Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003202

Physical Location & Seq

Genomic Coordinates Reverse (-)

12526339 .. 12531928

Gene Structure 5590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAGTATGAGACTAACAACTGGATTTGGGATGGAGTGTATAACCACCCACATGTCTTTGGTGGTCTAATGCTCACGGCTGCCTTGCTCGGCTTGTCCACGAGCTATTTTGGTGGAATTTCGGTTCCTCAGTTGCCTTACCTATGGTCTGATTCCGGGATTTTCCATAAGAAGAAATCCGAGAAGAAGCGCATTCGGGTGTACATGGATGGGTGTTTTGATCTCATGCATTACGGCCATGCCAATGCTCTGAGGCAAGCCAAGGCTCTGGGGGATGAGTTAGTGGTTGGGGTTGTTAGCGACGAAGAGATCATTGCCAATAAAGGTCCCCCCGTTTTGTCCATGGAAGAGAGACTGGCTCTAGTTAGCGGGTTGAAGTGGGTGGATGAAGTCATAGCCAGTGCTCCTTATGAAATCACTGAACAATTCATGAACAGACTCTTCAATGAGCATAAAATTGACTATATCATACATGGTGATGATCCTTGCCTGCTTCCAGATGGAACTGATGCCTATGCCTTGGCAAAGAAAGCTGGCCGCTACAAACAGATCAAACGCACTGAAGGTGTCTCCAGCACCGATATTGTAGGGAGGATACTTTCTTCTTTAAAGGAGACAAATAATACGTCTTCACATGGAGACCCTTGTGAAGAAAGTCAATCCAAGAGCGCCCAATTATCTCAATTTCTGCCAACATCCCGACGAATTGTGCAATTCTCCAATGGAAAGGCTCCTGGACCAAATGCTCGTATTGTGTACATTGATGGGGCATTTGATCTCTTCCATGCTGGACATGTTGAGATTCTGAAGAATGCTAGGCAGCTTGGAGACTTTTTACTAGTTGGCATCCACAATGATCACACTGTGAGTGAACACAGAGGCAAGCATCCAATAATGCATTTACATGAACGTAGTCTTGGTGTGTTGGGTTGCCGCTATGTTGATGAGGTCATCATTGGTGCTCCTTGGGAAATTACCATGGATATGATAACAACTTTCAACATTTCATTGGTAGTGCGTGGGACAGTTTCTGAGTACAACTCCTCGTTTACTGGTGAAAGTGATCCTTATTCTGTTCCCAAGAGCATGGGGATTTTCCAAGTACTTGAAAGCCCAAAAGATATAACAACAACATCAGTATCTCACAGGATAATTGCAAATCATGATGCTTACCTGAAACGCAACGCCAGGAAAACAGCAAGTGAAAAGAAATACTACGAACAGAAGAAATATGTTTCAGGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

415

Amino Acids

46.38

Weight (kDa)

