Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003202

Physical Location & Seq

Genomic Coordinates Forward (+)

51814808 .. 51830252

Gene Structure 15445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3036 bp

ATGGGGAGTAAAAGCAAGAGGAAGAAGCATTTGCCGGAAACGAGCGACGACGATTCACCGTCGTCGTCTCCTTCAAGCTCCGACGAATCCGACCGGTCCTCGAAACGGCGTCGTCGCCACCGTCACCGAAGCGACGACGGCTCCAGAAGAGAGAAAGAAAGGAGAAGGGAGAGGAGAGAGAAACGGCGAAGTAAGAGAGAGGCGAGGCGGAGCAAATCGAAGACTAAGAAGAAGAAGAAGAGGGACTATGACTCCGGTTCCGGGTCTTCGAGTGGTGGCGGTGATTCTGAGCCGGAGAGGAGCCGGGTTGAGCCGCGAGAGGTTTTGCGAGACTTGTTCAGTGAATTTCCTAATGTTGGCGACGATTTGAAGCAGCTTTTGCAAATGATTGATAGTGGGCAAGCAGTTGATATAAAGGGAATATCTGAAAGATCTTTGATTAAGCATCTAAAGAAGTTATTCCTTTCATTAGAACTCAAGGAAAGTGATGGAGTTTTTGTACTGCCTTCAAATGTTCGTCCCACCTTGGAGGTTGTTGGGGTCATGATTCCAGTGTCTGTAGATCTTAAATCTTCATTAAATGAGATGCATTCAGAACAACAGGATGAGGAATACAAACAAGTGGTTGGTGATGATAATATGGCATCGCCATGTCCGGAGGATAATGTTGCTGGTCCTAACAGAAGGATAATTGGCCCTGCAATGCCATCGGCCGAGCTACTTGCTGCTGCAGCCAAACTGACAGAGGCACAGGCCGAGCTCAGGGAAGTGGAGTTGGAAGAGGATGCTGGAATGTTTATAGGGCCTCCACCACCTGCTGTTGTTGCTGAAGTTGAATCAGCTAATGAAGCTGAACGGTTTGAAGAGGTCACGAGGATCATAGATGCTGAGGAGAATAGTCCATACGATGTTCTAGGAGCAAACCAAAATATGGCTCCTGAGAACATAAAGAAAAGGTACTGGAAGATGTCTCTTTTGGTGCACCCTGATAAATGCTCACATCCTCAAGCTCAACAAGCATTTGTCAAGTTGAACAAAGCTTTTAAAGATTTACAAGATCCAGAAAAGCGGAAAGTGCTAGATGAGAAGATTAAACTCAAGGAGGAGCATGAGAAATTTAAGGTGGAGTTGCGAGCAATGCGGGAGGCTGCACAATGGAGAAAGATACAAGGAATATCCATGGAGGGTGATGATGAGCTATTGGCAGACATGGATGTTAAAGTGGCACCACAAAGAGATGAGTGGATGACAACGCTTCCTCCTGAGAGGAGACCTGGTGGTATGCCTACGCAGTCAACAAAGTTTAGCAGCACCGTTAAGGAAGGACGTGGTGATACTAGTGCATGGACTGACACCCCTTCTGACAGAGCCCAGAAAGCTAAGATGGATTACTTAGAAGCATATAATGAGGCTGCATCACTTGCTTCAAATGAGGAGAAGAAAATGAATAGTTCAGATGCAGATTTGGTGGACAGATACAACAAAGAAAAACGATCAAAATCATTGGTACAAAAACACCAAGAGACTGCAAGCCGCCCAAAGAGAAAATCCAAGCAACCGTTGGAGAAGGAGAAGAAGGAAGAATGGGTGGGAAAACATCCTTGGAAGCCTTGGGACCGTGAAAAGGATTTGACAGGCGGTAGGCAAAGTAAGAAGAAGCAACGCTTGCAAGAACCTTTGGGTTGTTTCACACACCACAAAAGAGAAGAGAGAAGAGGAGGCACAAAGCTTCTATTACACAAAGGTTTTGTGTCTCCTCTGAGTAAGTTATTTGATAAAGTAGGCAACATGGAGTATGAGTCTAACAACTGGATTTGGGATGGAGTGTATAACCACCCACATGTGTTTGGTGGTCTAATGCTCACGGCTGCCTTGCTCGGCTTGTCCACGAGCTATTTTGGTGGAATTTCGGTTCCTCAGTTGCCTTACCTATGGTCTGATTCGGGGATTTTCCATAAGAAGAAATCTGAGAAGAAGCGCATTCGGGTGTACATGGATGGGTGCTTTGATCTCATGCACTACGGCCATGCCAATGCTCTGAGGCAAGCCAAGGCTCTGGGGGATGAGTTAGTGGTTGGGGTTGTTAGCGACGAAGAGATCATTGCCAATAAAGGTCCCCCCGTTTTATCCATGGAAGAGAGACTGGCTCTCGTTAGCGGGTTGAAGTGGGTGGATGAAGTCATAGCCAGCGCTCCTTATGAAATCACTGAACAATTCATGAACAGACTCTTCAATGAGTATAAAATTGACTATATCATACATGGTGATGATCCTTGCCTGCTTCCAGATGGAACTGATGCCTATGCCTTGGCAAAGAAAGCTGGCCGCTACAAACAGATCAAACGCACTGAAGGTGTCTCCAGCACCGATATTGTAGGGAGGATACTTTCTTCTTTAAAGGAGACAAATAATACATCTTCACATGGAGACCCTTGCGAAGAAAGTCAATCCAAGAGTGCCCAATTATCTCAATTTCTGCCAACATCCCGACGAATTGTGCAATTCTCCAATGGAAAGGCTCCTGGACCAAATGCTCGTATTGTGTACATTGATGGGGCATTTGATCTCTTCCACGCTGGACATGTTGAGATTCTGAAGAATGCTAGGCAGCTTGGAGACTTTTTACTAGTTGGCATCCACAATGATCACACTGTGAGTGAACACAGAGGCAGGCATCCAATAATGCATTTACATGAACGTAGTCTTGGTGTGTTGGGTTGCCGTTATGTTGATGAAGTCATCATTGGTGCTCCTTGGGAAATTACCATGGATATGATAACAACTTTCAACATTTCATTGGTAGTGCGTGGGACAGTTTCTGAGTACAACTCCTCGTTTACTGGTGAAAGTGATCCTTATTCTGTTCCCAAGAGCATGGGGATTTTCCAAGTACTTGAAAGCCCAAAAGATATAACAACAACATCAGTATCTCAGAGGATAATTGCAAATCATGATGCCTTCTTGAAACGCAACGCCAGGAAAACAGCAAGTGAAAAGAAATACTATGAACAGAAGAAATATGTTTCAGGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

1012

Amino Acids

114.28

Weight (kDa)

8.64

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	301 - 361	8.7e-17	DnaJ domain
DUF3752	PF12572	420 - 555	5.6e-24	Protein of unknown function (DUF3752)
CTP_transf_like	PF01467	664 - 793	4.4e-25	Cytidylyltransferase-like
CTP_transf_like	PF01467	849 - 938	1.8e-16	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38670
fragaria_vesca	FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_6g09110
malus_domestica	MD04G1180800.v1.1 MD12G1196100.v1.1 MD13G1236200.v1.1 MD16G1241200.v1.1
prunus_persica	Prupe.1G067900_v2.0.a1 Prupe.1G067900_v2.0.a1 Prupe.6G300600_v2.0.a1
pyrus_communis	pycom04g15990 pycom13g20890 pycom16g20190
rosa_chinensis	RchiOBHm_Chr3g0459321 RchiOBHm_Chr4g0398251
rosa_laevigata	RLG00000009374 RLG00000025091
rosa_multiflora	Rmu_sc0006944.1_g000005 Rmu_ssc0000112.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343230 Rroxscaffold_6G00420270
