Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003202

Physical Location & Seq

Genomic Coordinates Reverse (-)

4855221 .. 4860369

Gene Structure 5149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G067900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGTTGATTTCTGATTTTCTTTGTGCCATTGTGGTTTCAGGTTTTGTGTCTCCTCTTACTGAGAAAGTAGAGCTGAGAGAAAATATAAAGCAGAGGAAAAAGTGTGGCAACATGGAATATGAAACTAACAACTGGATTTGGGATGGAATGTACAATCACCCTCATGTATTTGGTGGTCTAATGCTCACGGCTGCCTTACTCGGCTTGTCCACCAGCTATTTCGGTGGAATCACAGTTCCTCAGTTGCCTTATTTATGGCCTGATTCCGGGATTTTCCATAAGAAGAAATGTGAGAAGAAGCGCATTCGTGTTTACATGGATGGGTGTTTCGATCTCATGCATTATGGCCATGCCAATGCCTTGAGGCAAGCCAAGGCTTTAGGAGATGAGTTGGTGGTGGGTGTTGTTAGTGATGAGGAGATCATTGCCAATAAAGGTCCACCTGTTTTATCCATGGAAGAGAGACTGGCTCTTGTTAGTGGGTTGAAGTGGGTAGATGAAGTCATACCGAAAGCTCCATATGAAATTACGGAGCAGTTCATGAGCAGACTCTTCAATGAGCATAAGATTGACTATATCATACATGGTGATGATCCTTGCCTGCTGCCAGATGGAACCGATGCTTATGCCTTGGCAAAAAAAGCTGGCCGCTACAAGCAGATTAAACGAACTGAAGGTGTCTCCAGCACAGATATTGTAGGGAGGATACTCTCTTCTTTAAGGGATACAAATGGTGGTGAAGATCAAAACAATACATCCTTGCATAAAACCCCAGAAAGTCAACCGAAGAGTGCCCATTTATCTCAGTTTCTACCAACATCTCGACGGATTGTGCAATTCTCTAATGGAAAGGGACCTGGACCAAATGCTCGTGTTGTATACATTGATGGGGCATTTGATCTGTTTCATGCAGGACATGTTGAGATCCTCAAGAATGCTAGGCAGCTTGGAGACTTTCTTCTCGTTGGCATCCACAATGACGAAACTGTGAGTGAACACAGAGGGCACCATCCAATTATGCATTTACACGAACGTAGTCTTAGTGTATTGGGTTGCCGTTATGTTGATGAGGTCATCATTGGTGCTCCTTGGGAAGTTACCATGGACATGGTAACAACTTTCAACATTTCATTGGTTGTGCACGGGACAGTTTCCGAGTACAACTCCTTGTTTACTGGTGAAAGTGATCCTTATTCAGTTCCCAAGAGCATGGGGATTTTCAAATTACTTGAAAGCCCCAAAAATATAACAACAACATCAGTATCACAGAGGATAATTGCAAATCATGATGCTTACATGAAACGCAATGCGAAAAAGGCAGAGAGCGAAAAGAAATACTATGCACAGAAGACATATGTCTCAGGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

457

Amino Acids

51.04

Weight (kDa)

