Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003202

Physical Location & Seq

Genomic Coordinates Reverse (-)

14303988 .. 14309637

Gene Structure 5650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG082000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAGTATGAGACTAACAACTGGATTTGGGATGGAGTGTATAACCACCCACATGTCTTTGGTGGTCTAATGCTCACGGCTGCCTTGCTCGGCTTGTCCACGAGCTATTTTGGTGGAATTTCGGTTCCTCAGTTGCCTTACCTATGGTCTGATTCGGGGATTTTCCAGAAGAAGAAATCTGAGAAGAAGCGCATTCGGGTGTACATGGATGGGTGCTTTGATCTCATGCACTACGGCCATGCCAATGCTCTGAGGCAAGCCAAGGCTCTGGGGGATGAGTTAGTGGTTGGGGTTGTTAGTGACGAAGAGATCATTGCCAATAAAGGTCCCCCTGTTTTATCCATGGAAGAGAGACTGGCTCTTGTTAGCGGGTTGAAGTGGGTGGATGAAGTCATAGCCAGCGCTCCTTATGAAATCACTGAACAATTCATGAACAGACTCTTCAATGAGCATAGAATTGACTATATCATACATGGTGATGATCCTTGCCTGCTTCCAGATGGAACTGATGCCTATGCCTTGGCAAAGAAAGCTGGCCGCTACAAACAGATCAAACGCACTGAAGGTGTCTCCAGCACCGATATTGTAGGGAGGATACTTTCTTCTTTAAAGGAGACAAATAATACATCTTCACATGGAGACCCTTGTGAAGAAAGTCAATCCAAGAGCGCCCAATTATCTCAATTTCTGCCAACATCCCGACGAATTGTGCAATTCTCCAATGGAAAGGCTCCTGGACCAAATGCTCGTATTGTGTACATTGATGGGGCATTTGATCTCTTCCATGCTGGACATGTTGAGATTCTGAAGAATGCTAGGCAGCTTGGAGACTTTTTACTAGTTGGCATCCACAATGATCACACTGTGAGTGAACACAGAGGCAAGCATCCAATAATGCATTTGCATGAACGTAGTCTTGGTGTGTTGGGTTGCCGCTATGTTGATGAGGTCATCATTGGTGCTCCTTGGGAAATTACCATGGATATGGTGAGAGATTATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

334

Amino Acids

37.4

Weight (kDa)