6.42

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	68 - 197	1.1e-25	Cytidylyltransferase-like
CTP_transf_like	PF01467	253 - 342	4.6e-17	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38670
fragaria_vesca	FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_6g09110
malus_domestica	MD04G1180800.v1.1 MD12G1196100.v1.1 MD13G1236200.v1.1 MD16G1241200.v1.1
prunus_persica	Prupe.1G067900_v2.0.a1 Prupe.1G067900_v2.0.a1 Prupe.6G300600_v2.0.a1
pyrus_communis	pycom04g15990 pycom13g20890 pycom16g20190
rosa_chinensis	RchiOBHm_Chr3g0459321 RchiOBHm_Chr4g0398251
rosa_laevigata	RLG00000009374 RLG00000025091
rosa_multiflora	Rmu_sc0006944.1_g000005 Rmu_ssc0000112.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343230 Rroxscaffold_6G00420270
rosa_rugosa	Rorug03G0035300 Rorug04G0007100 Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh3AG093300 Rh4AG084600 Rh4BG082000 Rh4CG092000 Rh4DG077100
rosa_wichuraiana	Rw3G008030 Rw4G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	369, 538, 934
AclWI	GGATC	2 cut(s)	476, 1058
AcoI	YGGCCR	2 cut(s)	235, 535
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	2 cut(s)	582, 827
AdeI	CACNNNGTG	1 cut(s)	865
AfaI	GTAC	4 cut(s)	203, 758, 1037, 1104
AflIII	ACRYGT	2 cut(s)	52, 793
AgsI	TTSAA	4 cut(s)	376, 445, 1000, 1109
AhlI	ACTAGT	1 cut(s)	838
AjnI	CCWGG	2 cut(s)	733, 1187
AjuI	GAANNNNNNNTTGG	2 cut(s)	900, 932
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	3 cut(s)	105, 533, 823
AluI	AGCT	3 cut(s)	105, 533, 823
Alw21I	GWGCWC	2 cut(s)	406, 964
Alw26I	GTCTC	6 cut(s)	5, 346, 574, 608, 633, 822
AlwI	GGATC	2 cut(s)	476, 1058
AlwNI	CAGNNNCTG	1 cut(s)	1031
AoxI	GGCC	2 cut(s)	235, 535
ApeKI	GCWGC	2 cut(s)	80, 820
ApoI	RAATTY	1 cut(s)	117
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
AspLEI	GCGC	2 cut(s)	192, 671
AspS9I	GGNCC	2 cut(s)	326, 737
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	488, 1067
AvaII	GGWCC	2 cut(s)	326, 737
BaeI	ACNNNNGTAYC	2 cut(s)	1122, 1155
BauI	CACGAG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	621
Bbv12I	GWGCWC	2 cut(s)	406, 964
BbvI	GCAGC	2 cut(s)	67, 832
BccI	CCATC	4 cut(s)	26, 203, 494, 758
BceAI	ACGGC	2 cut(s)	93, 250
BciT130I	CCWGG	2 cut(s)	735, 1189
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	856
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	6 cut(s)	5, 346, 574, 608, 633, 822
BcuI	ACTAGT	1 cut(s)	838
BfaI	CTAG	4 cut(s)	362, 816, 839, 1246
BfoI	RGCGCY	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	4 cut(s)	81, 538, 821, 934
BlsI	GCNGC	4 cut(s)	82, 539, 822, 935
BmcAI	AGTACT	1 cut(s)	1104
Bme1390I	CCNGG	3 cut(s)	157, 735, 1189
Bme18I	GGWCC	2 cut(s)	326, 737
BmgT120I	GGNCC	2 cut(s)	326, 737
BmiI	GGNNCC	3 cut(s)	126, 328, 732
BmrFI	CCNGG	3 cut(s)	157, 735, 1189
BmsI	GCATC	4 cut(s)	499, 855, 895, 1156
BpiI	GAAGAC	1 cut(s)	621
BplI	GAGNNNNNCTC	4 cut(s)	343, 375, 1025, 1057
BpmI	CTGGAG	1 cut(s)	556
BpuMI	CCSGG	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	633
BsaJI	CCNNGG	5 cut(s)	261, 342, 519, 965, 978
Bse1I	ACTGG	4 cut(s)	26, 360, 399, 1057
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	735, 1189
BseDI	CCNNGG	5 cut(s)	261, 342, 519, 965, 978
BseGI	GGATG	7 cut(s)	37, 214, 280, 391, 695, 846, 886
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	143, 242, 1023
BseNI	ACTGG	4 cut(s)	26, 360, 399, 1057
BseRI	GAGGAG	1 cut(s)	1033
BseXI	GCAGC	2 cut(s)	67, 832
BshFI	GGCC	2 cut(s)	237, 537
BsiHKAI	GWGCWC	2 cut(s)	406, 964
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	2 cut(s)	312, 1036
