Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003202

Physical Location & Seq

Genomic Coordinates Reverse (-)

26086396 .. 26091441

Gene Structure 5046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1241200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAATATGAAACTAACAACTGGATTTGGGATGGAATGTACAACCACCCGCATGTATTTGGCGGTCTAATGCTCACGGCCGCCTTGCTCGGCTTGTCCACGAGCTATTTTGGTGGAATTACGGTGCCCCAGTTGCCGTATTTATGGTCTGATTCAGGGATCTTTCATAAGAAGAAATGTGATAAGAAGCACATTCGGGTTTACATGGATGGTTGCTTTGATCTCATGCATTATGGCCATGCCAATGCATTGAGGCAAGCCAAGGCTTTGGGAGATGAGTTGGTGGTGGGCGTTGTTAGCGATGAGGAGATTATTGCCAATAAAGGTCCACCTGTTTTATCCATGGAAGAGAGATTGGCTCTCGTGAGTGGTTTGAAGTGGGTGGATGAAGTCATACCGAATGCTCCTTATGAAATTACTGAGCAATTCATGGGCAGACTCTTCAGTGAGCATAAGATTGACTATATCATACATGGTGATGATCCTTGCCTGCTGCCGGATGGAACCGATGCTTACGCCTTGGCGAAAAAAGCTGGCCGCTACAAGCAGATTAAACGCACTGAAGGTGTCTCCAGCACAGATATTGTAGGGAGGATACTTTCTTCTTTAAAGGATACAAATGATGGTGAAAATCAAACTGAGACATCCTTGCATAAAACCCCAGAAAATCAACCCAAGAGTGCCAGTTTATCTCAATTTCTACCAACATCCCGGCGCATTGTGCAATTCTCTAATGGAAAGGGACCTGGACCAAATGCTCGTGTTGTGTACATTGATGGGGCATTTGATCTCTTTCATGCAGGACATGTTGAGATTCTGAAGAATGCTAGGCAGCTCGGAGACTTTCTACTAGTTGGCATCCACAATGATGAGACTGCCTGTGAACACAGAGCGAAGTATCCAATTATGCATTTACACGAACGTAGTCTTAGTGTATTGGGTTGCCGTTATGTTGATGAAGTCATCATTGGTGCTCCCTGGGAAGTTACCATGGACATGATAACAACTTTCAACATTTCATTGGTTGTGCATGGGACAGTTTCCGAGTACAACTCCTCGTTAACTGGTGAAAGCAATCCTTATTCTGTTCCCAAGAGCATGGGGATTTTCAAATTGCTTGAAAGCCCTAAAAGTATAACAACAACATCAGTATCCCAGAGGATAATTGCAAATCATGATGCTTACTTGAAACGCAATGCCAAAAAGAAGGAGAGCGAAAAGAAATACTATGCACAGAAGACATATGTCTCGGGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

420

Amino Acids

46.77

Weight (kDa)

