Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003202

Physical Location & Seq

Genomic Coordinates Reverse (-)

27288513 .. 27292842

Gene Structure 4330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G300600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGGTTTGGAAGATGGGAACTCAGAGAACGCTCGAAGCTGGGCGAGGTTTCTAGCCACGTGCCTCGTCGGAGGGGTGGTGGTGGCGGTGGGGGTCGGCTTTGGGGTGTCTCTGTTAGGCTCACAGGAACGTCATGGCCTTCAGCTTCCTCTGGGATTTCCATGGCGGAGGAAGAAGAACAGACCTGTCCGCGTTTACATGGACGGCTGCTTTGACATGATGCACTACGGCCACTGCAACGCGCTCCGTCAGGCACGTGCCCTCGGCGACCAATTGGTTGTCGGCGTTGTCAGCGACGCTGAAATCATCGTCAACAAAGGCCCCCCTGTTACTCCTCTCGATGAAAGGATGATTATGGTTAATGCTGTGAAATGGGTTGATGAGGTTATTCCGGATGCACCTTATGCTATAACCGAAGAGTTCATGAAGAAACTGTTTGATGAATACAATATAGACTATATCATTCATGGAGATGACCCATGTGTTCTTCCTGATGGAACTGACGCTTATGCTCTTGCCAAGAAGGCTGGTCGCTACAAGCAGATCAAACGCACAGAAGGGGTCTCCAGCACAGACATTGTTGGTCGTATGCTTCTCTGTGTAAGAGAGAGATCGGTTAGTGAGAACCAGCACCATTCTTCCTTGCAGAGACAATTCAGCCATGGTCACAGTCAGAAATTTGAAGATGGTGGATCTGGAAGCGGAACTCGTGTGTCTCATTTCCTACCAACATCTCGAAGAATTGTTCAGTTCTCAAATGGGAAAGGTCCTCAGTCGGACGCACGCATAGTTTATATAGATGGTGCTTTTGATCTTTTCCATGCTGGACATGTGGAGATCTTAAGGATTGCGCGAGAGCTTGGGGATTTTCTTCTTGTTGGAATACACACTGATCAGACTGTCAGTGCTCATAGAGGAGCACATCGTCCAATCATGAACCTTCACGAAAGAAGCCTGAGTGTTCTGGCTTGCCGGCATGTGGATGAAGTTATAATCGGTGCTCCATGGGAAATTTCAAAAGACGTGATCACCACCTTTAACATCTCTTTAGTTGTCCACGGAACGGTAGCAGAGAATAACAATTTTCAGAAGGAACAAGGCAATCCATATGAAGTTCCAATCAGTATGGGTATCTTCAAAGTTTTGGACAGCCCCCTTGATATCACTACTTCCACGATAATTAGGAGGATTGTATCCAATCATGAAGCATACCAGATACGTAATGAGAAGAAGGCAGCAAGTGAGAAAAAGTATTATGAAGGCAAGTCTTATGTTTCTGGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0016021 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:0098573 GO:0098588 GO:0098805 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

429

Amino Acids

47.61

Weight (kDa)

