MD12G1196100.v1.1

Ethanolamine-phosphate

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
27710554 .. 27714773
4220 bp
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UTR
Exon/CDS
Intron
MD12G1196100.v1.1.491

Sequence Viewer

Length: 1287 bp
ATGGGTTTGGAAGATGGGAACTCAGAGAACGCGCGAAGCTGGGCGAGGTTTCTGGCCACGTGTCTCGCCGGTGGGGCGGTGGTGGCGGTGGGGGTCGGCGTCGGGGTGTCGCTTCTGGGTTCACAAGAACGCGGCGGACCTCAGCTTCCTCTGGGACTTCGATGGCGGAGGAAGAAGAACAGACCCGTGCGGGTTTACATGGACGGCTGCTTCGACATGATGCACTACGGCCACTGCAACGCCCTCCGTCAGGCGCGCGCTCTGGGCGACCAATTGGTCGTTGGGGTCGTCAGCGACGCCGAAATCATCGTCAATAAAGGCCCCCCTGTGACTCCTCTCAACGAAAGGATGATTATGGTTAATGCTGTGAAATGGGTTGATGAGGTGATTCCAGATGCACCTTATGCCATAACCGAAGAGTTCATGAAGAAGCTGTTTGATGAATACAATATTGACTATATCATTCATGGAGATGACCCATGTGTGCTTCCTGATGGTACTGATGCTTATGCTCTTGCGAAGAAGGCCGGTCGCTACAAGCAGATCAAGCGGACAGAAGGCGTTTCCAGCACCGACATTGTTGGTCGTATGCTTCTCTGTGTAAGAGAGAGATCTGTTAGTGAAATCCAACAGCATTCTTCCTTGCAAAGACAATTCAGCCACGGTCACAGCCAGAAGTTTGAAGATGGTGGGTCTGGAAGTGGAACCCGTGTGTCTCATTTCCTACCGACATCTCGAAGAATTGTTCAGTTTTCAAATGGAAAGGGGCCTGAATCGGATGCGCGCATAATTTATATAGATGGTGCATTTGATCTTTTCCATGCTGGACATGTGGAGATCTTAAGGAAAGCACGAGAGCTTGGGGATTTTCTTCTTGTTGGAATACACACTGATCAGACTGTCAGTGCTAACAGAGGAGCACATCGCCCAATAATGAACCTTCACGAAAGAAGCCTAAGTGTTTTGGCTTGCCGCCATGTGGATGAGGTTATAATTGGTGCTCCATGGGTAATCTCAAAAGACATGCTCACAACCTTTAACATCTCCTTAGTGGTCCATGGAACGGTAGCAGAGAATAGCAACTTTGAAAAGGAAGAAGGCAACCCATATGAAGTCCCAATCAATTTAGGCATCTTCAAAGTTTTGGAAAGCCCGCTTGATATCACCACTTCCACAATAATTAGAAGGATTGTATCCAATCATGAAGCATACCAGAAACGTAACGAGAAAAAGGCAGCAAGCGAGAAAAGGTATTACGAAAGCAAGGGCTATGTTTCCGGTGACTGA

Protein Analysis

429

Amino Acids

47.47

Weight (kDa)

