Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003202

Physical Location & Seq

Genomic Coordinates Reverse (-)

5752171 .. 5757545

Gene Structure 5375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06460.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAGTACGAGACTAACAACTGGATTTGGGATGGTGTGTATAACCACCCACATGTATTTGGAGGTTTAATGCTCACGGCTGCCTTGCTAGGCTTGTCCACGAGCTATTTTGGTGGAATTTCGGTCCCTCAGTTGCCTTACTTATGGCCGGATTCGGGGATTTTCCATAAGAAGAAATCTGAGAAGAAGCGCATTCGGGTGTACATGGATGGGTGTTTTGATCTCATGCATTACGGCCATGCCAATGCTCTGAGGCAAGCCAAGGCTCTGGGGGATGAATTAGTGGTTGGGGTTGTTAGTGACGAAGAGATCGTTGCCAATAAAGGACCCCCTGTTTTATCCATGGAAGAGAGATTGGCTCTTGTAAGCGGGTTGAAGTGGGTGGATCAAGTCATAGCCAATGCTCCTTATGAAATCACTGAGCAATTCATGAACAAGCTCTTCAATGAGCATAAAATTGACTACATCATACATGGTGATGATCCTTGCCTGCTTCCAGACGGAACGGATGCTTATGCCTTGGCAAAGAAAGCTGGTCGCTACAAACAAATCAAGCGCACTGAAGGTGTCTCCAGCACCGATATTGTAGGGAGGATACTTTCTTCTTTAAAGGAGACAAATGATACATCTTCACATGGAGATACTTGTGAAGAAAGTCAATCCAAGAGTGCCCAATTATCTCAATTTCTGCCAACATCCCGAAGAATTGTGCAATTCTCCAATGGAAAGGCTCCTGGACCAAATGCTCGTATTGTGTACATTGATGGGGCATTTGATCTCTTTCACGCTGGACATGTTGAGATTCTGAAGAATGCTAGGCAGCTTGGAGACTTTTTACTAGTTGGCATCCACAACGACTACACTGTGAGTGAACACAGGGGGAAGCATCCAATAATGCATTTACACGAACGTAGTCTTGGTGTGCTGGGTTGTCGCTATGTTGATGAGGTCATCATAGGTGCTCCTTGGGAAATTACCATGGATATGATAACAACTTTTAACATTTCATTGGTGGTGCATGGGACAGTTTCCGAGTACAACTCCTCGTTTACTGGTGAAAGTGATCCTTATTCTGTTCCCAAGAGCATGGGGATTTTCCAAGTACTTGAAAGCCCAAAAGAGATCACAACAACATCAGTAGCCCAGAGGATAATTGCTAATCATGATGCTTACCTGAAACGCAACGCCAGGAAGACAGCAAGTGAAAAGAAATACTATGAACAGAAGAAATATGTCTCAGGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

416

Amino Acids

46.37

Weight (kDa)

