Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000112.1

Orthogroup ID

OG0003202

Physical Location & Seq

Genomic Coordinates Forward (+)

120 .. 3114

Gene Structure 2995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000112.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgtcttcacatggagacccttgtgaagaaagtcaatccaagagcgcccaattatctcaatttctgccaacatcccgacgaattgtgcaattctccaatggaaaggctcctggaccaaatgctcgtattgtgtacattgatggggcatttgatctcttccatgctggacatgttgagcttggagactttttactagttggcatccacaacgatcacactgtgagtgaacacagaggcaagcatccaataatgcatttacatgaacgtagtcttggtgtgttgggttgccgctatgttgatgaggtcatcattggtgctccgtgggaaattaccatggatatgataacaactttcaacatttcattggtagtgcgtgggacagtttctgagtacaactcctcgtttactggtgaaagtgatccttattctgttcccaagagcatggggattttccaagtacttgaaagcccaaaagatataactacaacatcagtatctcagaggataattgcaaatcatgatgcttacttgaaacgcaacgccaggaaaacagcaagtgaaaaaaaatactacgaacagaagaaatatgtttcaggggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

200

Amino Acids

22.3

Weight (kDa)

6.55

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38670
fragaria_vesca	FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_6g09110
malus_domestica	MD04G1180800.v1.1 MD12G1196100.v1.1 MD13G1236200.v1.1 MD16G1241200.v1.1
prunus_persica	Prupe.1G067900_v2.0.a1 Prupe.1G067900_v2.0.a1 Prupe.6G300600_v2.0.a1
pyrus_communis	pycom04g15990 pycom13g20890 pycom16g20190
rosa_chinensis	RchiOBHm_Chr3g0459321 RchiOBHm_Chr4g0398251
rosa_laevigata	RLG00000009374 RLG00000025091
rosa_multiflora	Rmu_sc0006944.1_g000005 Rmu_ssc0000112.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343230 Rroxscaffold_6G00420270
rosa_rugosa	Rorug03G0035300 Rorug04G0007100 Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh3AG093300 Rh4AG084600 Rh4BG082000 Rh4CG092000 Rh4DG077100
rosa_wichuraiana	Rw3G008030 Rw4G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	1 cut(s)	413
AdeI	CACNNNGTG	1 cut(s)	220
AfaI	GTAC	3 cut(s)	134, 392, 459
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	355, 464, 532
AhlI	ACTAGT	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	109, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	9, 177
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	113
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
Bbv12I	GWGCWC	1 cut(s)	319
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	2 cut(s)	111, 544
BcoDI	GTCTC	2 cut(s)	9, 177
BcuI	ACTAGT	1 cut(s)	193
BfaI	CTAG	2 cut(s)	194, 601
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
BmcAI	AGTACT	1 cut(s)	459
Bme1390I	CCNGG	2 cut(s)	111, 544
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	111, 544
BmsI	GCATC	3 cut(s)	210, 250, 511
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	320, 333
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	111, 544
BseDI	CCNNGG	2 cut(s)	320, 333
BseGI	GGATG	3 cut(s)	71, 201, 241
BseMII	CTCAG	2 cut(s)	378, 512
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	391
BsmAI	GTCTC	2 cut(s)	9, 177
BsmFI	GGGAC	1 cut(s)	391
Bso31I	GGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	151, 211, 418
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	379, 511
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	9
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	320, 333
BssMI	GATC	3 cut(s)	151, 211, 418
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	111, 544
Bst4CI	ACNGT	2 cut(s)	220, 382
Bst6I	CTCTTC	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	387, 498
BstDSI	CCRYGG	2 cut(s)	320, 333
BstF5I	GGATG	3 cut(s)	71, 201, 241
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	154, 214, 421
BstMAI	GTCTC	2 cut(s)	9, 177
BstMBI	GATC	3 cut(s)	151, 211, 418
BstNI	CCWGG	2 cut(s)	111, 544