7.26

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 66 - 195 7.1e-26 Cytidylyltransferase-like
CTP_transf_like PF01467 265 - 395 2e-18 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 992
AasI GACNNNNNNGTC 1 cut(s) 275
AccII CGCG 6 cut(s) 32, 34, 132, 256, 258, 784
AciI CCGC 9 cut(s) 77, 86, 132, 135, 166, 190, 550, 973, 1154
AcoI YGGCCR 2 cut(s) 54, 229
AcvI CACGTG 1 cut(s) 60
AcyI GRCGYC 2 cut(s) 99, 297
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 3 cut(s) 250, 979, 1063
AflII CTTAAG 1 cut(s) 841
AflIII ACRYGT 2 cut(s) 59, 829
AgsI TTSAA 4 cut(s) 683, 756, 1088, 1138
AluBI AGCT 4 cut(s) 39, 145, 433, 859
AluI AGCT 4 cut(s) 39, 145, 433, 859
Alw21I GWGCWC 2 cut(s) 922, 1003
Alw26I GTCTC 2 cut(s) 68, 720
AoxI GGCC 5 cut(s) 54, 229, 319, 525, 767
ApeKI GCWGC 2 cut(s) 207, 1235
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 294, 326
AspLEI GCGC 6 cut(s) 34, 256, 258, 260, 784, 786
AspS9I GGNCC 4 cut(s) 137, 320, 767, 1054
AsuHPI GGTGA 2 cut(s) 397, 1156
AvaII GGWCC 2 cut(s) 137, 1054
BalI TGGCCA 1 cut(s) 56
BauI CACGAG 1 cut(s) 852
BbrPI CACGTG 1 cut(s) 60
Bbv12I GWGCWC 2 cut(s) 922, 1003
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 194, 1247
BccI CCATC 5 cut(s) 8, 156, 488, 680, 794
BceAI ACGGC 2 cut(s) 220, 244
BciVI GTATCC 1 cut(s) 1204
BclI TGATCA 1 cut(s) 892
BcoDI GTCTC 2 cut(s) 68, 720
BfrI CTTAAG 1 cut(s) 841
BfuI GTATCC 1 cut(s) 1204
BglI GCCNNNNNGGC 1 cut(s) 74
BglII AGATCT 2 cut(s) 611, 837
BisI GCNGC 4 cut(s) 133, 208, 973, 1236
BlsI GCNGC 4 cut(s) 134, 209, 974, 1237
Bme18I GGWCC 2 cut(s) 137, 1054
BmgT120I GGNCC 4 cut(s) 137, 320, 767, 1054
BmiI GGNNCC 3 cut(s) 322, 706, 768
BmsI GCATC 5 cut(s) 210, 385, 493, 769, 1140
Bpu10I CCTNAGC 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 60
BsaHI GRCGYC 2 cut(s) 99, 297
BsaJI CCNNGG 3 cut(s) 661, 1004, 1057
BsaWI WCCGGW 1 cut(s) 1277
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 979, 1063
Bse118I RCCGGY 2 cut(s) 68, 527
BseDI CCNNGG 3 cut(s) 661, 1004, 1057
BseGI GGATG 3 cut(s) 354, 784, 988
BseLI CCNNNNNNNGG 3 cut(s) 250, 979, 1063
BseMII CTCAG 2 cut(s) 36, 155
BsePI GCGCGC 3 cut(s) 254, 256, 782
BseRI GAGGAG 2 cut(s) 324, 930
BseXI GCAGC 2 cut(s) 194, 1247
BseYI CCCAGC 1 cut(s) 39
Bsh1236I CGCG 6 cut(s) 32, 34, 132, 256, 258, 784
Bsh1285I CGRYCG 1 cut(s) 532
BshFI GGCC 5 cut(s) 56, 231, 321, 527, 769
BsiEI CGRYCG 1 cut(s) 532
BsiHKAI GWGCWC 2 cut(s) 922, 1003
BsiSI CCGG 3 cut(s) 69, 528, 1278
BslFI GGGAC 2 cut(s) 168, 1100
BslI CCNNNNNNNGG 3 cut(s) 250, 979, 1063
BsmAI GTCTC 2 cut(s) 68, 720
BsmFI GGGAC 2 cut(s) 168, 1100
BsmI GAATGC 1 cut(s) 634
BsnI GGCC 5 cut(s) 56, 231, 321, 527, 769
Bsp1286I GDGCHC 2 cut(s) 922, 1003
Bsp143I GATC 5 cut(s) 543, 611, 811, 837, 892
Bsp19I CCATGG 2 cut(s) 1004, 1057
BspACI CCGC 9 cut(s) 77, 86, 132, 135, 166, 190, 550, 973, 1154
BspANI GGCC 5 cut(s) 56, 231, 321, 527, 769
BspCNI CTCAG 2 cut(s) 35, 154
BspFNI CGCG 6 cut(s) 32, 34, 132, 256, 258, 784
BspHI TCATGA 2 cut(s) 423, 1201
BspLI GGNNCC 3 cut(s) 322, 706, 768
BspTI CTTAAG 1 cut(s) 841
BsrFI RCCGGY 2 cut(s) 68, 527
BssAI RCCGGY 2 cut(s) 68, 527
BssECI CCNNGG 3 cut(s) 661, 1004, 1057
BssHII GCGCGC 3 cut(s) 254, 256, 782
BssMI GATC 5 cut(s) 543, 611, 811, 837, 892
BssNI GRCGYC 2 cut(s) 99, 297
BssSI CACGAG 1 cut(s) 852
BssT1I CCWWGG 2 cut(s) 1004, 1057