6.28

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	68 - 197	5.6e-26	Cytidylyltransferase-like
CTP_transf_like	PF01467	253 - 342	2.4e-17	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38670
fragaria_vesca	FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_6g09110
malus_domestica	MD04G1180800.v1.1 MD12G1196100.v1.1 MD13G1236200.v1.1 MD16G1241200.v1.1
prunus_persica	Prupe.1G067900_v2.0.a1 Prupe.1G067900_v2.0.a1 Prupe.6G300600_v2.0.a1
pyrus_communis	pycom04g15990 pycom13g20890 pycom16g20190
rosa_chinensis	RchiOBHm_Chr3g0459321 RchiOBHm_Chr4g0398251
rosa_laevigata	RLG00000009374 RLG00000025091
rosa_multiflora	Rmu_sc0006944.1_g000005 Rmu_ssc0000112.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343230 Rroxscaffold_6G00420270
rosa_rugosa	Rorug03G0035300 Rorug04G0007100 Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh3AG093300 Rh4AG084600 Rh4BG082000 Rh4CG092000 Rh4DG077100
rosa_wichuraiana	Rw3G008030 Rw4G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	3 cut(s)	393, 476, 1058
AcoI	YGGCCR	2 cut(s)	146, 235
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	2 cut(s)	582, 827
AfaI	GTAC	5 cut(s)	8, 203, 758, 1037, 1104
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	2 cut(s)	52, 793
AgsI	TTSAA	3 cut(s)	376, 445, 1109
AhlI	ACTAGT	1 cut(s)	838
AjnI	CCWGG	2 cut(s)	733, 1187
AjuI	GAANNNNNNNTTGG	4 cut(s)	270, 302, 900, 932
AluBI	AGCT	4 cut(s)	105, 439, 533, 823
AluI	AGCT	4 cut(s)	105, 439, 533, 823
Alw21I	GWGCWC	1 cut(s)	964
Alw26I	GTCTC	6 cut(s)	5, 574, 608, 822, 1236, 1240
AlwI	GGATC	3 cut(s)	393, 476, 1058
AoxI	GGCC	2 cut(s)	146, 235
ApeKI	GCWGC	2 cut(s)	80, 820
ApoI	RAATTY	1 cut(s)	117
AspLEI	GCGC	2 cut(s)	192, 558
AspS9I	GGNCC	3 cut(s)	124, 326, 737
AsuHPI	GGTGA	2 cut(s)	488, 1067
AvaII	GGWCC	3 cut(s)	124, 326, 737
BaeGI	GKGCMC	1 cut(s)	673
BauI	CACGAG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	1199
Bbv12I	GWGCWC	1 cut(s)	964
BbvI	GCAGC	2 cut(s)	67, 832
BccI	CCATC	3 cut(s)	26, 203, 758
BceAI	ACGGC	2 cut(s)	93, 250
BciT130I	CCWGG	2 cut(s)	735, 1189
BciVI	GTATCC	1 cut(s)	588
BcoDI	GTCTC	6 cut(s)	5, 574, 608, 822, 1236, 1240
BcuI	ACTAGT	1 cut(s)	838
BfaI	CTAG	4 cut(s)	89, 816, 839, 1246
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	2 cut(s)	81, 821
BlsI	GCNGC	2 cut(s)	82, 822
BmcAI	AGTACT	1 cut(s)	1104
Bme1390I	CCNGG	2 cut(s)	735, 1189
Bme18I	GGWCC	3 cut(s)	124, 326, 737
BmgT120I	GGNCC	3 cut(s)	124, 326, 737
BmiI	GGNNCC	3 cut(s)	126, 328, 732
BmrFI	CCNGG	2 cut(s)	735, 1189
BmsI	GCATC	4 cut(s)	499, 855, 895, 1156
BpiI	GAAGAC	1 cut(s)	1199
BplI	GAGNNNNNCTC	4 cut(s)	343, 375, 1025, 1057
BpmI	CTGGAG	1 cut(s)	556
BsaJI	CCNNGG	5 cut(s)	261, 342, 519, 965, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	26, 1057
BseBI	CCWGG	2 cut(s)	735, 1189
BseDI	CCNNGG	5 cut(s)	261, 342, 519, 965, 978
BseGI	GGATG	7 cut(s)	37, 214, 280, 514, 695, 846, 886
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	4 cut(s)	143, 171, 242, 411
BseNI	ACTGG	2 cut(s)	26, 1057
BseRI	GAGGAG	1 cut(s)	1033
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	2 cut(s)	67, 832
BseYI	CCCAGC	1 cut(s)	925
BshFI	GGCC	2 cut(s)	148, 237
BsiHKAI	GWGCWC	1 cut(s)	964
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	110, 1036
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	6 cut(s)	5, 574, 608, 822, 1236, 1240