6.39

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	68 - 197	3.9e-26	Cytidylyltransferase-like
CTP_transf_like	PF01467	257 - 346	1.9e-16	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38670
fragaria_vesca	FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_6g09110
malus_domestica	MD04G1180800.v1.1 MD12G1196100.v1.1 MD13G1236200.v1.1 MD16G1241200.v1.1
prunus_persica	Prupe.1G067900_v2.0.a1 Prupe.1G067900_v2.0.a1 Prupe.6G300600_v2.0.a1
pyrus_communis	pycom04g15990 pycom13g20890 pycom16g20190
rosa_chinensis	RchiOBHm_Chr3g0459321 RchiOBHm_Chr4g0398251
rosa_laevigata	RLG00000009374 RLG00000025091
rosa_multiflora	Rmu_sc0006944.1_g000005 Rmu_ssc0000112.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343230 Rroxscaffold_6G00420270
rosa_rugosa	Rorug03G0035300 Rorug04G0007100 Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh3AG093300 Rh4AG084600 Rh4BG082000 Rh4CG092000 Rh4DG077100
rosa_wichuraiana	Rw3G008030 Rw4G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AciI	CCGC	4 cut(s)	50, 63, 81, 538
AclWI	GGATC	2 cut(s)	167, 476
AcoI	YGGCCR	3 cut(s)	78, 235, 535
AcuI	CTGAAG	3 cut(s)	427, 582, 839
AfaI	GTAC	3 cut(s)	41, 770, 1049
AfiI	CCNNNNNNNGG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	805
AgsI	TTSAA	5 cut(s)	376, 1012, 1111, 1121, 1189
AhlI	ACTAGT	1 cut(s)	850
AjnI	CCWGG	2 cut(s)	745, 977
AjuI	GAANNNNNNNTTGG	2 cut(s)	951, 983
AluBI	AGCT	3 cut(s)	105, 533, 835
AluI	AGCT	3 cut(s)	105, 533, 835
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	5 cut(s)	574, 635, 834, 866, 1252
AlwI	GGATC	2 cut(s)	167, 476
Ama87I	CYCGRG	1 cut(s)	1249
AoxI	GGCC	3 cut(s)	78, 235, 535
ApeKI	GCWGC	2 cut(s)	493, 832
AspLEI	GCGC	1 cut(s)	717
AspS9I	GGNCC	3 cut(s)	326, 743, 749
AsuC2I	CCSGG	1 cut(s)	712
AsuHPI	GGTGA	3 cut(s)	488, 638, 1079
AvaI	CYCGRG	1 cut(s)	1249
AvaII	GGWCC	3 cut(s)	326, 743, 749
BaeGI	GKGCMC	1 cut(s)	129
BaeI	ACNNNNGTAYC	2 cut(s)	1134, 1167
BalI	TGGCCA	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	124
BauI	CACGAG	3 cut(s)	100, 362, 759
BbsI	GAAGAC	1 cut(s)	1244
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	2 cut(s)	480, 844
BccI	CCATC	5 cut(s)	26, 203, 494, 617, 770
BceAI	ACGGC	3 cut(s)	93, 121, 930
BciT130I	CCWGG	2 cut(s)	747, 979
BciVI	GTATCC	4 cut(s)	588, 607, 909, 1162
BcnI	CCSGG	1 cut(s)	712
BcoDI	GTCTC	5 cut(s)	574, 635, 834, 866, 1252
BcuI	ACTAGT	1 cut(s)	850
BfaI	CTAG	2 cut(s)	828, 851
BfuI	GTATCC	4 cut(s)	588, 607, 909, 1162
BisI	GCNGC	4 cut(s)	81, 494, 538, 833
BlsI	GCNGC	4 cut(s)	82, 495, 539, 834
Bme1390I	CCNGG	3 cut(s)	712, 747, 979
Bme18I	GGWCC	3 cut(s)	326, 743, 749
BmeT110I	CYCGRG	1 cut(s)	1249
BmgT120I	GGNCC	3 cut(s)	326, 743, 749
BmiI	GGNNCC	3 cut(s)	126, 505, 744
BmrFI	CCNGG	3 cut(s)	712, 747, 979