6.0

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	68 - 197	1.2e-25	Cytidylyltransferase-like
CTP_transf_like	PF01467	253 - 333	3.4e-15	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38670
fragaria_vesca	FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_6g09110
malus_domestica	MD04G1180800.v1.1 MD12G1196100.v1.1 MD13G1236200.v1.1 MD16G1241200.v1.1
prunus_persica	Prupe.1G067900_v2.0.a1 Prupe.1G067900_v2.0.a1 Prupe.6G300600_v2.0.a1
pyrus_communis	pycom04g15990 pycom13g20890 pycom16g20190
rosa_chinensis	RchiOBHm_Chr3g0459321 RchiOBHm_Chr4g0398251
rosa_laevigata	RLG00000009374 RLG00000025091
rosa_multiflora	Rmu_sc0006944.1_g000005 Rmu_ssc0000112.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343230 Rroxscaffold_6G00420270
rosa_rugosa	Rorug03G0035300 Rorug04G0007100 Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh3AG093300 Rh4AG084600 Rh4BG082000 Rh4CG092000 Rh4DG077100
rosa_wichuraiana	Rw3G008030 Rw4G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	369, 538, 934
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	2 cut(s)	235, 535
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	2 cut(s)	582, 827
AdeI	CACNNNGTG	1 cut(s)	865
AfaI	GTAC	2 cut(s)	203, 758
AfeI	AGCGCT	1 cut(s)	403
AflIII	ACRYGT	2 cut(s)	52, 793
AgsI	TTSAA	2 cut(s)	376, 445
AhlI	ACTAGT	1 cut(s)	838
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	2 cut(s)	900, 932
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	3 cut(s)	105, 533, 823
AluI	AGCT	3 cut(s)	105, 533, 823
Alw21I	GWGCWC	1 cut(s)	964
Alw26I	GTCTC	6 cut(s)	5, 346, 574, 608, 633, 822
AlwI	GGATC	1 cut(s)	476
Aor51HI	AGCGCT	1 cut(s)	403
AoxI	GGCC	2 cut(s)	235, 535
ApeKI	GCWGC	2 cut(s)	80, 820
ApoI	RAATTY	1 cut(s)	117
AspLEI	GCGC	3 cut(s)	192, 404, 671
AspS9I	GGNCC	2 cut(s)	326, 737
AsuHPI	GGTGA	2 cut(s)	488, 1000
AvaII	GGWCC	2 cut(s)	326, 737
BauI	CACGAG	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	964
BbvI	GCAGC	2 cut(s)	67, 832
BccI	CCATC	4 cut(s)	26, 203, 494, 758
BceAI	ACGGC	2 cut(s)	93, 250
BciT130I	CCWGG	1 cut(s)	735
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	6 cut(s)	5, 346, 574, 608, 633, 822
BcuI	ACTAGT	1 cut(s)	838
BfaI	CTAG	2 cut(s)	816, 839
BfoI	RGCGCY	2 cut(s)	405, 672
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	4 cut(s)	81, 538, 821, 934
BlsI	GCNGC	4 cut(s)	82, 539, 822, 935
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	2 cut(s)	326, 737
BmgT120I	GGNCC	2 cut(s)	326, 737
BmiI	GGNNCC	3 cut(s)	126, 328, 732
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	3 cut(s)	499, 855, 895
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
BpmI	CTGGAG	1 cut(s)	556
BsaI	GGTCTC	1 cut(s)	633
BsaJI	CCNNGG	5 cut(s)	261, 342, 519, 965, 978
Bse1I	ACTGG	2 cut(s)	26, 360
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	5 cut(s)	261, 342, 519, 965, 978
BseGI	GGATG	7 cut(s)	37, 214, 280, 391, 695, 846, 886
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	143, 171, 242
BseNI	ACTGG	2 cut(s)	26, 360
BseXI	GCAGC	2 cut(s)	67, 832
BshFI	GGCC	2 cut(s)	237, 537
BsiHKAI	GWGCWC	1 cut(s)	964
BslFI	GGGAC	1 cut(s)	312
BsmAI	GTCTC	6 cut(s)	5, 346, 574, 608, 633, 822