Bst2BI CACGAG 1 cut(s) 852
Bst4CI ACNGT 3 cut(s) 665, 901, 1066
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 2 cut(s) 99, 297
BstAFI CTTAAG 1 cut(s) 841
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 60
BstC8I GCNNGC 6 cut(s) 256, 258, 784, 970, 1154, 1240
BstDEI CTNAG 4 cut(s) 22, 141, 956, 1048
BstDSI CCRYGG 3 cut(s) 661, 1004, 1057
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 3 cut(s) 354, 784, 988
BstFNI CGCG 6 cut(s) 32, 34, 132, 256, 258, 784
BstHHI GCGC 6 cut(s) 34, 256, 258, 260, 784, 786
BstKTI GATC 5 cut(s) 546, 614, 814, 840, 895
BstMAI GTCTC 2 cut(s) 68, 720
BstMBI GATC 5 cut(s) 543, 611, 811, 837, 892
BstMCI CGRYCG 1 cut(s) 532
BstMWI GCNNNNNNNGC 7 cut(s) 74, 83, 264, 404, 524, 547, 567
BstNSI RCATGY 2 cut(s) 833, 1027
BstUI CGCG 6 cut(s) 32, 34, 132, 256, 258, 784
BstV1I GCAGC 2 cut(s) 194, 1247
BstX2I RGATCY 2 cut(s) 611, 837
BstYI RGATCY 2 cut(s) 611, 837
BsuI GTATCC 1 cut(s) 1204
BsuRI GGCC 5 cut(s) 56, 231, 321, 527, 769
BtgI CCRYGG 3 cut(s) 661, 1004, 1057
BtgZI GCGATG 1 cut(s) 908
BtsCI GGATG 3 cut(s) 354, 784, 988
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 3 cut(s) 232, 888, 910
Cac8I GCNNGC 6 cut(s) 256, 258, 784, 970, 1154, 1240
CciI TCATGA 2 cut(s) 423, 1201
CfoI GCGC 6 cut(s) 34, 256, 258, 260, 784, 786
Cfr10I RCCGGY 2 cut(s) 68, 527
Cfr13I GGNCC 4 cut(s) 137, 320, 767, 1054
CseI GACGC 2 cut(s) 88, 305
Csp6I GTAC 1 cut(s) 498
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 4 cut(s) 22, 141, 956, 1048
DpnI GATC 5 cut(s) 545, 613, 813, 839, 894
DpnII GATC 5 cut(s) 543, 611, 811, 837, 892
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 2 cut(s) 54, 229
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 2 cut(s) 150, 181
Eco130I CCWWGG 2 cut(s) 1004, 1057
Eco32I GATATC 1 cut(s) 1162
Eco47I GGWCC 2 cut(s) 137, 1054
Eco72I CACGTG 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoO109I RGGNCCY 2 cut(s) 320, 767
EcoRV GATATC 1 cut(s) 1162
EcoT14I CCWWGG 2 cut(s) 1004, 1057
ErhI CCWWGG 2 cut(s) 1004, 1057
FaqI GGGAC 2 cut(s) 168, 1100
FauI CCCGC 2 cut(s) 183, 1161
FauNDI CATATG 1 cut(s) 1108
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 4 cut(s) 133, 208, 973, 1236
FokI GGATG 3 cut(s) 361, 791, 995
Fsp4HI GCNGC 4 cut(s) 133, 208, 973, 1236
GlaI GCGC 6 cut(s) 33, 255, 257, 259, 783, 785
GluI GCNGC 4 cut(s) 133, 208, 973, 1236
GsaI CCCAGC 1 cut(s) 43
HaeIII GGCC 5 cut(s) 56, 231, 321, 527, 769
HapII CCGG 3 cut(s) 69, 528, 1278
HgaI GACGC 2 cut(s) 88, 305
HhaI GCGC 6 cut(s) 34, 256, 258, 260, 784, 786
Hin1I GRCGYC 2 cut(s) 99, 297
Hin6I GCGC 6 cut(s) 32, 254, 256, 258, 782, 784
HinP1I GCGC 6 cut(s) 32, 254, 256, 258, 782, 784
HinfI GANTC 3 cut(s) 331, 388, 773
HpaII CCGG 3 cut(s) 69, 528, 1278
HphI GGTGA 2 cut(s) 397, 1156
Hpy166II GTNNAC 2 cut(s) 122, 196
Hpy188I TCNGA 3 cut(s) 25, 778, 897
Hpy188III TCNNGA 7 cut(s) 392, 424, 491, 696, 735, 944, 1202
Hpy8I GTNNAC 2 cut(s) 122, 196
Hpy99I CGWCG 2 cut(s) 104, 299
HpyAV CCTTC 5 cut(s) 517, 551, 950, 1091, 1179
HpyCH4III ACNGT 3 cut(s) 665, 901, 1066
HpyCH4IV ACGT 2 cut(s) 59, 1219
HpyCH4V TGCA 5 cut(s) 223, 237, 398, 646, 806
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 83, 264, 404, 524, 547, 567
HpyF3I CTNAG 4 cut(s) 22, 141, 956, 1048
HpySE526I ACGT 2 cut(s) 59, 1219
Hsp92I GRCGYC 2 cut(s) 99, 297
HspAI GCGC 6 cut(s) 32, 254, 256, 258, 782, 784