6.81

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38670
fragaria_vesca	FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_6g09110
malus_domestica	MD04G1180800.v1.1 MD12G1196100.v1.1 MD13G1236200.v1.1 MD16G1241200.v1.1
prunus_persica	Prupe.1G067900_v2.0.a1 Prupe.1G067900_v2.0.a1 Prupe.6G300600_v2.0.a1
pyrus_communis	pycom04g15990 pycom13g20890 pycom16g20190
rosa_chinensis	RchiOBHm_Chr3g0459321 RchiOBHm_Chr4g0398251
rosa_laevigata	RLG00000009374 RLG00000025091
rosa_multiflora	Rmu_sc0006944.1_g000005 Rmu_ssc0000112.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343230 Rroxscaffold_6G00420270
rosa_rugosa	Rorug03G0035300 Rorug04G0007100 Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh3AG093300 Rh4AG084600 Rh4BG082000 Rh4CG092000 Rh4DG077100
rosa_wichuraiana	Rw3G008030 Rw4G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	992
AccII	CGCG	3 cut(s)	192, 242, 853
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	4 cut(s)	86, 166, 190, 702
AclWI	GGATC	1 cut(s)	700
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	2 cut(s)	677, 1011
AcuI	CTGAAG	1 cut(s)	125
AcvI	CACGTG	2 cut(s)	60, 257
AfiI	CCNNNNNNNGG	2 cut(s)	979, 1063
AflII	CTTAAG	1 cut(s)	841
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	3 cut(s)	683, 1017, 1138
AjiI	CACGTC	1 cut(s)	1024
AluBI	AGCT	3 cut(s)	39, 145, 859
AluI	AGCT	3 cut(s)	39, 145, 859
Alw21I	GWGCWC	3 cut(s)	910, 922, 1003
Alw26I	GTCTC	4 cut(s)	114, 568, 643, 720
AlwI	GGATC	1 cut(s)	700
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	3 cut(s)	136, 229, 319
ApeKI	GCWGC	2 cut(s)	207, 1235
ApoI	RAATTY	2 cut(s)	677, 1011
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	2 cut(s)	244, 853
AspS9I	GGNCC	2 cut(s)	320, 767
AsuHPI	GGTGA	1 cut(s)	1021
AvaII	GGWCC	1 cut(s)	767
BaeGI	GKGCMC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	708
BbrPI	CACGTG	2 cut(s)	60, 257
Bbv12I	GWGCWC	3 cut(s)	910, 922, 1003
BbvI	GCAGC	2 cut(s)	194, 1247
BccI	CCATC	4 cut(s)	8, 488, 680, 794
BceAI	ACGGC	2 cut(s)	220, 244
BciVI	GTATCC	1 cut(s)	1204
BclI	TGATCA	2 cut(s)	892, 1026
BcoDI	GTCTC	4 cut(s)	114, 568, 643, 720
BfaI	CTAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	841
BfuI	GTATCC	1 cut(s)	1204
BglI	GCCNNNNNGGC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	837
BisI	GCNGC	2 cut(s)	208, 1236
BlsI	GCNGC	2 cut(s)	209, 1237
Bme18I	GGWCC	1 cut(s)	767
BmgBI	CACGTC	1 cut(s)	1024
BmgT120I	GGNCC	2 cut(s)	320, 767
BmiI	GGNNCC	1 cut(s)	322
BmsI	GCATC	2 cut(s)	210, 385
BpmI	CTGGAG	1 cut(s)	550
BsaAI	YACGTR	3 cut(s)	60, 257, 1220
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	5 cut(s)	161, 262, 661, 1004, 1057
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	979, 1063
Bse118I	RCCGGY	1 cut(s)	972
BseAI	TCCGGA	1 cut(s)	391
BseDI	CCNNGG	5 cut(s)	161, 262, 661, 1004, 1057
BseGI	GGATG	3 cut(s)	354, 400, 988
BseLI	CCNNNNNNNGG	2 cut(s)	979, 1063
BseMII	CTCAG	3 cut(s)	36, 785, 947
BseRI	GAGGAG	2 cut(s)	324, 930
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	194, 1247
BseYI	CCCAGC	1 cut(s)	39
Bsh1236I	CGCG	3 cut(s)	192, 242, 853
BshFI	GGCC	3 cut(s)	138, 231, 321
BsiHKAI	GWGCWC	3 cut(s)	910, 922, 1003
BsiSI	CCGG	2 cut(s)	392, 973
BslI	CCNNNNNNNGG	2 cut(s)	979, 1063
BsmAI	GTCTC	4 cut(s)	114, 568, 643, 720
BsnI	GGCC	3 cut(s)	138, 231, 321
Bso31I	GGTCTC	1 cut(s)	568
Bsp1286I	GDGCHC	4 cut(s)	262, 910, 922, 1003