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	2 cut(s)	192, 817
BsnI	GGCC	2 cut(s)	237, 537
Bso31I	GGTCTC	1 cut(s)	633
Bsp1286I	GDGCHC	1 cut(s)	964
Bsp1407I	TGTACA	2 cut(s)	201, 756
Bsp143I	GATC	6 cut(s)	220, 309, 481, 549, 775, 856
Bsp19I	CCATGG	2 cut(s)	342, 978
BspACI	CCGC	3 cut(s)	369, 538, 934
BspANI	GGCC	2 cut(s)	237, 537
BspCNI	CTCAG	3 cut(s)	142, 172, 243
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	126, 328, 732
BspPI	GGATC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	633
BsrDI	GCAATG	1 cut(s)	312
BsrGI	TGTACA	2 cut(s)	201, 756
BsrI	ACTGG	2 cut(s)	26, 360
BssECI	CCNNGG	5 cut(s)	261, 342, 519, 965, 978
BssMI	GATC	6 cut(s)	220, 309, 481, 549, 775, 856
BssSI	CACGAG	1 cut(s)	100
BssT1I	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	1 cut(s)	865
Bst6I	CTCTTC	4 cut(s)	300, 342, 446, 785
BstAUI	TGTACA	2 cut(s)	201, 756
BstC8I	GCNNGC	5 cut(s)	258, 400, 491, 535, 884
BstDEI	CTNAG	3 cut(s)	129, 180, 251
BstDSI	CCRYGG	2 cut(s)	342, 978
BstF5I	GGATG	7 cut(s)	37, 214, 280, 391, 695, 846, 886
BstH2I	RGCGCY	2 cut(s)	405, 672
BstHHI	GCGC	3 cut(s)	192, 404, 671
BstKTI	GATC	6 cut(s)	223, 312, 484, 552, 778, 859
BstMAI	GTCTC	6 cut(s)	5, 346, 574, 608, 633, 822
BstMBI	GATC	6 cut(s)	220, 309, 481, 549, 775, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	2 cut(s)	56, 797
BstSCI	CCNGG	1 cut(s)	733
BstV1I	GCAGC	2 cut(s)	67, 832
BstXI	CCANNNNNNTGG	2 cut(s)	268, 985
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	237, 537
BtgI	CCRYGG	2 cut(s)	342, 978
BtsCI	GGATG	7 cut(s)	37, 214, 280, 391, 695, 846, 886
BtsIMutI	CAGTG	3 cut(s)	417, 558, 861
Cac8I	GCNNGC	5 cut(s)	258, 400, 491, 535, 884
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	3 cut(s)	192, 404, 671
Cfr13I	GGNCC	2 cut(s)	326, 737
Csp6I	GTAC	2 cut(s)	202, 757
CviQI	GTAC	2 cut(s)	202, 757
DdeI	CTNAG	3 cut(s)	129, 180, 251
DpnI	GATC	6 cut(s)	222, 311, 483, 551, 777, 858
DpnII	GATC	6 cut(s)	220, 309, 481, 549, 775, 856
DraI	TTTAAA	1 cut(s)	609
DraIII	CACNNNGTG	1 cut(s)	865
EaeI	YGGCCR	2 cut(s)	235, 535
Eam1104I	CTCTTC	4 cut(s)	300, 342, 446, 785
EarI	CTCTTC	4 cut(s)	300, 342, 446, 785
Eco130I	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
Eco31I	GGTCTC	1 cut(s)	633
Eco47I	GGWCC	2 cut(s)	326, 737
Eco47III	AGCGCT	1 cut(s)	403
Eco57I	CTGAAG	2 cut(s)	582, 827
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
EcoT22I	ATGCAT	1 cut(s)	900
ErhI	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
FaqI	GGGAC	1 cut(s)	312
FauI	CCCGC	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	4 cut(s)	81, 538, 821, 934
FokI	GGATG	7 cut(s)	44, 221, 287, 398, 682, 833, 873
Fsp4HI	GCNGC	4 cut(s)	81, 538, 821, 934
FspBI	CTAG	2 cut(s)	816, 839
GlaI	GCGC	3 cut(s)	191, 403, 670
GluI	GCNGC	4 cut(s)	81, 538, 821, 934
GsuI	CTGGAG	1 cut(s)	556
HaeII	RGCGCY	2 cut(s)	405, 672
HaeIII	GGCC	2 cut(s)	237, 537
HhaI	GCGC	3 cut(s)	192, 404, 671
Hin6I	GCGC	3 cut(s)	190, 402, 669
HinP1I	GCGC	3 cut(s)	190, 402, 669
HinfI	GANTC	3 cut(s)	152, 438, 802
HphI	GGTGA	2 cut(s)	488, 1000
Hpy166II	GTNNAC	4 cut(s)	99, 202, 757, 872
Hpy188I	TCNGA	4 cut(s)	151, 181, 252, 807
Hpy188III	TCNNGA	4 cut(s)	166, 430, 497, 699