6.68

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38670
fragaria_vesca	FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_6g09110
malus_domestica	MD04G1180800.v1.1 MD12G1196100.v1.1 MD13G1236200.v1.1 MD16G1241200.v1.1
prunus_persica	Prupe.1G067900_v2.0.a1 Prupe.1G067900_v2.0.a1 Prupe.6G300600_v2.0.a1
pyrus_communis	pycom04g15990 pycom13g20890 pycom16g20190
rosa_chinensis	RchiOBHm_Chr3g0459321 RchiOBHm_Chr4g0398251
rosa_laevigata	RLG00000009374 RLG00000025091
rosa_multiflora	Rmu_sc0006944.1_g000005 Rmu_ssc0000112.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343230 Rroxscaffold_6G00420270
rosa_rugosa	Rorug03G0035300 Rorug04G0007100 Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh3AG093300 Rh4AG084600 Rh4BG082000 Rh4CG092000 Rh4DG077100
rosa_wichuraiana	Rw3G008030 Rw4G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1005
AccI	GTMKAC	1 cut(s)	879
AciI	CCGC	1 cut(s)	649
AclWI	GGATC	3 cut(s)	587, 919, 1181
AcoI	YGGCCR	2 cut(s)	346, 646
AcuI	CTGAAG	1 cut(s)	693
AfaI	GTAC	2 cut(s)	152, 1160
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	916
AgsI	TTSAA	5 cut(s)	487, 556, 1123, 1222, 1232
AjnI	CCWGG	1 cut(s)	856
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	5 cut(s)	73, 216, 515, 644, 946
AluI	AGCT	5 cut(s)	73, 216, 515, 644, 946
Alw21I	GWGCWC	2 cut(s)	1087, 1143
Alw26I	GTCTC	6 cut(s)	54, 457, 685, 945, 1359, 1363
Alw44I	GTGCAC	1 cut(s)	1139
AlwI	GGATC	3 cut(s)	587, 919, 1181
AoxI	GGCC	3 cut(s)	257, 346, 646
ApaLI	GTGCAC	1 cut(s)	1139
ApeKI	GCWGC	3 cut(s)	191, 604, 943
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	3 cut(s)	437, 854, 860
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	4 cut(s)	149, 599, 749, 1190
AvaII	GGWCC	3 cut(s)	437, 854, 860
BaeGI	GKGCMC	3 cut(s)	796, 1008, 1143
BaeI	ACNNNNGTAYC	2 cut(s)	1245, 1278
BalI	TGGCCA	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	1005
BauI	CACGAG	1 cut(s)	870
BbsI	GAAGAC	1 cut(s)	1355
Bbv12I	GWGCWC	2 cut(s)	1087, 1143
BbvI	GCAGC	3 cut(s)	178, 591, 955
BccI	CCATC	5 cut(s)	137, 314, 605, 881, 1017
BceAI	ACGGC	2 cut(s)	204, 1041
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	1 cut(s)	858
BciVI	GTATCC	2 cut(s)	699, 718
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	6 cut(s)	54, 457, 685, 945, 1359, 1363
BfaI	CTAG	2 cut(s)	939, 1369
BfuI	GTATCC	2 cut(s)	699, 718
BisI	GCNGC	4 cut(s)	192, 605, 649, 944
BlsI	GCNGC	4 cut(s)	193, 606, 650, 945
Bme1390I	CCNGG	2 cut(s)	268, 858
Bme18I	GGWCC	3 cut(s)	437, 854, 860
BmgT120I	GGNCC	3 cut(s)	437, 854, 860
BmiI	GGNNCC	3 cut(s)	616, 855, 1007
BmrFI	CCNGG	2 cut(s)	268, 858
BmsI	GCATC	3 cut(s)	610, 978, 1279
BoxI	GACNNNNGTC	1 cut(s)	1355
BpiI	GAAGAC	1 cut(s)	1355
