Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8415101.1

Orthogroup ID

OG0005053

Physical Location & Seq

Genomic Coordinates Reverse (-)

637 .. 1257

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8415101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgcatgatattcttgggggcagcagcccaacagctaggcctataactggtctgctaggcaacatctatggaggtcaagttccctttgcaaagccaatagggttccttcccccacaaggtggtgttcccatccccaatgccaatggtgccctccctactgtcaatggcatcaatgggatccctcttggaaccggcttgtccggcacaacgttttcgggaaagcccattgggcaggcccagacccagttgggccctgatggtctgagcctgggcttcggcactatcactgtcattgatgacattctcaccacagcacctgagctagggtcacagagtattggtaaagcacaaggggtttatgtggcaagttcagcagatgggtcaagacagatgatggcattcactgctatgattgaaggaggtgagtatggtgatagtctcaacttctatggtgtgtttaagattggaagcccaatgtcacatttgtctgtgactggagggactgggaagttcaagagtgctagtggttttgctgaggtgagatcactaatccctcctggtcaacatattactgatggtgcagagactctgctgaggatcatcgtacatctaagctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

206

Amino Acids

20.9

Weight (kDa)

6.03

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24020 AT4G13580
fragaria_vesca	FvH4_4g05450 FvH4_4g05460
malus_domestica	MD13G1229800.v1.1 MD13G1229900.v1.1 MD13G1230100.v1.1
prunus_persica	Prupe.1G056700_v2.0.a1 Prupe.1G056800_v2.0.a1
pyrus_communis	pycom13g20250
rosa_chinensis	RchiOBHm_Chr4g0396611 RchiOBHm_Chr4g0396621
rosa_laevigata	RLG00000009515 RLG00000009516
rosa_multiflora	Rmu_co8415101.1_g000001 Rmu_sc0006586.1_g000021 Rmu_sc0006586.1_g000023 Rmu_sc0010969.1_g000003 Rmu_sc0010969.1_g000005
rosa_roxburghii	Rroxscaffold_5G00341470 Rroxscaffold_5G00341490
rosa_rugosa	Rorug03G0348300 Rorug03G0348400
rosa_samantha	Rh4BG068700 Rh4BG068900 Rh4CG076500 Rh4CG076700 Rh4DG065800 Rh4DG065900
rosa_wichuraiana	Rw4G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	119
AclI	AACGTT	1 cut(s)	209
AclWI	GGATC	3 cut(s)	172, 185, 605
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	4 cut(s)	47, 116, 119, 323
AgsI	TTSAA	2 cut(s)	416, 514
AjnI	CCWGG	2 cut(s)	267, 556
AloI	GAACNNNNNNTCC	2 cut(s)	63, 95
AluBI	AGCT	3 cut(s)	35, 322, 615
AluI	AGCT	3 cut(s)	35, 322, 615
Alw26I	GTCTC	2 cut(s)	443, 578
AlwI	GGATC	3 cut(s)	172, 185, 605
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	38, 234, 250
ApaI	GGGCCC	1 cut(s)	254
ApeKI	GCWGC	2 cut(s)	21, 24
AspS9I	GGNCC	3 cut(s)	235, 250, 251
AsuHPI	GGTGA	4 cut(s)	298, 434, 443, 550
BaeGI	GKGCMC	2 cut(s)	151, 254
BamHI	GGATCC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	254
BbvCI	CCTCAGC	2 cut(s)	534, 593
BbvI	GCAGC	2 cut(s)	33, 36
BccI	CCATC	5 cut(s)	137, 251, 371, 388, 569
BciT130I	CCWGG	2 cut(s)	269, 558
BcoDI	GTCTC	2 cut(s)	443, 578
BfaI	CTAG	4 cut(s)	36, 56, 323, 522
BglI	GCCNNNNNGGC	1 cut(s)	229
BisI	GCNGC	2 cut(s)	22, 25
BlsI	GCNGC	2 cut(s)	23, 26
Bme1390I	CCNGG	2 cut(s)	269, 558
BmgT120I	GGNCC	3 cut(s)	235, 250, 251
BmiI	GGNNCC	5 cut(s)	104, 148, 179, 190, 252
BmrFI	CCNGG	2 cut(s)	269, 558
BmrI	ACTGGG	2 cut(s)	238, 513
BmsI	GCATC	1 cut(s)	177
BmuI	ACTGGG	2 cut(s)	238, 513
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	3 cut(s)	318, 534, 593
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 116, 119, 323
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	4 cut(s)	52, 244, 499, 508
BseBI	CCWGG	2 cut(s)	269, 558
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	4 cut(s)	47, 116, 119, 323
BseMII	CTCAG	4 cut(s)	254, 309, 525, 584
BseNI	ACTGG	4 cut(s)	52, 244, 499, 508
BseSI	GKGCMC	2 cut(s)	151, 254
BseXI	GCAGC	2 cut(s)	33, 36
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	40, 236, 252
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	192, 201
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	4 cut(s)	47, 116, 119, 323
BsmAI	GTCTC	2 cut(s)	443, 578
BsmFI	GGGAC	1 cut(s)	514
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	3 cut(s)	40, 236, 252
Bsp120I	GGGCCC	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	151, 254
Bsp143I	GATC	3 cut(s)	177, 542, 597
BspANI	GGCC	3 cut(s)	40, 236, 252
BspCNI	CTCAG	4 cut(s)	255, 310, 526, 585
BspLI	GGNNCC	5 cut(s)	104, 148, 179, 190, 252
BspPI	GGATC	3 cut(s)	172, 185, 605
BspT107I	GGYRCC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	4 cut(s)	52, 244, 499, 508
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	177, 542, 597
