GWGCWC	1 cut(s)	687
BbvCI	CCTCAGC	1 cut(s)	671
BbvI	GCAGC	3 cut(s)	20, 41, 341
BccI	CCATC	5 cut(s)	29, 329, 449, 466, 647
BciT130I	CCWGG	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	4 cut(s)	99, 119, 248, 326
BfmI	CTRYAG	3 cut(s)	27, 93, 130
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	3 cut(s)	9, 30, 330
BlpI	GCTNAGC	1 cut(s)	448
BlsI	GCNGC	3 cut(s)	10, 31, 331
Bme1390I	CCNGG	1 cut(s)	636
BmiI	GGNNCC	3 cut(s)	211, 232, 253
BmrFI	CCNGG	1 cut(s)	636
BmrI	ACTGGG	1 cut(s)	356
BmtI	GCTAGC	1 cut(s)	329
BmuI	ACTGGG	1 cut(s)	356
BpmI	CTGGAG	2 cut(s)	373, 618
Bpu10I	CCTNAGC	1 cut(s)	671
Bpu1102I	GCTNAGC	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 182, 400, 401
Bse118I	RCCGGY	2 cut(s)	236, 254
Bse1I	ACTGG	4 cut(s)	47, 115, 351, 577
BseBI	CCWGG	1 cut(s)	636
BseLI	CCNNNNNNNGG	4 cut(s)	110, 182, 400, 401
BseMII	CTCAG	2 cut(s)	462, 662
BseNI	ACTGG	4 cut(s)	47, 115, 351, 577
BseSI	GKGCMC	2 cut(s)	214, 687
BseXI	GCAGC	3 cut(s)	20, 41, 341
BseYI	CCCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	678
BshFI	GGCC	2 cut(s)	103, 639
BshNI	GGYRCC	2 cut(s)	209, 230
BshTI	ACCGGT	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	687
BsiSI	CCGG	2 cut(s)	237, 255
BslFI	GGGAC	3 cut(s)	179, 357, 370
BslI	CCNNNNNNNGG	4 cut(s)	110, 182, 400, 401
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	3 cut(s)	179, 357, 370
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	103, 639
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	214, 687
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	5 cut(s)	22, 105, 289, 404, 458
Bsp1720I	GCTNAGC	1 cut(s)	448
BspANI	GGCC	2 cut(s)	103, 639
BspCNI	CTCAG	2 cut(s)	461, 663
BspLI	GGNNCC	3 cut(s)	211, 232, 253
BspMAI	CTGCAG	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	329
BspPI	GGATC	3 cut(s)	17, 412, 466
BspT107I	GGYRCC	2 cut(s)	209, 230
BspTNI	GGTCTC	1 cut(s)	245
BsrFI	RCCGGY	2 cut(s)	236, 254
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	4 cut(s)	47, 115, 351, 577
BssAI	RCCGGY	2 cut(s)	236, 254
BssMI	GATC	5 cut(s)	22, 105, 289, 404, 458
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	4 cut(s)	223, 367, 561, 682
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	4 cut(s)	6, 116, 327, 445
BstDEI	CTNAG	2 cut(s)	448, 671
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	5 cut(s)	25, 108, 292, 407, 461
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	5 cut(s)	22, 105, 289, 404, 458
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 284, 449, 482
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	2 cut(s)	67, 647
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	3 cut(s)	27, 93, 130
BstSLI	GKGCMC	2 cut(s)	214, 687
BstV1I	GCAGC	3 cut(s)	20, 41, 341
BsuRI	GGCC	2 cut(s)	103, 639
BtsIMutI	CAGTG	3 cut(s)	108, 363, 623
Cac8I	GCNNGC	4 cut(s)	6, 116, 327, 445
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	2 cut(s)	236, 254
Csp6I	GTAC	3 cut(s)	267, 535, 549
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	3 cut(s)	64, 553, 644
CviQI	GTAC	3 cut(s)	267, 535, 549
DdeI	CTNAG	2 cut(s)	448, 671
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	5 cut(s)	24, 107, 291, 406, 460
DpnII	GATC	5 cut(s)	22, 105, 289, 404, 458
Eco31I	GGTCTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	634
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	3 cut(s)	67, 556, 647