BplI	GAGNNNNNCTC	4 cut(s)	454, 486, 1148, 1180
BpmI	CTGGAG	1 cut(s)	667
BpuEI	CTTGAG	2 cut(s)	382, 914
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	5 cut(s)	372, 453, 630, 1088, 1101
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	3 cut(s)	137, 471, 1180
Bse3DI	GCAATG	2 cut(s)	423, 1312
BseBI	CCWGG	1 cut(s)	858
BseDI	CCNNGG	5 cut(s)	372, 453, 630, 1088, 1101
BseGI	GGATG	5 cut(s)	148, 325, 755, 969, 1009
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMI	GCAATG	2 cut(s)	423, 1312
BseMII	CTCAG	4 cut(s)	51, 65, 254, 818
BseNI	ACTGG	3 cut(s)	137, 471, 1180
BseRI	GAGGAG	2 cut(s)	42, 431
BseSI	GKGCMC	3 cut(s)	796, 1008, 1143
BseXI	GCAGC	3 cut(s)	178, 591, 955
BshFI	GGCC	3 cut(s)	259, 348, 648
BshNI	GGYRCC	1 cut(s)	1005
BsiHKAI	GWGCWC	2 cut(s)	1087, 1143
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	867, 1159
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	6 cut(s)	54, 457, 685, 945, 1359, 1363
BsmFI	GGGAC	2 cut(s)	867, 1159
BsmI	GAATGC	2 cut(s)	303, 940
BsnI	GGCC	3 cut(s)	259, 348, 648
Bsp1286I	GDGCHC	4 cut(s)	796, 1008, 1087, 1143
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	7 cut(s)	331, 420, 592, 742, 898, 924, 1186
Bsp19I	CCATGG	2 cut(s)	453, 1101
BspACI	CCGC	1 cut(s)	649
BspANI	GGCC	3 cut(s)	259, 348, 648
BspCNI	CTCAG	4 cut(s)	52, 66, 253, 817
BspHI	TCATGA	2 cut(s)	540, 1285
BspLI	GGNNCC	3 cut(s)	616, 855, 1007
BspPI	GGATC	3 cut(s)	587, 919, 1181
BspT107I	GGYRCC	1 cut(s)	1005
BsrDI	GCAATG	2 cut(s)	423, 1312
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	3 cut(s)	137, 471, 1180
BssECI	CCNNGG	5 cut(s)	372, 453, 630, 1088, 1101
BssMI	GATC	7 cut(s)	331, 420, 592, 742, 898, 924, 1186
BssNAI	GTATAC	1 cut(s)	880
BssSI	CACGAG	1 cut(s)	870
BssT1I	CCWWGG	5 cut(s)	372, 453, 630, 1088, 1101
Bst1107I	GTATAC	1 cut(s)	880
Bst2BI	CACGAG	1 cut(s)	870
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	3 cut(s)	235, 988, 1150
Bst6I	CTCTTC	4 cut(s)	453, 557, 718, 782
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	369, 602, 646
BstDEI	CTNAG	6 cut(s)	60, 74, 240, 804, 1040, 1360
BstDSI	CCRYGG	2 cut(s)	453, 1101
BstF5I	GGATG	5 cut(s)	148, 325, 755, 969, 1009
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	7 cut(s)	334, 423, 595, 745, 901, 927, 1189
BstMAI	GTCTC	6 cut(s)	54, 457, 685, 945, 1359, 1363
BstMBI	GATC	7 cut(s)	331, 420, 592, 742, 898, 924, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	641, 1316
BstNI	CCWGG	1 cut(s)	858
BstNSI	RCATGY	1 cut(s)	920
BstPAI	GACNNNNGTC	1 cut(s)	1355
BstSCI	CCNGG	2 cut(s)	266, 856
BstSLI	GKGCMC	3 cut(s)	796, 1008, 1143
BstV1I	GCAGC	3 cut(s)	178, 591, 955
BstV2I	GAAGAC	1 cut(s)	1355
BstX2I	RGATCY	1 cut(s)	924
BstXI	CCANNNNNNTGG	2 cut(s)	1108, 1210
BstYI	RGATCY	1 cut(s)	924