Bst2UI	CCWGG	2 cut(s)	269, 558
Bst4CI	ACNGT	2 cut(s)	160, 289
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	5 cut(s)	263, 318, 534, 593, 611
BstENI	CCTNNNNNAGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	3 cut(s)	180, 545, 600
BstMAI	GTCTC	2 cut(s)	443, 578
BstMBI	GATC	3 cut(s)	177, 542, 597
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 201, 229, 371, 404
BstNI	CCWGG	2 cut(s)	269, 558
BstSCI	CCNGG	2 cut(s)	267, 556
BstSLI	GKGCMC	2 cut(s)	151, 254
BstV1I	GCAGC	2 cut(s)	33, 36
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	40, 236, 252
BtsCI	GGATG	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	285, 402
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	235, 250, 251
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	1 cut(s)	5
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	5 cut(s)	263, 318, 534, 593, 611
DpnI	GATC	3 cut(s)	179, 544, 599
DpnII	GATC	3 cut(s)	177, 542, 597
DraIII	CACNNNGTG	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	267, 556
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	254
FaeI	CATG	1 cut(s)	8
FaiI	YATR	8 cut(s)	6, 44, 69, 360, 410, 429, 450, 567
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	1 cut(s)	4
Fnu4HI	GCNGC	2 cut(s)	22, 25
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	22, 25
FspBI	CTAG	4 cut(s)	36, 56, 323, 522
GluI	GCNGC	2 cut(s)	22, 25
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	40, 236, 252
HapII	CCGG	2 cut(s)	192, 201
Hin1II	CATG	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	563
HindII	GTYRAC	1 cut(s)	563
HinfI	GANTC	1 cut(s)	586
HpaII	CCGG	2 cut(s)	192, 201
HphI	GGTGA	4 cut(s)	298, 434, 443, 550
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	3 cut(s)	216, 384, 514
Hpy8I	GTNNAC	1 cut(s)	563
HpyAV	CCTTC	2 cut(s)	116, 410
HpyCH4III	ACNGT	2 cut(s)	160, 289
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	4, 89, 581
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 201, 229, 371, 404
HpyF3I	CTNAG	5 cut(s)	263, 318, 534, 593, 611
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	3 cut(s)	177, 542, 597
Lsp1109I	GCAGC	2 cut(s)	33, 36
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	4 cut(s)	36, 56, 323, 522
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	3 cut(s)	327, 477, 490
MalI	GATC	3 cut(s)	179, 544, 599
MboI	GATC	3 cut(s)	177, 542, 597
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	2 cut(s)	151, 254
MlyI	GAGTC	1 cut(s)	580
MnlI	CCTC	8 cut(s)	65, 161, 192, 413, 491, 529, 564, 588
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	407
MspI	CCGG	2 cut(s)	192, 201
MspR9I	CCNGG	2 cut(s)	269, 558
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	2 cut(s)	269, 558
MwoI	GCNNNNNNNGC	5 cut(s)	146, 201, 229, 371, 404
NdeII	GATC	3 cut(s)	177, 542, 597
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	5 cut(s)	104, 148, 179, 190, 252
NmuCI	GTSAC	3 cut(s)	327, 477, 490
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	40
PctI	GAATGC	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	23, 26
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
Psp1406I	AACGTT	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	267, 556
PspGI	CCWGG	2 cut(s)	267, 556
PspN4I	GGNNCC	5 cut(s)	104, 148, 179, 190, 252
PspOMI	GGGCCC	1 cut(s)	250
PspPI	GGNCC	3 cut(s)	235, 250, 251
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	2 cut(s)	22, 25
Sau3AI	GATC	3 cut(s)	177, 542, 597
Sau96I	GGNCC	3 cut(s)	235, 250, 251
SchI	GAGTC	1 cut(s)	580
ScrFI	CCNGG	2 cut(s)	269, 558
SduI	GDGCHC	2 cut(s)	151, 254
SetI	ASST	9 cut(s)	37, 76, 121, 212, 319, 324, 424, 540, 617
SfaNI	GCATC	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	407
SseBI	AGGCCT	1 cut(s)	40
SspMI	CTAG	4 cut(s)	36, 56, 323, 522
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	267, 556
TaaI	ACNGT	2 cut(s)	160, 289
TaiI	ACGT	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	292, 409
TseFI	GTSAC	3 cut(s)	327, 477, 490
TseI	GCWGC	2 cut(s)	21, 24
Tsp45I	GTSAC	3 cut(s)	327, 477, 490
TspRI	CASTG	2 cut(s)	292, 409
Van91I	CCANNNNNTGG	1 cut(s)	119
XagI	CCTNNNNNAGG	1 cut(s)	321
XspI	CTAG	4 cut(s)	36, 56, 323, 522
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.