FaiI	YATR	9 cut(s)	61, 65, 380, 438, 440, 488, 507, 554, 645
FaqI	GGGAC	3 cut(s)	179, 357, 370
FatI	CATG	3 cut(s)	63, 552, 643
Fnu4HI	GCNGC	3 cut(s)	9, 30, 330
Fsp4HI	GCNGC	3 cut(s)	9, 30, 330
FspBI	CTAG	4 cut(s)	99, 119, 248, 326
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	3 cut(s)	9, 30, 330
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	2 cut(s)	373, 618
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	103, 639
HapII	CCGG	2 cut(s)	237, 255
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	67, 556, 647
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	4 cut(s)	165, 351, 606, 628
HpaII	CCGG	2 cut(s)	237, 255
Hpy166II	GTNNAC	2 cut(s)	535, 685
Hpy188III	TCNNGA	3 cut(s)	53, 355, 462
Hpy8I	GTNNAC	2 cut(s)	535, 685
HpyAV	CCTTC	2 cut(s)	157, 488
HpyCH4III	ACNGT	4 cut(s)	223, 367, 561, 682
HpyCH4V	TGCA	8 cut(s)	4, 29, 67, 278, 287, 647, 659, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 284, 449, 482
HpyF3I	CTNAG	2 cut(s)	448, 671
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	67, 556, 647
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
Kzo9I	GATC	5 cut(s)	22, 105, 289, 404, 458
Lsp1109I	GCAGC	3 cut(s)	20, 41, 341
MaeI	CTAG	4 cut(s)	99, 119, 248, 326
MaeIII	GTNAC	4 cut(s)	122, 555, 568, 676
MalI	GATC	5 cut(s)	24, 107, 291, 406, 460
MboI	GATC	5 cut(s)	22, 105, 289, 404, 458
MhlI	GDGCHC	2 cut(s)	214, 687
MluCI	AATT	2 cut(s)	56, 432
Mly113I	GGCGCC	1 cut(s)	231
MnlI	CCTC	5 cut(s)	397, 491, 527, 642, 666
MseI	TTAA	2 cut(s)	591, 689
MspA1I	CMGCKG	1 cut(s)	469
MspI	CCGG	2 cut(s)	237, 255
MspR9I	CCNGG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	4 cut(s)	209, 284, 449, 482
NarI	GGCGCC	1 cut(s)	231
NdeII	GATC	5 cut(s)	22, 105, 289, 404, 458
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	67, 556, 647
NlaIV	GGNNCC	3 cut(s)	211, 232, 253
NmuCI	GTSAC	1 cut(s)	555
NspI	RCATGY	2 cut(s)	67, 647
PctI	GAATGC	1 cut(s)	601
PfeI	GAWTC	4 cut(s)	165, 351, 606, 628
PflMI	CCANNNNNTGG	1 cut(s)	182
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	10, 31, 331
PluTI	GGCGCC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	634
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	3 cut(s)	211, 232, 253
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	3 cut(s)	268, 536, 550
RsaNI	GTAC	3 cut(s)	267, 535, 549
SaqAI	TTAA	2 cut(s)	591, 689
SatI	GCNGC	3 cut(s)	9, 30, 330
Sau3AI	GATC	5 cut(s)	22, 105, 289, 404, 458
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	2 cut(s)	214, 687
SfcI	CTRYAG	3 cut(s)	27, 93, 130
SfoI	GGCGCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	56, 432
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	4 cut(s)	99, 119, 248, 326
StyD4I	CCNGG	1 cut(s)	634
TaaI	ACNGT	4 cut(s)	223, 367, 561, 682
TasI	AATT	2 cut(s)	56, 432
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	4 cut(s)	165, 351, 606, 628
Tru1I	TTAA	2 cut(s)	591, 689
Tru9I	TTAA	2 cut(s)	591, 689
TscAI	CASTG	3 cut(s)	115, 370, 630
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	3 cut(s)	8, 29, 329
Tsp45I	GTSAC	1 cut(s)	555
TspRI	CASTG	3 cut(s)	115, 370, 630
Van91I	CCANNNNNTGG	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	683
XapI	RAATTY	1 cut(s)	432
XceI	RCATGY	2 cut(s)	67, 647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XspI	CTAG	4 cut(s)	99, 119, 248, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.