Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003202

Physical Location & Seq

Genomic Coordinates Reverse (-)

23855247 .. 23860485

Gene Structure 5239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1236200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAATATGAAACTAACAACTGGATTTGGGATGGAATGTACAACCACCCACATGTATTTGGCGGTCTAATGCTGACGGCAGCCTTGCTCGGCCTGTCCACGAGCTATTTTGGTGGAATTACAGTTCCCCAGTTGCCTTATTTATGGTCTGAATCTGGGATCTTCCACAAGAAGAAATGTGATAAGAAGCGCATTCGGGTTTACATGGATGGTTGCTTTGATCTCATGCATTATGGTCATGCGAATGCCTTGAGGCAAGCCAAGGCTTTGGGAGATGAGTTGGTGGTGGGCGTAGTTAGCGACGAGGAGATTATTGCCAATAAAGGTCCACCTGTTTTATCCATGGAAGAGAGACTGGCTCTCGTAAGTGGTTTGAAGTGGGTGGATGAAGTCATACCCAATGCTCCTTATGAAATTACTGAGCAATTCATGGGCAGACTCTTCAACGAGCATAAGATTGACTATATTATACATGGTGATGACCCTTGCCTGCTGCCAGATGGAACTGATGCTTACGCCTTGGCGAAAAAAGCTGGTCGCTACAAGCAAATTAAACGCACTGAAGGTGTCTCCAGCACAGATATTGTAGGGAGGATACTTGCATCTCTAAAGGAGACAGATGGTAAAGATCAAAATGGTACTTCCTTGCAAAAATCCCCAGAAAGTCAACCCAAGAGTGCCAATTTATCTCAATTTCTGCCAACATCCCGACGGATTGTGCAATTCTCTAATGGAAAGGGACCTGGACCAAATGCTCGTGTTGTGTACATTGATGGGGCATTTGATCTCTTTCATGCAGGACATGTTGAGATCTTGAAGAATGCTAGGCAGCTCGGAGACTTTCTACTAGTTGGCATCCACAATGATGAGACTGTCTGTGAACACAGAGGGAAGCATCCAATAATGCATTTACACGAACGTAGTCTTAGTGTATTGGGTTGCCGTTATGTTGATGAAGTCATCATTGGTGCTCCCTGGGAAGTTACCCTGGACATGATAACAACTTTCAACATTTCATCAGTTGTGCATGGGACAGTTTCCGAGTACAACTCCTTGTTTACTGGTGAGAGTGATCCTTATTCTGTTCCCAAGAGCATGGGGATTTTCAAATTACTAGAAAGCCCAAAAAGTATAACAACATCATCAGTATCCCAGAGGATAATTGCAAATCATGATGCTTACTTGAGACGCAATGCCAAAAAGAAGGAGAGTGAGAAGAAGTACTATGCACAGAAGACGTATGTCTCAGGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

419

Amino Acids

46.65

Weight (kDa)