BstZ17I	GTATAC	1 cut(s)	880
BsuI	GTATCC	2 cut(s)	699, 718
BsuRI	GGCC	3 cut(s)	259, 348, 648
BtgI	CCRYGG	2 cut(s)	453, 1101
BtsCI	GGATG	5 cut(s)	148, 325, 755, 969, 1009
Cac8I	GCNNGC	3 cut(s)	369, 602, 646
CciI	TCATGA	2 cut(s)	540, 1285
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	3 cut(s)	437, 854, 860
Csp6I	GTAC	2 cut(s)	151, 1159
CviQI	GTAC	2 cut(s)	151, 1159
DdeI	CTNAG	6 cut(s)	60, 74, 240, 804, 1040, 1360
DpnI	GATC	7 cut(s)	333, 422, 594, 744, 900, 926, 1188
DpnII	GATC	7 cut(s)	331, 420, 592, 742, 898, 924, 1186
EaeI	YGGCCR	2 cut(s)	346, 646
Eam1104I	CTCTTC	4 cut(s)	453, 557, 718, 782
EarI	CTCTTC	4 cut(s)	453, 557, 718, 782
Eco130I	CCWWGG	5 cut(s)	372, 453, 630, 1088, 1101
Eco47I	GGWCC	3 cut(s)	437, 854, 860
Eco57I	CTGAAG	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	854
EcoRII	CCWGG	1 cut(s)	856
EcoT14I	CCWWGG	5 cut(s)	372, 453, 630, 1088, 1101
EcoT22I	ATGCAT	2 cut(s)	342, 1023
ErhI	CCWWGG	5 cut(s)	372, 453, 630, 1088, 1101
FalI	AAGNNNNNCTT	2 cut(s)	1174, 1206
FaqI	GGGAC	2 cut(s)	867, 1159
FauNDI	CATATG	2 cut(s)	520, 1354
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	4 cut(s)	192, 605, 649, 944
FokI	GGATG	5 cut(s)	155, 332, 742, 956, 996
Fsp4HI	GCNGC	4 cut(s)	192, 605, 649, 944
FspBI	CTAG	2 cut(s)	939, 1369
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	4 cut(s)	192, 605, 649, 944
GsuI	CTGGAG	1 cut(s)	667
HaeIII	GGCC	3 cut(s)	259, 348, 648
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	782
HindII	GTYRAC	1 cut(s)	782
HinfI	GANTC	3 cut(s)	228, 263, 549
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	4 cut(s)	149, 599, 749, 1190
Hpy166II	GTNNAC	8 cut(s)	210, 313, 440, 782, 880, 995, 1141, 1173
Hpy188I	TCNGA	2 cut(s)	13, 1156
Hpy188III	TCNNGA	5 cut(s)	541, 822, 931, 1286, 1362
Hpy8I	GTNNAC	8 cut(s)	210, 313, 440, 782, 880, 995, 1141, 1173
Hpy99I	CGWCG	1 cut(s)	828
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	3 cut(s)	235, 988, 1150
HpyCH4IV	ACGT	1 cut(s)	1033
HpyCH4V	TGCA	8 cut(s)	340, 763, 835, 911, 1021, 1141, 1280, 1343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	641, 1316
HpyF3I	CTNAG	6 cut(s)	60, 74, 240, 804, 1040, 1360
HpySE526I	ACGT	1 cut(s)	1033
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	7 cut(s)	331, 420, 592, 742, 898, 924, 1186
LmnI	GCTCC	3 cut(s)	520, 532, 1090
Lsp1109I	GCAGC	3 cut(s)	178, 591, 955
LweI	GCATC	3 cut(s)	610, 978, 1279
MaeI	CTAG	2 cut(s)	939, 1369
MaeII	ACGT	1 cut(s)	1033
MaeIII	GTNAC	2 cut(s)	1096, 1111
MalI	GATC	7 cut(s)	333, 422, 594, 744, 900, 926, 1188
MboI	GATC	7 cut(s)	331, 420, 592, 742, 898, 924, 1186
MboII	GAAGA	9 cut(s)	295, 307, 470, 544, 705, 752, 799, 950, 1360
MflI	RGATCY	1 cut(s)	924
MhlI	GDGCHC	4 cut(s)	796, 1008, 1087, 1143