rosa_rugosa	Rorug03G0035300 Rorug04G0007100 Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh3AG093300 Rh4AG084600 Rh4BG082000 Rh4CG092000 Rh4DG077100
rosa_wichuraiana	Rw3G008030 Rw4G007030

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	823
Acc36I	ACCTGC	1 cut(s)	823
AccB1I	GGYRCC	1 cut(s)	1225
AccB7I	CCANNNNNTGG	1 cut(s)	931
AccII	CGCG	1 cut(s)	316
AccIII	TCCGGA	1 cut(s)	655
AciI	CCGC	9 cut(s)	208, 279, 314, 1069, 1141, 1534, 1638, 2157, 2326
AclWI	GGATC	4 cut(s)	884, 1052, 2264, 2846
AcoI	YGGCCR	3 cut(s)	711, 2023, 2323
AcsI	RAATTY	3 cut(s)	344, 1115, 1905
AcuI	CTGAAG	3 cut(s)	849, 2370, 2615
AcyI	GRCGYC	1 cut(s)	109
AdeI	CACNNNGTG	1 cut(s)	2653
AfaI	GTAC	7 cut(s)	501, 959, 1509, 1991, 2546, 2825, 2892
AfeI	AGCGCT	1 cut(s)	2191
AfiI	CCNNNNNNNGG	6 cut(s)	105, 261, 356, 762, 931, 1624
AflIII	ACRYGT	2 cut(s)	1840, 2581
AgeI	ACCGGT	1 cut(s)	93
AhlI	ACTAGT	2 cut(s)	1337, 2626
AjiI	CACGTC	1 cut(s)	1328
AjnI	CCWGG	3 cut(s)	1273, 2521, 2975
AjuI	GAANNNNNNNTTGG	6 cut(s)	1585, 1617, 2688, 2720, 2727, 2759
AloI	GAACNNNNNNTCC	2 cut(s)	1896, 1928
Alw21I	GWGCWC	3 cut(s)	762, 984, 2752
Alw44I	GTGCAC	1 cut(s)	980
AlwI	GGATC	4 cut(s)	884, 1052, 2264, 2846
AlwNI	CAGNNNCTG	2 cut(s)	557, 2819
Aor13HI	TCCGGA	1 cut(s)	655
Aor51HI	AGCGCT	1 cut(s)	2191
AoxI	GGCC	6 cut(s)	694, 711, 753, 803, 2023, 2323
ApaLI	GTGCAC	1 cut(s)	980
ApeKI	GCWGC	9 cut(s)	373, 725, 728, 731, 1148, 1308, 1412, 1868, 2608
ApoI	RAATTY	3 cut(s)	344, 1115, 1905
AsiGI	ACCGGT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	1980, 2192
AspS9I	GGNCC	7 cut(s)	96, 674, 695, 803, 1615, 2114, 2525
AsuC2I	CCSGG	2 cut(s)	262, 305
AsuHPI	GGTGA	8 cut(s)	48, 116, 293, 641, 1199, 1343, 2276, 2855
AvaII	GGWCC	5 cut(s)	96, 674, 1615, 2114, 2525
BaeGI	GKGCMC	2 cut(s)	984, 2461
BaeI	ACNNNNGTAYC	2 cut(s)	2910, 2943
BanI	GGYRCC	1 cut(s)	1225
BanII	GRGCYC	2 cut(s)	762, 1372
BauI	CACGAG	2 cut(s)	871, 1888
BbsI	GAAGAC	2 cut(s)	227, 258
Bbv12I	GWGCWC	3 cut(s)	762, 984, 2752
BbvCI	CCTCAGC	1 cut(s)	888
BbvI	GCAGC	9 cut(s)	385, 712, 715, 743, 1135, 1320, 1399, 1855, 2620
BccI	CCATC	7 cut(s)	482, 715, 1378, 1814, 1991, 2282, 2546