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	3 cut(s)	499, 867, 1168
BmuI	ACTGGG	1 cut(s)	124
BoxI	GACNNNNGTC	1 cut(s)	1244
BpiI	GAAGAC	1 cut(s)	1244
BplI	GAGNNNNNCTC	4 cut(s)	343, 375, 1037, 1069
BpmI	CTGGAG	1 cut(s)	556
BpuMI	CCSGG	1 cut(s)	712
BsaJI	CCNNGG	6 cut(s)	261, 342, 519, 977, 978, 990
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	4 cut(s)	26, 130, 684, 1069
Bse3DI	GCAATG	1 cut(s)	1201
BseBI	CCWGG	2 cut(s)	747, 979
BseDI	CCNNGG	6 cut(s)	261, 342, 519, 977, 978, 990
BseGI	GGATG	7 cut(s)	37, 214, 391, 505, 644, 707, 858
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMI	GCAATG	1 cut(s)	1201
BseMII	CTCAG	2 cut(s)	411, 630
BseNI	ACTGG	4 cut(s)	26, 130, 684, 1069
BseRI	GAGGAG	2 cut(s)	320, 1045
BseSI	GKGCMC	1 cut(s)	129
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	480, 844
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	80, 237, 537
BshNI	GGYRCC	1 cut(s)	124
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	976
BsiHKCI	CYCGRG	1 cut(s)	1249
BsiSI	CCGG	2 cut(s)	497, 712
BslFI	GGGAC	2 cut(s)	756, 1048
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmAI	GTCTC	5 cut(s)	574, 635, 834, 866, 1252
BsmFI	GGGAC	2 cut(s)	756, 1048
BsmI	GAATGC	2 cut(s)	406, 829
BsnI	GGCC	3 cut(s)	80, 237, 537
BsoBI	CYCGRG	1 cut(s)	1249
Bsp1286I	GDGCHC	2 cut(s)	129, 976
Bsp1407I	TGTACA	2 cut(s)	39, 768
Bsp143I	GATC	4 cut(s)	159, 220, 481, 787
Bsp19I	CCATGG	2 cut(s)	342, 990
BspACI	CCGC	4 cut(s)	50, 63, 81, 538
BspANI	GGCC	3 cut(s)	80, 237, 537
BspCNI	CTCAG	2 cut(s)	412, 631
BspHI	TCATGA	1 cut(s)	1174
BspLI	GGNNCC	3 cut(s)	126, 505, 744
BspPI	GGATC	2 cut(s)	167, 476
BspT107I	GGYRCC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	1201
BsrGI	TGTACA	2 cut(s)	39, 768
BsrI	ACTGG	4 cut(s)	26, 130, 684, 1069
BssECI	CCNNGG	6 cut(s)	261, 342, 519, 977, 978, 990
BssMI	GATC	4 cut(s)	159, 220, 481, 787
BssSI	CACGAG	3 cut(s)	100, 362, 759
BssT1I	CCWWGG	4 cut(s)	261, 342, 519, 990
Bst2BI	CACGAG	3 cut(s)	100, 362, 759
Bst2UI	CCWGG	2 cut(s)	747, 979
Bst4CI	ACNGT	2 cut(s)	124, 1039
Bst6I	CTCTTC	2 cut(s)	342, 446
BstAUI	TGTACA	2 cut(s)	39, 768
BstC8I	GCNNGC	3 cut(s)	258, 491, 535
BstDEI	CTNAG	3 cut(s)	420, 639, 929
BstDSI	CCRYGG	2 cut(s)	342, 990
BstF5I	GGATG	7 cut(s)	37, 214, 391, 505, 644, 707, 858
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	4 cut(s)	162, 223, 484, 790
BstMAI	GTCTC	5 cut(s)	574, 635, 834, 866, 1252
BstMBI	GATC	4 cut(s)	159, 220, 481, 787
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 297, 530, 721
BstNI	CCWGG	2 cut(s)	747, 979
BstNSI	RCATGY	2 cut(s)	56, 809
BstPAI	GACNNNNGTC	1 cut(s)	1244
BstSCI	CCNGG	3 cut(s)	710, 745, 977
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	480, 844
BstV2I	GAAGAC	1 cut(s)	1244
BstX2I	RGATCY	1 cut(s)	159
BstXI	CCANNNNNNTGG	2 cut(s)	268, 1099