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	7 cut(s)	543, 611, 692, 811, 837, 892, 1026
Bsp19I	CCATGG	3 cut(s)	161, 661, 1004
BspACI	CCGC	4 cut(s)	86, 166, 190, 702
BspANI	GGCC	3 cut(s)	138, 231, 321
BspCNI	CTCAG	3 cut(s)	35, 784, 948
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	3 cut(s)	192, 242, 853
BspHI	TCATGA	3 cut(s)	423, 933, 1201
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	700
BspTI	CTTAAG	1 cut(s)	841
BspTNI	GGTCTC	1 cut(s)	568
BsrFI	RCCGGY	1 cut(s)	972
BssAI	RCCGGY	1 cut(s)	972
BssECI	CCNNGG	5 cut(s)	161, 262, 661, 1004, 1057
BssMI	GATC	7 cut(s)	543, 611, 692, 811, 837, 892, 1026
BssSI	CACGAG	1 cut(s)	708
BssT1I	CCWWGG	3 cut(s)	161, 661, 1004
Bst2BI	CACGAG	1 cut(s)	708
Bst4CI	ACNGT	4 cut(s)	435, 671, 901, 1066
Bst6I	CTCTTC	1 cut(s)	411
BstAFI	CTTAAG	1 cut(s)	841
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBAI	YACGTR	3 cut(s)	60, 257, 1220
BstC8I	GCNNGC	3 cut(s)	784, 970, 974
BstDEI	CTNAG	3 cut(s)	22, 771, 956
BstDSI	CCRYGG	4 cut(s)	161, 661, 1004, 1057
BstF5I	GGATG	3 cut(s)	354, 400, 988
BstFNI	CGCG	3 cut(s)	192, 242, 853
BstHHI	GCGC	2 cut(s)	244, 853
BstKTI	GATC	7 cut(s)	546, 614, 695, 814, 840, 895, 1029
BstMAI	GTCTC	4 cut(s)	114, 568, 643, 720
BstMBI	GATC	7 cut(s)	543, 611, 692, 811, 837, 892, 1026
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 404, 524
BstNSI	RCATGY	2 cut(s)	833, 980
BstSLI	GKGCMC	1 cut(s)	262
BstSNI	TACGTA	1 cut(s)	1220
BstUI	CGCG	3 cut(s)	192, 242, 853
BstV1I	GCAGC	2 cut(s)	194, 1247
BstX2I	RGATCY	2 cut(s)	692, 837
BstYI	RGATCY	2 cut(s)	692, 837
BsuI	GTATCC	1 cut(s)	1204
BsuRI	GGCC	3 cut(s)	138, 231, 321
BtgI	CCRYGG	4 cut(s)	161, 661, 1004, 1057
BtrI	CACGTC	1 cut(s)	1024
BtsCI	GGATG	3 cut(s)	354, 400, 988
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	232, 888, 910
Cac8I	GCNNGC	3 cut(s)	784, 970, 974
CciI	TCATGA	3 cut(s)	423, 933, 1201
CfoI	GCGC	2 cut(s)	244, 853
Cfr10I	RCCGGY	1 cut(s)	972
Cfr13I	GGNCC	2 cut(s)	320, 767
CseI	GACGC	3 cut(s)	305, 512, 788
DdeI	CTNAG	3 cut(s)	22, 771, 956
DpnI	GATC	7 cut(s)	545, 613, 694, 813, 839, 894, 1028
DpnII	GATC	7 cut(s)	543, 611, 692, 811, 837, 892, 1026
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	181
Eco105I	TACGTA	1 cut(s)	1220
Eco130I	CCWWGG	3 cut(s)	161, 661, 1004
Eco31I	GGTCTC	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	1162
Eco47I	GGWCC	1 cut(s)	767
Eco57I	CTGAAG	1 cut(s)	125
Eco72I	CACGTG	2 cut(s)	60, 257
EcoO109I	RGGNCCY	2 cut(s)	320, 767
EcoRV	GATATC	1 cut(s)	1162
EcoT14I	CCWWGG	3 cut(s)	161, 661, 1004
ErhI	CCWWGG	3 cut(s)	161, 661, 1004
FauNDI	CATATG	1 cut(s)	1108
FbaI	TGATCA	2 cut(s)	892, 1026
Fnu4HI	GCNGC	2 cut(s)	208, 1236
FokI	GGATG	3 cut(s)	361, 407, 995
Fsp4HI	GCNGC	2 cut(s)	208, 1236
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	243, 852
GluI	GCNGC	2 cut(s)	208, 1236
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	550
HaeIII	GGCC	3 cut(s)	138, 231, 321
HapII	CCGG	2 cut(s)	392, 973
HgaI	GACGC	3 cut(s)	305, 512, 788
HhaI	GCGC	2 cut(s)	244, 853
Hin6I	GCGC	2 cut(s)	242, 851
HinP1I	GCGC	2 cut(s)	242, 851
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HpaII	CCGG	2 cut(s)	392, 973
HphI	GGTGA	1 cut(s)	1021
Hpy166II	GTNNAC	3 cut(s)	196, 313, 1057
Hpy188I	TCNGA	6 cut(s)	25, 71, 675, 778, 897, 1089
Hpy188III	TCNNGA	9 cut(s)	338, 392, 424, 491, 696, 735, 934, 944, 1202