BceAI	ACGGC	6 cut(s)	122, 154, 200, 1881, 2038, 2706
BcgI	CGANNNNNNTGC	4 cut(s)	690, 704, 724, 738
BciT130I	CCWGG	3 cut(s)	1275, 2523, 2977
BciVI	GTATCC	1 cut(s)	2376
BclI	TGATCA	1 cut(s)	2644
BcnI	CCSGG	2 cut(s)	262, 305
BcuI	ACTAGT	2 cut(s)	1337, 2626
BfaI	CTAG	6 cut(s)	914, 1079, 1338, 2604, 2627, 3034
BfmI	CTRYAG	2 cut(s)	558, 729
BfoI	RGCGCY	1 cut(s)	2193
BfuAI	ACCTGC	1 cut(s)	823
BfuI	GTATCC	1 cut(s)	2376
BglII	AGATCT	2 cut(s)	431, 562
BmcAI	AGTACT	1 cut(s)	2892
Bme1390I	CCNGG	5 cut(s)	262, 305, 1275, 2523, 2977
Bme18I	GGWCC	5 cut(s)	96, 674, 1615, 2114, 2525
BmgBI	CACGTC	1 cut(s)	1328
BmgT120I	GGNCC	7 cut(s)	96, 674, 695, 803, 1615, 2114, 2525
BmiI	GGNNCC	9 cut(s)	142, 259, 302, 936, 1227, 1616, 1914, 2116, 2520
BmrFI	CCNGG	5 cut(s)	262, 305, 1275, 2523, 2977
BpiI	GAAGAC	2 cut(s)	227, 258
BplI	GAGNNNNNCTC	4 cut(s)	2131, 2163, 2813, 2845
BpmI	CTGGAG	2 cut(s)	127, 2344
Bpu10I	CCTNAGC	2 cut(s)	761, 888
BpuEI	CTTGAG	3 cut(s)	461, 990, 1082
BpuMI	CCSGG	2 cut(s)	262, 305
BsaBI	GATNNNNATC	1 cut(s)	1498
BsaHI	GRCGYC	1 cut(s)	109
BsaI	GGTCTC	2 cut(s)	1264, 2421
BsaJI	CCNNGG	9 cut(s)	525, 1179, 1601, 1610, 2049, 2130, 2307, 2753, 2766
BsaWI	WCCGGW	3 cut(s)	93, 254, 655
Bsc4I	CCNNNNNNNGG	6 cut(s)	105, 261, 356, 762, 931, 1624
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	5 cut(s)	551, 965, 1814, 2148, 2845
Bse3DI	GCAATG	3 cut(s)	708, 1143, 2100
Bse8I	GATNNNNATC	1 cut(s)	1498
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	3 cut(s)	1275, 2523, 2977
BseDI	CCNNGG	9 cut(s)	525, 1179, 1601, 1610, 2049, 2130, 2307, 2753, 2766
BseJI	GATNNNNATC	1 cut(s)	1498
BseLI	CCNNNNNNNGG	6 cut(s)	105, 261, 356, 762, 931, 1624
BseMI	GCAATG	3 cut(s)	708, 1143, 2100
BseNI	ACTGG	5 cut(s)	551, 965, 1814, 2148, 2845
BseRI	GAGGAG	9 cut(s)	187, 313, 905, 1118, 1282, 1448, 1731, 1746, 2821
BseSI	GKGCMC	2 cut(s)	984, 2461
BseX3I	CGGCCG	1 cut(s)	711
BseXI	GCAGC	9 cut(s)	385, 712, 715, 743, 1135, 1320, 1399, 1855, 2620
BsgI	GTGCAG	1 cut(s)	1134
Bsh1236I	CGCG	1 cut(s)	316
Bsh1285I	CGRYCG	2 cut(s)	94, 714
BshFI	GGCC	6 cut(s)	696, 713, 755, 805, 2025, 2325
BshNI	GGYRCC	1 cut(s)	1225