Ksp22I TGATCA 1 cut(s) 892
Kzo9I GATC 5 cut(s) 543, 611, 811, 837, 892
LmnI GCTCC 2 cut(s) 917, 1006
Lsp1109I GCAGC 2 cut(s) 194, 1247
LweI GCATC 5 cut(s) 210, 385, 493, 769, 1140
MaeII ACGT 2 cut(s) 59, 1219
MaeIII GTNAC 4 cut(s) 328, 665, 1220, 1280
MalI GATC 5 cut(s) 545, 613, 813, 839, 894
MboI GATC 5 cut(s) 543, 611, 811, 837, 892
MfeI CAATTG 1 cut(s) 272
MflI RGATCY 2 cut(s) 611, 837
MhlI GDGCHC 2 cut(s) 922, 1003
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 7 cut(s) 272, 653, 741, 789, 993, 1123, 1179
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 2 cut(s) 652, 859
MnlI CCTC 9 cut(s) 39, 150, 159, 162, 254, 345, 376, 908, 979
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 3 cut(s) 360, 842, 1038
MslI CAYNNNNRTG 2 cut(s) 471, 981
Msp20I TGGCCA 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 841
MspI CCGG 3 cut(s) 69, 528, 1278
MunI CAATTG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 634
MvnI CGCG 6 cut(s) 32, 34, 132, 256, 258, 784
MwoI GCNNNNNNNGC 7 cut(s) 74, 83, 264, 404, 524, 547, 567
NcoI CCATGG 2 cut(s) 1004, 1057
NdeI CATATG 1 cut(s) 1108
NdeII GATC 5 cut(s) 543, 611, 811, 837, 892
NlaIV GGNNCC 3 cut(s) 322, 706, 768
NmuCI GTSAC 3 cut(s) 328, 665, 1280
NspI RCATGY 2 cut(s) 833, 1027
PagI TCATGA 2 cut(s) 423, 1201
PauI GCGCGC 3 cut(s) 254, 256, 782
PciI ACATGT 1 cut(s) 829
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 285
PctI GAATGC 1 cut(s) 634
PfeI GAWTC 2 cut(s) 388, 773
PkrI GCNGC 4 cut(s) 134, 209, 974, 1237
PleI GAGTC 1 cut(s) 325
PmaCI CACGTG 1 cut(s) 60
PmlI CACGTG 1 cut(s) 60
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 60
PscI ACATGT 1 cut(s) 829
PsiI TTATAA 1 cut(s) 992
PspCI CACGTG 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 39
PspN4I GGNNCC 3 cut(s) 322, 706, 768
PspPI GGNCC 4 cut(s) 137, 320, 767, 1054
PsuI RGATCY 2 cut(s) 611, 837
PteI GCGCGC 3 cut(s) 254, 256, 782
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
RseI CAYNNNNRTG 2 cut(s) 471, 981
SaqAI TTAA 3 cut(s) 360, 842, 1038
SatI GCNGC 4 cut(s) 133, 208, 973, 1236
Sau3AI GATC 5 cut(s) 543, 611, 811, 837, 892
Sau96I GGNCC 4 cut(s) 137, 320, 767, 1054
SchI GAGTC 1 cut(s) 325
SduI GDGCHC 2 cut(s) 922, 1003
SfaNI GCATC 5 cut(s) 210, 385, 493, 769, 1140
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 2 cut(s) 137, 1054
SmiMI CAYNNNNRTG 2 cut(s) 471, 981
SmlI CTYRAG 1 cut(s) 841
SmoI CTYRAG 1 cut(s) 841
Sse9I AATT 7 cut(s) 272, 653, 741, 789, 993, 1123, 1179
SsiI CCGC 9 cut(s) 77, 86, 132, 135, 166, 190, 550, 973, 1154
SspI AATATT 1 cut(s) 451
StyI CCWWGG 2 cut(s) 1004, 1057
TaaI ACNGT 3 cut(s) 665, 901, 1066
TaiI ACGT 2 cut(s) 62, 1222
TaqI TCGA 3 cut(s) 160, 213, 736
TasI AATT 7 cut(s) 272, 653, 741, 789, 993, 1123, 1179
TauI GCSGC 2 cut(s) 135, 975
TfiI GAWTC 2 cut(s) 388, 773
Tru1I TTAA 3 cut(s) 360, 842, 1038
Tru9I TTAA 3 cut(s) 360, 842, 1038
TscAI CASTG 3 cut(s) 239, 895, 910
TseFI GTSAC 3 cut(s) 328, 665, 1280
TseI GCWGC 2 cut(s) 207, 1235
Tsp45I GTSAC 3 cut(s) 328, 665, 1280
TspDTI ATGAA 7 cut(s) 412, 440, 455, 456, 950, 1125, 1218
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 3 cut(s) 239, 895, 910
Vha464I CTTAAG 1 cut(s) 841
VpaK11BI GGWCC 2 cut(s) 137, 1054
XagI CCTNNNNNAGG 1 cut(s) 248
XceI RCATGY 2 cut(s) 833, 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.