6.6

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	68 - 197	2.2e-26	Cytidylyltransferase-like
CTP_transf_like	PF01467	256 - 345	2.1e-16	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38670
fragaria_vesca	FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_6g09110
malus_domestica	MD04G1180800.v1.1 MD12G1196100.v1.1 MD13G1236200.v1.1 MD16G1241200.v1.1
prunus_persica	Prupe.1G067900_v2.0.a1 Prupe.1G067900_v2.0.a1 Prupe.6G300600_v2.0.a1
pyrus_communis	pycom04g15990 pycom13g20890 pycom16g20190
rosa_chinensis	RchiOBHm_Chr3g0459321 RchiOBHm_Chr4g0398251
rosa_laevigata	RLG00000009374 RLG00000025091
rosa_multiflora	Rmu_sc0006944.1_g000005 Rmu_ssc0000112.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343230 Rroxscaffold_6G00420270
rosa_rugosa	Rorug03G0035300 Rorug04G0007100 Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh3AG093300 Rh4AG084600 Rh4BG082000 Rh4CG092000 Rh4DG077100
rosa_wichuraiana	Rw3G008030 Rw4G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	2 cut(s)	167, 1067
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	5 cut(s)	41, 640, 767, 1046, 1223
AflIII	ACRYGT	2 cut(s)	52, 802
AgsI	TTSAA	5 cut(s)	376, 445, 817, 1009, 1108
AhlI	ACTAGT	1 cut(s)	847
AjnI	CCWGG	3 cut(s)	742, 974, 987
AjuI	GAANNNNNNNTTGG	2 cut(s)	948, 980
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	3 cut(s)	105, 533, 832
AluI	AGCT	3 cut(s)	105, 533, 832
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	8 cut(s)	346, 574, 608, 831, 863, 1180, 1245, 1249
AlwI	GGATC	2 cut(s)	167, 1067
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	80, 493, 829
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	326, 740, 746
AsuHPI	GGTGA	2 cut(s)	488, 1076
AvaII	GGWCC	3 cut(s)	326, 740, 746
BauI	CACGAG	2 cut(s)	100, 756
BbsI	GAAGAC	1 cut(s)	1241
Bbv12I	GWGCWC	1 cut(s)	973
BbvI	GCAGC	3 cut(s)	92, 480, 841
BccI	CCATC	5 cut(s)	26, 203, 494, 614, 767
BceAI	ACGGC	2 cut(s)	93, 927
BciT130I	CCWGG	3 cut(s)	744, 976, 989
BciVI	GTATCC	2 cut(s)	588, 1159
BcoDI	GTCTC	8 cut(s)	346, 574, 608, 831, 863, 1180, 1245, 1249
BcuI	ACTAGT	1 cut(s)	847
BfaI	CTAG	4 cut(s)	825, 848, 1115, 1255
BfuI	GTATCC	2 cut(s)	588, 1159
BglII	AGATCT	1 cut(s)	810
BisI	GCNGC	3 cut(s)	81, 494, 830
BlsI	GCNGC	3 cut(s)	82, 495, 831
BmcAI	AGTACT	1 cut(s)	1223
Bme1390I	CCNGG	3 cut(s)	744, 976, 989
Bme18I	GGWCC	3 cut(s)	326, 740, 746
BmgT120I	GGNCC	3 cut(s)	326, 740, 746
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	3 cut(s)	744, 976, 989
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	5 cut(s)	499, 611, 864, 904, 1165
BmuI	ACTGGG	1 cut(s)	124
BoxI	GACNNNNGTC	1 cut(s)	1241
BpiI	GAAGAC	1 cut(s)	1241
BplI	GAGNNNNNCTC	4 cut(s)	343, 375, 1034, 1066
BpmI	CTGGAG	1 cut(s)	556
BpuEI	CTTGAG	2 cut(s)	271, 1204
BsaJI	CCNNGG	6 cut(s)	261, 342, 519, 974, 975, 987
Bse1I	ACTGG	4 cut(s)	26, 130, 360, 1066
Bse3DI	GCAATG	1 cut(s)	1198
BseBI	CCWGG	3 cut(s)	744, 976, 989
BseDI	CCNNGG	6 cut(s)	261, 342, 519, 974, 975, 987
BseGI	GGATG	6 cut(s)	37, 214, 391, 704, 855, 895
BseMI	GCAATG	1 cut(s)	1198
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	4 cut(s)	26, 130, 360, 1066
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	3 cut(s)	92, 480, 841
BshFI	GGCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	973
BslFI	GGGAC	2 cut(s)	753, 1045
BsmAI	GTCTC	8 cut(s)	346, 574, 608, 831, 863, 1180, 1245, 1249
BsmBI	CGTCTC	1 cut(s)	1180