BshTI	ACCGGT	1 cut(s)	93
BsiEI	CGRYCG	2 cut(s)	94, 714
BsiHKAI	GWGCWC	3 cut(s)	762, 984, 2752
BsiSI	CCGG	7 cut(s)	35, 94, 255, 261, 293, 304, 656
BslFI	GGGAC	5 cut(s)	257, 504, 1628, 2100, 2824
BslI	CCNNNNNNNGG	6 cut(s)	105, 261, 356, 762, 931, 1624
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	5 cut(s)	257, 504, 1628, 2100, 2824
BsmI	GAATGC	3 cut(s)	589, 1980, 2605
BsnI	GGCC	6 cut(s)	696, 713, 755, 805, 2025, 2325
Bso31I	GGTCTC	2 cut(s)	1264, 2421
Bsp1286I	GDGCHC	5 cut(s)	762, 984, 1372, 2461, 2752
Bsp13I	TCCGGA	1 cut(s)	655
Bsp1407I	TGTACA	2 cut(s)	1989, 2544
Bsp19I	CCATGG	3 cut(s)	1179, 2130, 2766
BspACI	CCGC	9 cut(s)	208, 279, 314, 1069, 1141, 1534, 1638, 2157, 2326
BspANI	GGCC	6 cut(s)	696, 713, 755, 805, 2025, 2325
BspEI	TCCGGA	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	3 cut(s)	543, 2217, 2950
BspLI	GGNNCC	9 cut(s)	142, 259, 302, 936, 1227, 1616, 1914, 2116, 2520
BspMAI	CTGCAG	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	4 cut(s)	884, 1052, 2264, 2846
BspT107I	GGYRCC	1 cut(s)	1225
BspTNI	GGTCTC	2 cut(s)	1264, 2421
BsrDI	GCAATG	3 cut(s)	708, 1143, 2100
BsrFI	RCCGGY	1 cut(s)	93
BsrGI	TGTACA	2 cut(s)	1989, 2544
BsrI	ACTGG	5 cut(s)	551, 965, 1814, 2148, 2845
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	9 cut(s)	525, 1179, 1601, 1610, 2049, 2130, 2307, 2753, 2766
BssNI	GRCGYC	1 cut(s)	109
BssSI	CACGAG	2 cut(s)	871, 1888
BssT1I	CCWWGG	9 cut(s)	525, 1179, 1601, 1610, 2049, 2130, 2307, 2753, 2766
Bst2BI	CACGAG	2 cut(s)	871, 1888
Bst2UI	CCWGG	3 cut(s)	1275, 2523, 2977
Bst4CI	ACNGT	8 cut(s)	60, 122, 858, 1315, 1560, 1619, 2653, 2815
BstACI	GRCGYC	1 cut(s)	109
BstAPI	GCANNNNNTGC	3 cut(s)	379, 1421, 1666
BstAUI	TGTACA	2 cut(s)	1989, 2544
BstC8I	GCNNGC	9 cut(s)	402, 1134, 1531, 1667, 2046, 2188, 2279, 2323, 2672
BstDSI	CCRYGG	3 cut(s)	1179, 2130, 2766
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	2193
BstHHI	GCGC	2 cut(s)	1980, 2192
BstMCI	CGRYCG	2 cut(s)	94, 714
BstNI	CCWGG	3 cut(s)	1275, 2523, 2977
BstNSI	RCATGY	2 cut(s)	1844, 2585
BstSCI	CCNGG	5 cut(s)	260, 303, 1273, 2521, 2975
BstSFI	CTRYAG	2 cut(s)	558, 729
BstSLI	GKGCMC	2 cut(s)	984, 2461