BsmAI	GTCTC	6 cut(s)	5, 346, 574, 608, 633, 822
BsmFI	GGGAC	2 cut(s)	312, 1036
BsmI	GAATGC	2 cut(s)	192, 817
BsnI	GGCC	2 cut(s)	237, 537
Bso31I	GGTCTC	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	406, 964
Bsp1407I	TGTACA	2 cut(s)	201, 756
Bsp143I	GATC	7 cut(s)	220, 309, 481, 549, 775, 856, 1063
Bsp19I	CCATGG	2 cut(s)	342, 978
BspACI	CCGC	3 cut(s)	369, 538, 934
BspANI	GGCC	2 cut(s)	237, 537
BspCNI	CTCAG	3 cut(s)	142, 243, 1024
BspHI	TCATGA	2 cut(s)	429, 1162
BspLI	GGNNCC	3 cut(s)	126, 328, 732
BspPI	GGATC	2 cut(s)	476, 1058
BspTNI	GGTCTC	1 cut(s)	633
BsrDI	GCAATG	1 cut(s)	312
BsrGI	TGTACA	2 cut(s)	201, 756
BsrI	ACTGG	4 cut(s)	26, 360, 399, 1057
BssECI	CCNNGG	5 cut(s)	261, 342, 519, 965, 978
BssMI	GATC	7 cut(s)	220, 309, 481, 549, 775, 856, 1063
BssSI	CACGAG	1 cut(s)	100
BssT1I	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	2 cut(s)	735, 1189
Bst4CI	ACNGT	2 cut(s)	865, 1027
Bst6I	CTCTTC	4 cut(s)	300, 342, 446, 785
BstAUI	TGTACA	2 cut(s)	201, 756
BstC8I	GCNNGC	4 cut(s)	258, 491, 535, 884
BstDEI	CTNAG	3 cut(s)	129, 251, 1032
BstDSI	CCRYGG	2 cut(s)	342, 978
BstF5I	GGATG	7 cut(s)	37, 214, 280, 391, 695, 846, 886
BstH2I	RGCGCY	1 cut(s)	672
BstHHI	GCGC	2 cut(s)	192, 671
BstKTI	GATC	7 cut(s)	223, 312, 484, 552, 778, 859, 1066
BstMAI	GTCTC	6 cut(s)	5, 346, 574, 608, 633, 822
BstMBI	GATC	7 cut(s)	220, 309, 481, 549, 775, 856, 1063
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	2 cut(s)	735, 1189
BstNSI	RCATGY	2 cut(s)	56, 797
BstSCI	CCNGG	3 cut(s)	155, 733, 1187
BstV1I	GCAGC	2 cut(s)	67, 832
BstV2I	GAAGAC	1 cut(s)	621
BstXI	CCANNNNNNTGG	2 cut(s)	268, 1087
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	237, 537
BtgI	CCRYGG	2 cut(s)	342, 978
BtsCI	GGATG	7 cut(s)	37, 214, 280, 391, 695, 846, 886
BtsIMutI	CAGTG	4 cut(s)	406, 417, 558, 861
Cac8I	GCNNGC	4 cut(s)	258, 491, 535, 884
CaiI	CAGNNNCTG	1 cut(s)	1031
CciI	TCATGA	2 cut(s)	429, 1162
CfoI	GCGC	2 cut(s)	192, 671
Cfr13I	GGNCC	2 cut(s)	326, 737
Csp6I	GTAC	4 cut(s)	202, 757, 1036, 1103
CviQI	GTAC	4 cut(s)	202, 757, 1036, 1103
DdeI	CTNAG	3 cut(s)	129, 251, 1032
DpnI	GATC	7 cut(s)	222, 311, 483, 551, 777, 858, 1065
DpnII	GATC	7 cut(s)	220, 309, 481, 549, 775, 856, 1063
DraI	TTTAAA	1 cut(s)	609
DraIII	CACNNNGTG	1 cut(s)	865
EaeI	YGGCCR	2 cut(s)	235, 535
Eam1104I	CTCTTC	4 cut(s)	300, 342, 446, 785
EarI	CTCTTC	4 cut(s)	300, 342, 446, 785
Eco130I	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
Eco31I	GGTCTC	1 cut(s)	633
Eco47I	GGWCC	2 cut(s)	326, 737
Eco57I	CTGAAG	2 cut(s)	582, 827
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	733, 1187
EcoT14I	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
EcoT22I	ATGCAT	2 cut(s)	231, 900
ErhI	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
FalI	AAGNNNNNCTT	2 cut(s)	1051, 1083
FaqI	GGGAC	2 cut(s)	312, 1036
FauI	CCCGC	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	4 cut(s)	81, 538, 821, 934
FokI	GGATG	7 cut(s)	44, 221, 287, 398, 682, 833, 873
Fsp4HI	GCNGC	4 cut(s)	81, 538, 821, 934
FspBI	CTAG	4 cut(s)	362, 816, 839, 1246
GlaI	GCGC	2 cut(s)	191, 670
GluI	GCNGC	4 cut(s)	81, 538, 821, 934
GsuI	CTGGAG	1 cut(s)	556
HaeII	RGCGCY	1 cut(s)	672
HaeIII	GGCC	2 cut(s)	237, 537
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	2 cut(s)	192, 671
Hin6I	GCGC	2 cut(s)	190, 669
HinP1I	GCGC	2 cut(s)	190, 669
HinfI	GANTC	3 cut(s)	152, 438, 802
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	488, 1067
Hpy166II	GTNNAC	5 cut(s)	99, 202, 757, 872, 1050
Hpy188I	TCNGA	5 cut(s)	151, 181, 252, 807, 1033