Hpy8I	GTNNAC	4 cut(s)	99, 202, 757, 872
Hpy99I	CGWCG	1 cut(s)	705
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	1 cut(s)	865
HpyCH4IV	ACGT	1 cut(s)	910
HpyCH4V	TGCA	4 cut(s)	229, 712, 898, 904
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	3 cut(s)	129, 180, 251
HpySE526I	ACGT	1 cut(s)	910
HspAI	GCGC	3 cut(s)	190, 402, 669
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	6 cut(s)	220, 309, 481, 549, 775, 856
LmnI	GCTCC	3 cut(s)	409, 736, 967
Lsp1109I	GCAGC	2 cut(s)	67, 832
LweI	GCATC	3 cut(s)	499, 855, 895
MaeI	CTAG	2 cut(s)	816, 839
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	6 cut(s)	222, 311, 483, 551, 777, 858
MboI	GATC	6 cut(s)	220, 309, 481, 549, 775, 856
MhlI	GDGCHC	1 cut(s)	964
MluCI	AATT	8 cut(s)	117, 425, 456, 674, 683, 705, 713, 972
MlyI	GAGTC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	138, 246, 585, 872, 940
Mph1103I	ATGCAT	1 cut(s)	900
MseI	TTAA	1 cut(s)	608
MslI	CAYNNNNRTG	6 cut(s)	51, 197, 243, 477, 903, 983
MspR9I	CCNGG	1 cut(s)	735
Mva1269I	GAATGC	2 cut(s)	192, 817
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	1 cut(s)	530
NcoI	CCATGG	2 cut(s)	342, 978
NdeII	GATC	6 cut(s)	220, 309, 481, 549, 775, 856
NlaIV	GGNNCC	3 cut(s)	126, 328, 732
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	900
NspI	RCATGY	2 cut(s)	56, 797
PagI	TCATGA	1 cut(s)	429
PciI	ACATGT	2 cut(s)	52, 793
PctI	GAATGC	2 cut(s)	192, 817
PfeI	GAWTC	2 cut(s)	152, 802
PfoI	TCCNGGA	1 cut(s)	733
PkrI	GCNGC	4 cut(s)	82, 539, 822, 935
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	326
PscI	ACATGT	2 cut(s)	52, 793
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	3 cut(s)	126, 328, 732
PspPI	GGNCC	2 cut(s)	326, 737
PspPPI	RGGWCCY	1 cut(s)	326
RsaI	GTAC	2 cut(s)	203, 758
RsaNI	GTAC	2 cut(s)	202, 757
RseI	CAYNNNNRTG	6 cut(s)	51, 197, 243, 477, 903, 983
SaqAI	TTAA	1 cut(s)	608
SatI	GCNGC	4 cut(s)	81, 538, 821, 934
Sau3AI	GATC	6 cut(s)	220, 309, 481, 549, 775, 856
Sau96I	GGNCC	2 cut(s)	326, 737
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	1 cut(s)	964
SetI	ASST	8 cut(s)	107, 144, 328, 535, 568, 825, 913, 951
SfaNI	GCATC	3 cut(s)	499, 855, 895
SinI	GGWCC	2 cut(s)	326, 737
SmiMI	CAYNNNNRTG	6 cut(s)	51, 197, 243, 477, 903, 983
SpeI	ACTAGT	1 cut(s)	838
Sse9I	AATT	8 cut(s)	117, 425, 456, 674, 683, 705, 713, 972
SsiI	CCGC	3 cut(s)	369, 538, 934
SspMI	CTAG	2 cut(s)	816, 839
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	5 cut(s)	261, 342, 519, 965, 978
TaaI	ACNGT	1 cut(s)	865
TaiI	ACGT	1 cut(s)	913
TasI	AATT	8 cut(s)	117, 425, 456, 674, 683, 705, 713, 972
TatI	WGTACW	2 cut(s)	201, 756
TauI	GCSGC	2 cut(s)	540, 936
TfiI	GAWTC	2 cut(s)	152, 802
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	3 cut(s)	424, 565, 868
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	2 cut(s)	80, 820
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	5 cut(s)	402, 418, 426, 446, 921
TspRI	CASTG	3 cut(s)	424, 565, 868
VpaK11BI	GGWCC	2 cut(s)	326, 737
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	2 cut(s)	56, 797
XspI	CTAG	2 cut(s)	816, 839
Zsp2I	ATGCAT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.