BsmFI	GGGAC	2 cut(s)	753, 1045
BsmI	GAATGC	3 cut(s)	192, 250, 826
BsnI	GGCC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	973
Bsp1407I	TGTACA	2 cut(s)	39, 765
Bsp143I	GATC	6 cut(s)	159, 220, 628, 784, 810, 1072
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	1171
BspLI	GGNNCC	1 cut(s)	741
BspPI	GGATC	2 cut(s)	167, 1067
BsrDI	GCAATG	1 cut(s)	1198
BsrGI	TGTACA	2 cut(s)	39, 765
BsrI	ACTGG	4 cut(s)	26, 130, 360, 1066
BssECI	CCNNGG	6 cut(s)	261, 342, 519, 974, 975, 987
BssMI	GATC	6 cut(s)	159, 220, 628, 784, 810, 1072
BssSI	CACGAG	2 cut(s)	100, 756
BssT1I	CCWWGG	3 cut(s)	261, 342, 519
Bst2BI	CACGAG	2 cut(s)	100, 756
Bst2UI	CCWGG	3 cut(s)	744, 976, 989
Bst4CI	ACNGT	3 cut(s)	124, 874, 1036
Bst6I	CTCTTC	2 cut(s)	342, 446
BstAUI	TGTACA	2 cut(s)	39, 765
BstC8I	GCNNGC	2 cut(s)	258, 491
BstDEI	CTNAG	3 cut(s)	420, 926, 1246
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	6 cut(s)	37, 214, 391, 704, 855, 895
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	6 cut(s)	162, 223, 631, 787, 813, 1075
BstMAI	GTCTC	8 cut(s)	346, 574, 608, 831, 863, 1180, 1245, 1249
BstMBI	GATC	6 cut(s)	159, 220, 628, 784, 810, 1072
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 530
BstNI	CCWGG	3 cut(s)	744, 976, 989
BstNSI	RCATGY	2 cut(s)	56, 806
BstPAI	GACNNNNGTC	1 cut(s)	1241
BstSCI	CCNGG	3 cut(s)	742, 974, 987
BstV1I	GCAGC	3 cut(s)	92, 480, 841
BstV2I	GAAGAC	1 cut(s)	1241
BstX2I	RGATCY	2 cut(s)	159, 810
BstXI	CCANNNNNNTGG	2 cut(s)	268, 1096
BstYI	RGATCY	2 cut(s)	159, 810
BsuI	GTATCC	2 cut(s)	588, 1159
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	6 cut(s)	37, 214, 391, 704, 855, 895
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	2 cut(s)	258, 491
CciI	TCATGA	1 cut(s)	1171
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	326, 740, 746
CseI	GACGC	1 cut(s)	1197
Csp6I	GTAC	5 cut(s)	40, 639, 766, 1045, 1222
CviJI	RGCY	9 cut(s)	83, 93, 105, 260, 266, 359, 533, 832, 1122
CviKI_1	RGCY	9 cut(s)	83, 93, 105, 260, 266, 359, 533, 832, 1122
CviQI	GTAC	5 cut(s)	40, 639, 766, 1045, 1222
DdeI	CTNAG	3 cut(s)	420, 926, 1246
DpnI	GATC	6 cut(s)	161, 222, 630, 786, 812, 1074
DpnII	GATC	6 cut(s)	159, 220, 628, 784, 810, 1072
Eam1104I	CTCTTC	2 cut(s)	342, 446
EarI	CTCTTC	2 cut(s)	342, 446
Eco130I	CCWWGG	3 cut(s)	261, 342, 519
Eco47I	GGWCC	3 cut(s)	326, 740, 746
Eco57I	CTGAAG	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	740
EcoRII	CCWGG	3 cut(s)	742, 974, 987
EcoT14I	CCWWGG	3 cut(s)	261, 342, 519
EcoT22I	ATGCAT	2 cut(s)	231, 909
ErhI	CCWWGG	3 cut(s)	261, 342, 519
Esp3I	CGTCTC	1 cut(s)	1180
FaqI	GGGAC	2 cut(s)	753, 1045
Fnu4HI	GCNGC	3 cut(s)	81, 494, 830
FokI	GGATG	6 cut(s)	44, 221, 398, 691, 842, 882
Fsp4HI	GCNGC	3 cut(s)	81, 494, 830
FspBI	CTAG	4 cut(s)	825, 848, 1115, 1255
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	3 cut(s)	81, 494, 830
GsuI	CTGGAG	1 cut(s)	556
HaeIII	GGCC	1 cut(s)	93
HgaI	GACGC	1 cut(s)	1197
HhaI	GCGC	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	668
HindII	GTYRAC	1 cut(s)	668
HinfI	GANTC	2 cut(s)	152, 438
HphI	GGTGA	2 cut(s)	488, 1076
Hpy166II	GTNNAC	7 cut(s)	99, 202, 329, 668, 766, 881, 1059
Hpy188I	TCNGA	3 cut(s)	151, 836, 1042
Hpy188III	TCNNGA	4 cut(s)	708, 814, 1172, 1248
Hpy8I	GTNNAC	7 cut(s)	99, 202, 329, 668, 766, 881, 1059
Hpy99I	CGWCG	2 cut(s)	305, 714
HpyAV	CCTTC	2 cut(s)	557, 1198
HpyCH4III	ACNGT	3 cut(s)	124, 874, 1036
HpyCH4IV	ACGT	2 cut(s)	919, 1238