BsmFI	GGGAC	2 cut(s)	110, 1036
BsmI	GAATGC	2 cut(s)	192, 817
BsnI	GGCC	2 cut(s)	148, 237
Bsp1286I	GDGCHC	2 cut(s)	673, 964
Bsp1407I	TGTACA	2 cut(s)	201, 756
Bsp143I	GATC	7 cut(s)	220, 309, 385, 481, 775, 1063, 1122
Bsp19I	CCATGG	2 cut(s)	342, 978
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	2 cut(s)	148, 237
BspCNI	CTCAG	4 cut(s)	142, 172, 243, 412
BspHI	TCATGA	2 cut(s)	429, 1162
BspLI	GGNNCC	3 cut(s)	126, 328, 732
BspPI	GGATC	3 cut(s)	393, 476, 1058
BspQI	GCTCTTC	1 cut(s)	446
BsrGI	TGTACA	2 cut(s)	201, 756
BsrI	ACTGG	2 cut(s)	26, 1057
BssECI	CCNNGG	5 cut(s)	261, 342, 519, 965, 978
BssMI	GATC	7 cut(s)	220, 309, 385, 481, 775, 1063, 1122
BssSI	CACGAG	1 cut(s)	100
BssT1I	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	2 cut(s)	735, 1189
Bst4CI	ACNGT	2 cut(s)	865, 1027
Bst6I	CTCTTC	3 cut(s)	300, 342, 446
BstAUI	TGTACA	2 cut(s)	201, 756
BstC8I	GCNNGC	2 cut(s)	258, 491
BstDEI	CTNAG	5 cut(s)	129, 180, 251, 420, 1237
BstDSI	CCRYGG	2 cut(s)	342, 978
BstF5I	GGATG	7 cut(s)	37, 214, 280, 514, 695, 846, 886
BstHHI	GCGC	2 cut(s)	192, 558
BstKTI	GATC	7 cut(s)	223, 312, 388, 484, 778, 1066, 1125
BstMAI	GTCTC	6 cut(s)	5, 574, 608, 822, 1236, 1240
BstMBI	GATC	7 cut(s)	220, 309, 385, 481, 775, 1063, 1122
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	2 cut(s)	735, 1189
BstNSI	RCATGY	2 cut(s)	56, 797
BstSCI	CCNGG	2 cut(s)	733, 1187
BstSLI	GKGCMC	1 cut(s)	673
BstV1I	GCAGC	2 cut(s)	67, 832
BstV2I	GAAGAC	1 cut(s)	1199
BstXI	CCANNNNNNTGG	2 cut(s)	268, 1087
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	148, 237
BtgI	CCRYGG	2 cut(s)	342, 978
BtsCI	GGATG	7 cut(s)	37, 214, 280, 514, 695, 846, 886
BtsIMutI	CAGTG	3 cut(s)	417, 558, 861
Cac8I	GCNNGC	2 cut(s)	258, 491
CciI	TCATGA	2 cut(s)	429, 1162
CfoI	GCGC	2 cut(s)	192, 558
Cfr13I	GGNCC	3 cut(s)	124, 326, 737
Csp6I	GTAC	5 cut(s)	7, 202, 757, 1036, 1103
CviQI	GTAC	5 cut(s)	7, 202, 757, 1036, 1103
DdeI	CTNAG	5 cut(s)	129, 180, 251, 420, 1237
DpnI	GATC	7 cut(s)	222, 311, 387, 483, 777, 1065, 1124
DpnII	GATC	7 cut(s)	220, 309, 385, 481, 775, 1063, 1122
DraI	TTTAAA	1 cut(s)	609
EaeI	YGGCCR	2 cut(s)	146, 235
Eam1104I	CTCTTC	3 cut(s)	300, 342, 446
EarI	CTCTTC	3 cut(s)	300, 342, 446
Eco130I	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
Eco47I	GGWCC	3 cut(s)	124, 326, 737
Eco57I	CTGAAG	2 cut(s)	582, 827
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	733, 1187
EcoT14I	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
EcoT22I	ATGCAT	2 cut(s)	231, 900
ErhI	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
FalI	AAGNNNNNCTT	2 cut(s)	1051, 1083
FaqI	GGGAC	2 cut(s)	110, 1036
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	2 cut(s)	81, 821
FokI	GGATG	7 cut(s)	44, 221, 287, 521, 682, 833, 873
Fsp4HI	GCNGC	2 cut(s)	81, 821
FspBI	CTAG	4 cut(s)	89, 816, 839, 1246
GlaI	GCGC	2 cut(s)	191, 557
GluI	GCNGC	2 cut(s)	81, 821
GsaI	CCCAGC	1 cut(s)	929
GsuI	CTGGAG	1 cut(s)	556
HaeIII	GGCC	2 cut(s)	148, 237
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	2 cut(s)	192, 558
Hin6I	GCGC	2 cut(s)	190, 556
HinP1I	GCGC	2 cut(s)	190, 556
HinfI	GANTC	2 cut(s)	152, 802
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	2 cut(s)	488, 1067
Hpy166II	GTNNAC	5 cut(s)	99, 202, 757, 872, 1050
Hpy188I	TCNGA	4 cut(s)	181, 252, 807, 1033
Hpy188III	TCNNGA	5 cut(s)	430, 497, 699, 1163, 1239