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	9 cut(s)	385, 712, 715, 743, 1135, 1320, 1399, 1855, 2620
BstV2I	GAAGAC	2 cut(s)	227, 258
BstX2I	RGATCY	3 cut(s)	431, 562, 1057
BstXI	CCANNNNNNTGG	2 cut(s)	2056, 2875
BstYI	RGATCY	3 cut(s)	431, 562, 1057
BstZI	CGGCCG	1 cut(s)	711
BsuI	GTATCC	1 cut(s)	2376
BsuRI	GGCC	6 cut(s)	696, 713, 755, 805, 2025, 2325
BtgI	CCRYGG	3 cut(s)	1179, 2130, 2766
BtgZI	GCGATG	1 cut(s)	630
BtrI	CACGTC	1 cut(s)	1328
BtsIMutI	CAGTG	5 cut(s)	346, 558, 2205, 2346, 2649
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	9 cut(s)	402, 1134, 1531, 1667, 2046, 2188, 2279, 2323, 2672
CaiI	CAGNNNCTG	2 cut(s)	557, 2819
CciI	TCATGA	3 cut(s)	543, 2217, 2950
CfoI	GCGC	2 cut(s)	1980, 2192
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	7 cut(s)	96, 674, 695, 803, 1615, 2114, 2525
CseI	GACGC	1 cut(s)	98
CsiI	ACCWGGT	1 cut(s)	1273
Csp6I	GTAC	7 cut(s)	500, 958, 1508, 1990, 2545, 2824, 2891
CspAI	ACCGGT	1 cut(s)	93
CviQI	GTAC	7 cut(s)	500, 958, 1508, 1990, 2545, 2824, 2891
DraI	TTTAAA	2 cut(s)	1045, 2397
DraIII	CACNNNGTG	1 cut(s)	2653
EaeI	YGGCCR	3 cut(s)	711, 2023, 2323
EagI	CGGCCG	1 cut(s)	711
EciI	GGCGGA	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	760
EclXI	CGGCCG	1 cut(s)	711
Eco130I	CCWWGG	9 cut(s)	525, 1179, 1601, 1610, 2049, 2130, 2307, 2753, 2766
Eco24I	GRGCYC	2 cut(s)	762, 1372
Eco31I	GGTCTC	2 cut(s)	1264, 2421
Eco47I	GGWCC	5 cut(s)	96, 674, 1615, 2114, 2525
Eco47III	AGCGCT	1 cut(s)	2191
Eco52I	CGGCCG	1 cut(s)	711
Eco53kI	GAGCTC	1 cut(s)	760
Eco57I	CTGAAG	3 cut(s)	849, 2370, 2615
EcoICRI	GAGCTC	1 cut(s)	760
EcoO109I	RGGNCCY	2 cut(s)	803, 2114
EcoRII	CCWGG	3 cut(s)	1273, 2521, 2975
EcoT14I	CCWWGG	9 cut(s)	525, 1179, 1601, 1610, 2049, 2130, 2307, 2753, 2766
EcoT22I	ATGCAT	2 cut(s)	591, 2688
EcoT38I	GRGCYC	2 cut(s)	762, 1372
ErhI	CCWWGG	9 cut(s)	525, 1179, 1601, 1610, 2049, 2130, 2307, 2753, 2766
Esp3I	CGTCTC	1 cut(s)	72
FalI	AAGNNNNNCTT	4 cut(s)	1649, 1681, 2839, 2871
FaqI	GGGAC	5 cut(s)	257, 504, 1628, 2100, 2824
FauI	CCCGC	2 cut(s)	1134, 2150
FbaI	TGATCA	1 cut(s)	2644
FriOI	GRGCYC	2 cut(s)	762, 1372
FspBI	CTAG	6 cut(s)	914, 1079, 1338, 2604, 2627, 3034