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	109, 542
BstXI	CCANNNNNNTGG	1 cut(s)	442
BtgI	CCRYGG	2 cut(s)	320, 333
BtsCI	GGATG	3 cut(s)	71, 201, 241
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	239
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	133, 391, 458
CviAII	CATG	7 cut(s)	11, 161, 170, 260, 334, 442, 518
CviJI	RGCY	3 cut(s)	107, 178, 468
CviKI_1	RGCY	3 cut(s)	107, 178, 468
CviQI	GTAC	3 cut(s)	133, 391, 458
DdeI	CTNAG	2 cut(s)	387, 498
DpnI	GATC	3 cut(s)	153, 213, 420
DpnII	GATC	3 cut(s)	151, 211, 418
DraIII	CACNNNGTG	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	109, 542
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	7 cut(s)	14, 164, 173, 263, 337, 445, 521
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	7 cut(s)	10, 160, 169, 259, 333, 441, 517
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	3 cut(s)	58, 188, 228
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	2 cut(s)	194, 601
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	48
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	7 cut(s)	14, 164, 173, 263, 337, 445, 521
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	3 cut(s)	133, 227, 405
Hpy188I	TCNGA	2 cut(s)	388, 501
Hpy188III	TCNNGA	2 cut(s)	75, 518
Hpy8I	GTNNAC	3 cut(s)	133, 227, 405
Hpy99I	CGWCG	1 cut(s)	81
HpyCH4III	ACNGT	2 cut(s)	220, 382
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	3 cut(s)	88, 253, 512
HpyF3I	CTNAG	2 cut(s)	387, 498
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	7 cut(s)	14, 164, 173, 263, 337, 445, 521
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	151, 211, 418
LmnI	GCTCC	2 cut(s)	112, 322
LpnPI	CCDG	7 cut(s)	96, 123, 150, 393, 529, 556, 579
LweI	GCATC	3 cut(s)	210, 250, 511
MaeI	CTAG	2 cut(s)	194, 601
MaeII	ACGT	1 cut(s)	265
MalI	GATC	3 cut(s)	153, 213, 420
MboI	GATC	3 cut(s)	151, 211, 418
MboII	GAAGA	3 cut(s)	38, 148, 592
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	6 cut(s)	50, 59, 81, 89, 327, 507
MnlI	CCTC	4 cut(s)	227, 295, 409, 495
Mph1103I	ATGCAT	1 cut(s)	255
MslI	CAYNNNNRTG	2 cut(s)	258, 338
MspR9I	CCNGG	2 cut(s)	111, 544
MvaI	CCWGG	2 cut(s)	111, 544
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	151, 211, 418
NlaIII	CATG	7 cut(s)	14, 164, 173, 263, 337, 445, 521
NlaIV	GGNNCC	1 cut(s)	108
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	1 cut(s)	173
PagI	TCATGA	1 cut(s)	517
PciI	ACATGT	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	290
PscI	ACATGT	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	109, 542
PspGI	CCWGG	2 cut(s)	109, 542
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	386
RsaI	GTAC	3 cut(s)	134, 392, 459
RsaNI	GTAC	3 cut(s)	133, 391, 458
RseI	CAYNNNNRTG	2 cut(s)	258, 338
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	3 cut(s)	151, 211, 418
Sau96I	GGNCC	1 cut(s)	113
ScaI	AGTACT	1 cut(s)	459
ScrFI	CCNGG	2 cut(s)	111, 544
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	3 cut(s)	180, 268, 306
SfaNI	GCATC	3 cut(s)	210, 250, 511
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	258, 338
SpeI	ACTAGT	1 cut(s)	193
Sse9I	AATT	6 cut(s)	50, 59, 81, 89, 327, 507
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	2 cut(s)	194, 601
StyD4I	CCNGG	2 cut(s)	109, 542
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	220, 382
TaiI	ACGT	1 cut(s)	268
TasI	AATT	6 cut(s)	50, 59, 81, 89, 327, 507
TatI	WGTACW	3 cut(s)	132, 390, 457
TauI	GCSGC	1 cut(s)	291
TscAI	CASTG	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	276, 351
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	113
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	2 cut(s)	194, 601
ZrmI	AGTACT	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.