BstYI	RGATCY	1 cut(s)	159
BstZI	CGGCCG	1 cut(s)	78
BsuI	GTATCC	4 cut(s)	588, 607, 909, 1162
BsuRI	GGCC	3 cut(s)	80, 237, 537
BtgI	CCRYGG	2 cut(s)	342, 990
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	7 cut(s)	37, 214, 391, 505, 644, 707, 858
BtsIMutI	CAGTG	2 cut(s)	451, 558
Cac8I	GCNNGC	3 cut(s)	258, 491, 535
CciI	TCATGA	1 cut(s)	1174
CfoI	GCGC	1 cut(s)	717
Cfr13I	GGNCC	3 cut(s)	326, 743, 749
Csp6I	GTAC	3 cut(s)	40, 769, 1048
CviQI	GTAC	3 cut(s)	40, 769, 1048
DdeI	CTNAG	3 cut(s)	420, 639, 929
DpnI	GATC	4 cut(s)	161, 222, 483, 789
DpnII	GATC	4 cut(s)	159, 220, 481, 787
DraI	TTTAAA	1 cut(s)	609
EaeI	YGGCCR	3 cut(s)	78, 235, 535
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	342, 446
EarI	CTCTTC	2 cut(s)	342, 446
EclXI	CGGCCG	1 cut(s)	78
Eco130I	CCWWGG	4 cut(s)	261, 342, 519, 990
Eco47I	GGWCC	3 cut(s)	326, 743, 749
Eco52I	CGGCCG	1 cut(s)	78
Eco57I	CTGAAG	3 cut(s)	427, 582, 839
Eco88I	CYCGRG	1 cut(s)	1249
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	745, 977
EcoT14I	CCWWGG	4 cut(s)	261, 342, 519, 990
EcoT22I	ATGCAT	3 cut(s)	231, 250, 912
ErhI	CCWWGG	4 cut(s)	261, 342, 519, 990
FalI	AAGNNNNNCTT	2 cut(s)	1063, 1095
FaqI	GGGAC	2 cut(s)	756, 1048
FauI	CCCGC	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	1243
Fnu4HI	GCNGC	4 cut(s)	81, 494, 538, 833
FokI	GGATG	7 cut(s)	44, 221, 398, 512, 631, 694, 845
Fsp4HI	GCNGC	4 cut(s)	81, 494, 538, 833
FspBI	CTAG	2 cut(s)	828, 851
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	4 cut(s)	81, 494, 538, 833
GsuI	CTGGAG	1 cut(s)	556
HaeIII	GGCC	3 cut(s)	80, 237, 537
HapII	CCGG	2 cut(s)	497, 712
HhaI	GCGC	1 cut(s)	717
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HincII	GTYRAC	1 cut(s)	1062
HindII	GTYRAC	1 cut(s)	1062
HinfI	GANTC	3 cut(s)	152, 438, 814
HpaI	GTTAAC	1 cut(s)	1062
HpaII	CCGG	2 cut(s)	497, 712
HphI	GGTGA	3 cut(s)	488, 638, 1079
Hpy166II	GTNNAC	6 cut(s)	99, 202, 329, 769, 884, 1062
Hpy188I	TCNGA	4 cut(s)	151, 819, 839, 1045
Hpy188III	TCNNGA	3 cut(s)	364, 1175, 1251
Hpy8I	GTNNAC	6 cut(s)	99, 202, 329, 769, 884, 1062
HpyAV	CCTTC	2 cut(s)	557, 1201
HpyCH4III	ACNGT	2 cut(s)	124, 1039
HpyCH4IV	ACGT	1 cut(s)	922
HpyCH4V	TGCA	9 cut(s)	229, 248, 652, 724, 800, 910, 1030, 1169, 1232
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 297, 530, 721
HpyF3I	CTNAG	3 cut(s)	420, 639, 929
HpySE526I	ACGT	1 cut(s)	922
HspAI	GCGC	1 cut(s)	715
KspAI	GTTAAC	1 cut(s)	1062
Kzo9I	GATC	4 cut(s)	159, 220, 481, 787
LmnI	GCTCC	2 cut(s)	409, 979
Lsp1109I	GCAGC	2 cut(s)	480, 844
LweI	GCATC	3 cut(s)	499, 867, 1168
MaeI	CTAG	2 cut(s)	828, 851
MaeII	ACGT	1 cut(s)	922
MaeIII	GTNAC	1 cut(s)	985
MalI	GATC	4 cut(s)	161, 222, 483, 789
MboI	GATC	4 cut(s)	159, 220, 481, 787
MboII	GAAGA	6 cut(s)	184, 359, 433, 594, 832, 1249
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	129, 976