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	5 cut(s)	525, 836, 1014, 1223, 1275
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	543
Mox20I	TGGCCA	1 cut(s)	348
Mph1103I	ATGCAT	2 cut(s)	342, 1023
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	2 cut(s)	663, 719
MslI	CAYNNNNRTG	4 cut(s)	162, 354, 588, 1106
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	268, 858
Mva1269I	GAATGC	2 cut(s)	303, 940
MvaI	CCWGG	1 cut(s)	858
MwoI	GCNNNNNNNGC	2 cut(s)	641, 1316
NciI	CCSGG	1 cut(s)	268
NcoI	CCATGG	2 cut(s)	453, 1101
NdeI	CATATG	2 cut(s)	520, 1354
NdeII	GATC	7 cut(s)	331, 420, 592, 742, 898, 924, 1186
NlaIV	GGNNCC	3 cut(s)	616, 855, 1007
NmeAIII	GCCGAG	1 cut(s)	180
NsiI	ATGCAT	2 cut(s)	342, 1023
NspI	RCATGY	1 cut(s)	920
PagI	TCATGA	2 cut(s)	540, 1285
PciI	ACATGT	1 cut(s)	916
PctI	GAATGC	2 cut(s)	303, 940
PfeI	GAWTC	2 cut(s)	228, 263
PfoI	TCCNGGA	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	193, 606, 650, 945
PleI	GAGTC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	543
PpuMI	RGGWCCY	1 cut(s)	854
PscI	ACATGT	1 cut(s)	916
PshAI	GACNNNNGTC	1 cut(s)	1355
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	856
PspN4I	GGNNCC	3 cut(s)	616, 855, 1007
PspPI	GGNCC	3 cut(s)	437, 854, 860
PspPPI	RGGWCCY	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	924
RsaI	GTAC	2 cut(s)	152, 1160
RsaNI	GTAC	2 cut(s)	151, 1159
RseI	CAYNNNNRTG	4 cut(s)	162, 354, 588, 1106
SaqAI	TTAA	2 cut(s)	663, 719
SatI	GCNGC	4 cut(s)	192, 605, 649, 944
Sau3AI	GATC	7 cut(s)	331, 420, 592, 742, 898, 924, 1186
Sau96I	GGNCC	3 cut(s)	437, 854, 860
SchI	GAGTC	1 cut(s)	543
ScrFI	CCNGG	2 cut(s)	268, 858
SduI	GDGCHC	4 cut(s)	796, 1008, 1087, 1143
SfaNI	GCATC	3 cut(s)	610, 978, 1279
SinI	GGWCC	3 cut(s)	437, 854, 860
SmiMI	CAYNNNNRTG	4 cut(s)	162, 354, 588, 1106
SmlI	CTYRAG	2 cut(s)	361, 929
SmoI	CTYRAG	2 cut(s)	361, 929
Sse9I	AATT	5 cut(s)	525, 836, 1014, 1223, 1275
SsiI	CCGC	1 cut(s)	649
SspMI	CTAG	2 cut(s)	939, 1369
StyD4I	CCNGG	2 cut(s)	266, 856
StyI	CCWWGG	5 cut(s)	372, 453, 630, 1088, 1101
TaaI	ACNGT	3 cut(s)	235, 988, 1150
TaiI	ACGT	1 cut(s)	1036
TaqI	TCGA	2 cut(s)	330, 823
TasI	AATT	5 cut(s)	525, 836, 1014, 1223, 1275
TatI	WGTACW	2 cut(s)	150, 1158
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	2 cut(s)	228, 263
Tru1I	TTAA	2 cut(s)	663, 719
Tru9I	TTAA	2 cut(s)	663, 719
TseI	GCWGC	3 cut(s)	191, 604, 943
TspDTI	ATGAA	7 cut(s)	135, 513, 529, 537, 896, 1119, 1313
TspGWI	ACGGA	2 cut(s)	545, 841
VneI	GTGCAC	1 cut(s)	1139
VpaK11BI	GGWCC	3 cut(s)	437, 854, 860
XceI	RCATGY	1 cut(s)	920
XmiI	GTMKAC	1 cut(s)	879
XspI	CTAG	2 cut(s)	939, 1369
Zsp2I	ATGCAT	2 cut(s)	342, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.