Hpy8I	GTNNAC	5 cut(s)	99, 202, 757, 872, 1050
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	2 cut(s)	865, 1027
HpyCH4IV	ACGT	1 cut(s)	910
HpyCH4V	TGCA	4 cut(s)	229, 712, 898, 1018
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	5 cut(s)	129, 180, 251, 420, 1237
HpySE526I	ACGT	1 cut(s)	910
HspAI	GCGC	2 cut(s)	190, 556
Kzo9I	GATC	7 cut(s)	220, 309, 385, 481, 775, 1063, 1122
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	3 cut(s)	409, 736, 967
Lsp1109I	GCAGC	2 cut(s)	67, 832
LweI	GCATC	4 cut(s)	499, 855, 895, 1156
MaeI	CTAG	4 cut(s)	89, 816, 839, 1246
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	7 cut(s)	222, 311, 387, 483, 777, 1065, 1124
MboI	GATC	7 cut(s)	220, 309, 385, 481, 775, 1063, 1122
MhlI	GDGCHC	2 cut(s)	673, 964
MnlI	CCTC	7 cut(s)	56, 138, 246, 585, 940, 1054, 1140
Mph1103I	ATGCAT	2 cut(s)	231, 900
MseI	TTAA	3 cut(s)	68, 608, 999
MslI	CAYNNNNRTG	5 cut(s)	51, 197, 243, 477, 983
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	735, 1189
Mva1269I	GAATGC	2 cut(s)	192, 817
MvaI	CCWGG	2 cut(s)	735, 1189
MwoI	GCNNNNNNNGC	1 cut(s)	530
NcoI	CCATGG	2 cut(s)	342, 978
NdeII	GATC	7 cut(s)	220, 309, 385, 481, 775, 1063, 1122
NlaIV	GGNNCC	3 cut(s)	126, 328, 732
NmuCI	GTSAC	1 cut(s)	299
NsiI	ATGCAT	2 cut(s)	231, 900
NspI	RCATGY	2 cut(s)	56, 797
PagI	TCATGA	2 cut(s)	429, 1162
PciI	ACATGT	2 cut(s)	52, 793
PciSI	GCTCTTC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	2 cut(s)	192, 817
PfeI	GAWTC	2 cut(s)	152, 802
PfoI	TCCNGGA	1 cut(s)	733
PkrI	GCNGC	2 cut(s)	82, 822
PpuMI	RGGWCCY	1 cut(s)	326
PscI	ACATGT	2 cut(s)	52, 793
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	733, 1187
PspFI	CCCAGC	1 cut(s)	925
PspGI	CCWGG	2 cut(s)	733, 1187
PspN4I	GGNNCC	3 cut(s)	126, 328, 732
PspPI	GGNCC	3 cut(s)	124, 326, 737
PspPPI	RGGWCCY	1 cut(s)	326
RsaI	GTAC	5 cut(s)	8, 203, 758, 1037, 1104
RsaNI	GTAC	5 cut(s)	7, 202, 757, 1036, 1103
RseI	CAYNNNNRTG	5 cut(s)	51, 197, 243, 477, 983
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	68, 608, 999
SatI	GCNGC	2 cut(s)	81, 821
Sau3AI	GATC	7 cut(s)	220, 309, 385, 481, 775, 1063, 1122
Sau96I	GGNCC	3 cut(s)	124, 326, 737
ScaI	AGTACT	1 cut(s)	1104
ScrFI	CCNGG	2 cut(s)	735, 1189
SduI	GDGCHC	2 cut(s)	673, 964
SfaNI	GCATC	4 cut(s)	499, 855, 895, 1156
SinI	GGWCC	3 cut(s)	124, 326, 737
SmiMI	CAYNNNNRTG	5 cut(s)	51, 197, 243, 477, 983
SpeI	ACTAGT	1 cut(s)	838
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	4 cut(s)	89, 816, 839, 1246
StyD4I	CCNGG	2 cut(s)	733, 1187
StyI	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
TaaI	ACNGT	2 cut(s)	865, 1027
TaiI	ACGT	1 cut(s)	913
TaqII	GACCGA	1 cut(s)	112
TatI	WGTACW	4 cut(s)	201, 756, 1035, 1102
TfiI	GAWTC	2 cut(s)	152, 802
Tru1I	TTAA	3 cut(s)	68, 608, 999
Tru9I	TTAA	3 cut(s)	68, 608, 999
TscAI	CASTG	3 cut(s)	424, 565, 868
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	2 cut(s)	80, 820
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	6 cut(s)	291, 418, 426, 446, 996, 1233
TspGWI	ACGGA	2 cut(s)	516, 521
TspRI	CASTG	3 cut(s)	424, 565, 868
VpaK11BI	GGWCC	3 cut(s)	124, 326, 737
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	2 cut(s)	56, 797
XspI	CTAG	4 cut(s)	89, 816, 839, 1246
ZrmI	AGTACT	1 cut(s)	1104
Zsp2I	ATGCAT	2 cut(s)	231, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.