HpyCH4V	TGCA	9 cut(s)	229, 602, 649, 721, 797, 907, 1027, 1166, 1229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 530
HpyF3I	CTNAG	3 cut(s)	420, 926, 1246
HpySE526I	ACGT	2 cut(s)	919, 1238
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	159, 220, 628, 784, 810, 1072
LmnI	GCTCC	2 cut(s)	409, 976
Lsp1109I	GCAGC	3 cut(s)	92, 480, 841
LweI	GCATC	5 cut(s)	499, 611, 864, 904, 1165
MaeI	CTAG	4 cut(s)	825, 848, 1115, 1255
MaeII	ACGT	2 cut(s)	919, 1238
MaeIII	GTNAC	1 cut(s)	982
MalI	GATC	6 cut(s)	161, 222, 630, 786, 812, 1074
MboI	GATC	6 cut(s)	159, 220, 628, 784, 810, 1072
MboII	GAAGA	7 cut(s)	154, 184, 359, 433, 829, 1228, 1246
MflI	RGATCY	2 cut(s)	159, 810
MhlI	GDGCHC	1 cut(s)	973
MluCI	AATT	9 cut(s)	117, 414, 425, 549, 682, 692, 722, 1109, 1161
MlyI	GAGTC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	246, 298, 585, 881, 1149
Mph1103I	ATGCAT	2 cut(s)	231, 909
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	4 cut(s)	51, 243, 477, 864
MspR9I	CCNGG	3 cut(s)	744, 976, 989
Mva1269I	GAATGC	3 cut(s)	192, 250, 826
MvaI	CCWGG	3 cut(s)	744, 976, 989
MwoI	GCNNNNNNNGC	2 cut(s)	297, 530
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	6 cut(s)	159, 220, 628, 784, 810, 1072
NlaIV	GGNNCC	1 cut(s)	741
NmeAIII	GCCGAG	1 cut(s)	69
NsiI	ATGCAT	2 cut(s)	231, 909
NspI	RCATGY	2 cut(s)	56, 806
PagI	TCATGA	1 cut(s)	1171
PasI	CCCWGGG	1 cut(s)	975
PciI	ACATGT	2 cut(s)	52, 802
PctI	GAATGC	3 cut(s)	192, 250, 826
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	82, 495, 831
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	740
PscI	ACATGT	2 cut(s)	52, 802
PshAI	GACNNNNGTC	1 cut(s)	1241
Psp5II	RGGWCCY	1 cut(s)	740
Psp6I	CCWGG	3 cut(s)	742, 974, 987
PspGI	CCWGG	3 cut(s)	742, 974, 987
PspN4I	GGNNCC	1 cut(s)	741
PspPI	GGNCC	3 cut(s)	326, 740, 746
PspPPI	RGGWCCY	1 cut(s)	740
PsuI	RGATCY	2 cut(s)	159, 810
RsaI	GTAC	5 cut(s)	41, 640, 767, 1046, 1223
RsaNI	GTAC	5 cut(s)	40, 639, 766, 1045, 1222
RseI	CAYNNNNRTG	4 cut(s)	51, 243, 477, 864
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	3 cut(s)	81, 494, 830
Sau3AI	GATC	6 cut(s)	159, 220, 628, 784, 810, 1072
Sau96I	GGNCC	3 cut(s)	326, 740, 746
ScaI	AGTACT	1 cut(s)	1223
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	3 cut(s)	744, 976, 989
SduI	GDGCHC	1 cut(s)	973
SetI	ASST	9 cut(s)	107, 328, 334, 535, 568, 745, 834, 922, 1241
SfaNI	GCATC	5 cut(s)	499, 611, 864, 904, 1165
SinI	GGWCC	3 cut(s)	326, 740, 746
SmiMI	CAYNNNNRTG	4 cut(s)	51, 243, 477, 864
SmlI	CTYRAG	2 cut(s)	250, 1183
SmoI	CTYRAG	2 cut(s)	250, 1183
SpeI	ACTAGT	1 cut(s)	847
Sse9I	AATT	9 cut(s)	117, 414, 425, 549, 682, 692, 722, 1109, 1161
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	4 cut(s)	825, 848, 1115, 1255
StyD4I	CCNGG	3 cut(s)	742, 974, 987
StyI	CCWWGG	3 cut(s)	261, 342, 519
TaaI	ACNGT	3 cut(s)	124, 874, 1036
TaiI	ACGT	2 cut(s)	922, 1241
TasI	AATT	9 cut(s)	117, 414, 425, 549, 682, 692, 722, 1109, 1161
TatI	WGTACW	4 cut(s)	39, 765, 1044, 1221
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	3 cut(s)	80, 493, 829
TspDTI	ATGAA	7 cut(s)	24, 402, 418, 426, 782, 969, 1005
TspGWI	ACGGA	1 cut(s)	727
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	3 cut(s)	326, 740, 746
XceI	RCATGY	2 cut(s)	56, 806
XspI	CTAG	4 cut(s)	825, 848, 1115, 1255
ZrmI	AGTACT	1 cut(s)	1223
Zsp2I	ATGCAT	2 cut(s)	231, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.