Hpy8I	GTNNAC	3 cut(s)	196, 313, 1057
Hpy99I	CGWCG	2 cut(s)	71, 299
HpyAV	CCTTC	7 cut(s)	149, 517, 551, 950, 1084, 1225, 1253
HpyCH4III	ACNGT	4 cut(s)	435, 671, 901, 1066
HpyCH4IV	ACGT	5 cut(s)	59, 130, 256, 1023, 1219
HpyCH4V	TGCA	4 cut(s)	223, 237, 398, 646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 404, 524
HpyF3I	CTNAG	3 cut(s)	22, 771, 956
HpySE526I	ACGT	5 cut(s)	59, 130, 256, 1023, 1219
HspAI	GCGC	2 cut(s)	242, 851
Kpn2I	TCCGGA	1 cut(s)	391
KroI	GCCGGC	1 cut(s)	972
KroNI	GCCGGC	1 cut(s)	974
Ksp22I	TGATCA	2 cut(s)	892, 1026
Kzo9I	GATC	7 cut(s)	543, 611, 692, 811, 837, 892, 1026
LmnI	GCTCC	3 cut(s)	249, 917, 1006
Lsp1109I	GCAGC	2 cut(s)	194, 1247
LweI	GCATC	2 cut(s)	210, 385
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	5 cut(s)	59, 130, 256, 1023, 1219
MaeIII	GTNAC	3 cut(s)	328, 665, 1280
MalI	GATC	7 cut(s)	545, 613, 694, 813, 839, 894, 1028
MboI	GATC	7 cut(s)	543, 611, 692, 811, 837, 892, 1026
MfeI	CAATTG	1 cut(s)	272
MflI	RGATCY	2 cut(s)	692, 837
MhlI	GDGCHC	4 cut(s)	262, 910, 922, 1003
MluCI	AATT	7 cut(s)	272, 653, 677, 741, 1011, 1081, 1179
MmeI	TCCRAC	3 cut(s)	49, 756, 859
MroI	TCCGGA	1 cut(s)	391
MroNI	GCCGGC	1 cut(s)	972
MseI	TTAA	3 cut(s)	360, 842, 1038
MslI	CAYNNNNRTG	2 cut(s)	471, 981
MspCI	CTTAAG	1 cut(s)	841
MspI	CCGG	2 cut(s)	392, 973
MunI	CAATTG	1 cut(s)	272
MvnI	CGCG	3 cut(s)	192, 242, 853
MwoI	GCNNNNNNNGC	3 cut(s)	291, 404, 524
NaeI	GCCGGC	1 cut(s)	974
NcoI	CCATGG	3 cut(s)	161, 661, 1004
NdeI	CATATG	1 cut(s)	1108
NdeII	GATC	7 cut(s)	543, 611, 692, 811, 837, 892, 1026
NgoMIV	GCCGGC	1 cut(s)	972
NlaIV	GGNNCC	1 cut(s)	322
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	2 cut(s)	665, 1280
NspI	RCATGY	2 cut(s)	833, 980
PagI	TCATGA	3 cut(s)	423, 933, 1201
PciI	ACATGT	1 cut(s)	829
PdiI	GCCGGC	1 cut(s)	974
PkrI	GCNGC	2 cut(s)	209, 1237
PmaCI	CACGTG	2 cut(s)	60, 257
PmlI	CACGTG	2 cut(s)	60, 257
Ppu21I	YACGTR	3 cut(s)	60, 257, 1220
PpuMI	RGGWCCY	1 cut(s)	767
PscI	ACATGT	1 cut(s)	829
PsiI	TTATAA	1 cut(s)	992
Psp5II	RGGWCCY	1 cut(s)	767
PspCI	CACGTG	2 cut(s)	60, 257
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	320, 767
PspPPI	RGGWCCY	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	692, 837
RseI	CAYNNNNRTG	2 cut(s)	471, 981
SaqAI	TTAA	3 cut(s)	360, 842, 1038
SatI	GCNGC	2 cut(s)	208, 1236
Sau3AI	GATC	7 cut(s)	543, 611, 692, 811, 837, 892, 1026
Sau96I	GGNCC	2 cut(s)	320, 767
SduI	GDGCHC	4 cut(s)	262, 910, 922, 1003
SfaNI	GCATC	2 cut(s)	210, 385
SinI	GGWCC	1 cut(s)	767
SmiMI	CAYNNNNRTG	2 cut(s)	471, 981
SmlI	CTYRAG	1 cut(s)	841
SmoI	CTYRAG	1 cut(s)	841
SnaBI	TACGTA	1 cut(s)	1220
Sse9I	AATT	7 cut(s)	272, 653, 677, 741, 1011, 1081, 1179
SsiI	CCGC	4 cut(s)	86, 166, 190, 702
SspMI	CTAG	1 cut(s)	53
StyI	CCWWGG	3 cut(s)	161, 661, 1004
TaaI	ACNGT	4 cut(s)	435, 671, 901, 1066
TaiI	ACGT	5 cut(s)	62, 133, 259, 1026, 1222
TaqI	TCGA	3 cut(s)	34, 339, 736
TasI	AATT	7 cut(s)	272, 653, 677, 741, 1011, 1081, 1179
Tru1I	TTAA	3 cut(s)	360, 842, 1038
Tru9I	TTAA	3 cut(s)	360, 842, 1038
TscAI	CASTG	3 cut(s)	239, 895, 910
TseFI	GTSAC	2 cut(s)	665, 1280
TseI	GCWGC	2 cut(s)	207, 1235
Tsp45I	GTSAC	2 cut(s)	665, 1280
TspGWI	ACGGA	2 cut(s)	236, 1074
TspRI	CASTG	3 cut(s)	239, 895, 910
Vha464I	CTTAAG	1 cut(s)	841
VpaK11BI	GGWCC	1 cut(s)	767
XapI	RAATTY	2 cut(s)	677, 1011
XceI	RCATGY	2 cut(s)	833, 980
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.