Hpy188III	TCNNGA	4 cut(s)	430, 497, 699, 1163
Hpy8I	GTNNAC	5 cut(s)	99, 202, 757, 872, 1050
Hpy99I	CGWCG	2 cut(s)	305, 705
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	2 cut(s)	865, 1027
HpyCH4IV	ACGT	2 cut(s)	626, 910
HpyCH4V	TGCA	4 cut(s)	229, 712, 898, 1157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	3 cut(s)	129, 251, 1032
HpySE526I	ACGT	2 cut(s)	626, 910
HspAI	GCGC	2 cut(s)	190, 669
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	7 cut(s)	220, 309, 481, 549, 775, 856, 1063
LmnI	GCTCC	3 cut(s)	409, 736, 967
Lsp1109I	GCAGC	2 cut(s)	67, 832
LweI	GCATC	4 cut(s)	499, 855, 895, 1156
MaeI	CTAG	4 cut(s)	362, 816, 839, 1246
MaeII	ACGT	2 cut(s)	626, 910
MalI	GATC	7 cut(s)	222, 311, 483, 551, 777, 858, 1065
MboI	GATC	7 cut(s)	220, 309, 481, 549, 775, 856, 1063
MhlI	GDGCHC	2 cut(s)	406, 964
MluCI	AATT	9 cut(s)	117, 425, 456, 674, 683, 705, 713, 972, 1152
MlyI	GAGTC	1 cut(s)	432
MnlI	CCTC	6 cut(s)	138, 246, 585, 872, 940, 1054
Mph1103I	ATGCAT	2 cut(s)	231, 900
MseI	TTAA	1 cut(s)	608
MslI	CAYNNNNRTG	6 cut(s)	51, 197, 243, 477, 903, 983
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	3 cut(s)	157, 735, 1189
Mva1269I	GAATGC	2 cut(s)	192, 817
MvaI	CCWGG	2 cut(s)	735, 1189
MwoI	GCNNNNNNNGC	1 cut(s)	530
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	2 cut(s)	342, 978
NdeII	GATC	7 cut(s)	220, 309, 481, 549, 775, 856, 1063
NlaIV	GGNNCC	3 cut(s)	126, 328, 732
NmeAIII	GCCGAG	1 cut(s)	69
NsiI	ATGCAT	2 cut(s)	231, 900
NspI	RCATGY	2 cut(s)	56, 797
PagI	TCATGA	2 cut(s)	429, 1162
PciI	ACATGT	2 cut(s)	52, 793
PctI	GAATGC	2 cut(s)	192, 817
PfeI	GAWTC	2 cut(s)	152, 802
PfoI	TCCNGGA	2 cut(s)	155, 733
PkrI	GCNGC	4 cut(s)	82, 539, 822, 935
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	326
PscI	ACATGT	2 cut(s)	52, 793
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	733, 1187
PspGI	CCWGG	2 cut(s)	733, 1187
PspN4I	GGNNCC	3 cut(s)	126, 328, 732
PspPI	GGNCC	2 cut(s)	326, 737
PspPPI	RGGWCCY	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	1031
RsaI	GTAC	4 cut(s)	203, 758, 1037, 1104
RsaNI	GTAC	4 cut(s)	202, 757, 1036, 1103
RseI	CAYNNNNRTG	6 cut(s)	51, 197, 243, 477, 903, 983
SaqAI	TTAA	1 cut(s)	608
SatI	GCNGC	4 cut(s)	81, 538, 821, 934
Sau3AI	GATC	7 cut(s)	220, 309, 481, 549, 775, 856, 1063
Sau96I	GGNCC	2 cut(s)	326, 737
ScaI	AGTACT	1 cut(s)	1104
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	3 cut(s)	157, 735, 1189
SduI	GDGCHC	2 cut(s)	406, 964
SfaNI	GCATC	4 cut(s)	499, 855, 895, 1156
SinI	GGWCC	2 cut(s)	326, 737
SmiMI	CAYNNNNRTG	6 cut(s)	51, 197, 243, 477, 903, 983
SpeI	ACTAGT	1 cut(s)	838
Sse9I	AATT	9 cut(s)	117, 425, 456, 674, 683, 705, 713, 972, 1152
SsiI	CCGC	3 cut(s)	369, 538, 934
SspMI	CTAG	4 cut(s)	362, 816, 839, 1246
StyD4I	CCNGG	3 cut(s)	155, 733, 1187
StyI	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
TaaI	ACNGT	2 cut(s)	865, 1027
TaiI	ACGT	2 cut(s)	629, 913
TasI	AATT	9 cut(s)	117, 425, 456, 674, 683, 705, 713, 972, 1152
TatI	WGTACW	4 cut(s)	201, 756, 1035, 1102
TauI	GCSGC	2 cut(s)	540, 936
TfiI	GAWTC	2 cut(s)	152, 802
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	4 cut(s)	406, 424, 565, 868
TseI	GCWGC	2 cut(s)	80, 820
TspDTI	ATGAA	6 cut(s)	402, 418, 426, 446, 921, 996
TspRI	CASTG	4 cut(s)	406, 424, 565, 868
VpaK11BI	GGWCC	2 cut(s)	326, 737
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	2 cut(s)	56, 797
XspI	CTAG	4 cut(s)	362, 816, 839, 1246
ZrmI	AGTACT	1 cut(s)	1104
Zsp2I	ATGCAT	2 cut(s)	231, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.