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	8 cut(s)	117, 414, 425, 695, 725, 903, 1112, 1164
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	246, 298, 585, 1066, 1152
Mox20I	TGGCCA	1 cut(s)	237
Mph1103I	ATGCAT	3 cut(s)	231, 250, 912
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	3 cut(s)	552, 608, 1061
MslI	CAYNNNNRTG	5 cut(s)	51, 243, 477, 867, 995
Msp20I	TGGCCA	1 cut(s)	237
MspI	CCGG	2 cut(s)	497, 712
MspR9I	CCNGG	3 cut(s)	712, 747, 979
Mva1269I	GAATGC	2 cut(s)	406, 829
MvaI	CCWGG	2 cut(s)	747, 979
MwoI	GCNNNNNNNGC	4 cut(s)	133, 297, 530, 721
NciI	CCSGG	1 cut(s)	712
NcoI	CCATGG	2 cut(s)	342, 990
NdeI	CATATG	1 cut(s)	1243
NdeII	GATC	4 cut(s)	159, 220, 481, 787
NlaIV	GGNNCC	3 cut(s)	126, 505, 744
NmeAIII	GCCGAG	1 cut(s)	69
NsiI	ATGCAT	3 cut(s)	231, 250, 912
NspI	RCATGY	2 cut(s)	56, 809
PagI	TCATGA	1 cut(s)	1174
PasI	CCCWGGG	1 cut(s)	978
PciI	ACATGT	1 cut(s)	805
PctI	GAATGC	2 cut(s)	406, 829
PfeI	GAWTC	2 cut(s)	152, 814
PkrI	GCNGC	4 cut(s)	82, 495, 539, 834
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	743
PscI	ACATGT	1 cut(s)	805
PshAI	GACNNNNGTC	1 cut(s)	1244
Psp5II	RGGWCCY	1 cut(s)	743
Psp6I	CCWGG	2 cut(s)	745, 977
PspGI	CCWGG	2 cut(s)	745, 977
PspN4I	GGNNCC	3 cut(s)	126, 505, 744
PspPI	GGNCC	3 cut(s)	326, 743, 749
PspPPI	RGGWCCY	1 cut(s)	743
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	3 cut(s)	41, 770, 1049
RsaNI	GTAC	3 cut(s)	40, 769, 1048
RseI	CAYNNNNRTG	5 cut(s)	51, 243, 477, 867, 995
SaqAI	TTAA	3 cut(s)	552, 608, 1061
SatI	GCNGC	4 cut(s)	81, 494, 538, 833
Sau3AI	GATC	4 cut(s)	159, 220, 481, 787
Sau96I	GGNCC	3 cut(s)	326, 743, 749
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	3 cut(s)	712, 747, 979
SduI	GDGCHC	2 cut(s)	129, 976
SetI	ASST	8 cut(s)	107, 328, 334, 535, 568, 748, 837, 925
SfaNI	GCATC	3 cut(s)	499, 867, 1168
SinI	GGWCC	3 cut(s)	326, 743, 749
SmiMI	CAYNNNNRTG	5 cut(s)	51, 243, 477, 867, 995
SpeI	ACTAGT	1 cut(s)	850
Sse9I	AATT	8 cut(s)	117, 414, 425, 695, 725, 903, 1112, 1164
SsiI	CCGC	4 cut(s)	50, 63, 81, 538
SspMI	CTAG	2 cut(s)	828, 851
StyD4I	CCNGG	3 cut(s)	710, 745, 977
StyI	CCWWGG	4 cut(s)	261, 342, 519, 990
TaaI	ACNGT	2 cut(s)	124, 1039
TaiI	ACGT	1 cut(s)	925
TasI	AATT	8 cut(s)	117, 414, 425, 695, 725, 903, 1112, 1164
TatI	WGTACW	3 cut(s)	39, 768, 1047
TauI	GCSGC	2 cut(s)	83, 540
TfiI	GAWTC	2 cut(s)	152, 814
Tru1I	TTAA	3 cut(s)	552, 608, 1061
Tru9I	TTAA	3 cut(s)	552, 608, 1061
TscAI	CASTG	2 cut(s)	451, 565
TseI	GCWGC	2 cut(s)	493, 832
TspDTI	ATGAA	8 cut(s)	24, 155, 402, 418, 426, 785, 972, 1008
TspRI	CASTG	2 cut(s)	451, 565
VpaK11BI	GGWCC	3 cut(s)	326, 743, 749
XceI	RCATGY	2 cut(s)	56, 809
XspI	CTAG	2 cut(s)	828, 851
Zsp2I	ATGCAT	3 cut(s)	231, 250, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.