GlaI	GCGC	2 cut(s)	1979, 2191
GsuI	CTGGAG	2 cut(s)	127, 2344
HaeII	RGCGCY	1 cut(s)	2193
HaeIII	GGCC	6 cut(s)	696, 713, 755, 805, 2025, 2325
HapII	CCGG	7 cut(s)	35, 94, 255, 261, 293, 304, 656
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	2 cut(s)	1980, 2192
Hin1I	GRCGYC	1 cut(s)	109
Hin6I	GCGC	2 cut(s)	1978, 2190
HinP1I	GCGC	2 cut(s)	1978, 2190
HincII	GTYRAC	1 cut(s)	1296
HindII	GTYRAC	1 cut(s)	1296
HindIII	AAGCTT	2 cut(s)	1038, 1727
HpaII	CCGG	7 cut(s)	35, 94, 255, 261, 293, 304, 656
HphI	GGTGA	8 cut(s)	48, 116, 293, 641, 1199, 1343, 2276, 2855
Hpy166II	GTNNAC	8 cut(s)	982, 1296, 1471, 1887, 1990, 2545, 2660, 2838
Hpy8I	GTNNAC	8 cut(s)	982, 1296, 1471, 1887, 1990, 2545, 2660, 2838
HpyCH4III	ACNGT	8 cut(s)	60, 122, 858, 1315, 1560, 1619, 2653, 2815
HpyCH4IV	ACGT	2 cut(s)	1327, 2698
HpySE526I	ACGT	2 cut(s)	1327, 2698
Hsp92I	GRCGYC	1 cut(s)	109
HspAI	GCGC	2 cut(s)	1978, 2190
Kpn2I	TCCGGA	1 cut(s)	655
Ksp22I	TGATCA	1 cut(s)	2644
Lsp1109I	GCAGC	9 cut(s)	385, 712, 715, 743, 1135, 1320, 1399, 1855, 2620
MabI	ACCWGGT	1 cut(s)	1273
MaeI	CTAG	6 cut(s)	914, 1079, 1338, 2604, 2627, 3034
MaeII	ACGT	2 cut(s)	1327, 2698
MaeIII	GTNAC	2 cut(s)	122, 868
MflI	RGATCY	3 cut(s)	431, 562, 1057
MhlI	GDGCHC	5 cut(s)	762, 984, 1372, 2461, 2752
MlyI	GAGTC	3 cut(s)	245, 1808, 2220
MmeI	TCCRAC	4 cut(s)	105, 114, 756, 1542
Mph1103I	ATGCAT	2 cut(s)	591, 2688
MroI	TCCGGA	1 cut(s)	655
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	9 cut(s)	441, 567, 578, 1044, 1092, 1119, 1218, 1317, 2396
MslI	CAYNNNNRTG	7 cut(s)	649, 1839, 1985, 2031, 2265, 2691, 2771
MspI	CCGG	7 cut(s)	35, 94, 255, 261, 293, 304, 656
MspR9I	CCNGG	5 cut(s)	262, 305, 1275, 2523, 2977
Mva1269I	GAATGC	3 cut(s)	589, 1980, 2605
MvaI	CCWGG	3 cut(s)	1275, 2523, 2977
MvnI	CGCG	1 cut(s)	316
NciI	CCSGG	2 cut(s)	262, 305
NcoI	CCATGG	3 cut(s)	1179, 2130, 2766
NlaIV	GGNNCC	9 cut(s)	142, 259, 302, 936, 1227, 1616, 1914, 2116, 2520
NmeAIII	GCCGAG	3 cut(s)	739, 781, 1857
NmuCI	GTSAC	2 cut(s)	122, 868
NsiI	ATGCAT	2 cut(s)	591, 2688
NspI	RCATGY	2 cut(s)	1844, 2585
PagI	TCATGA	3 cut(s)	543, 2217, 2950
PaqCI	CACCTGC	1 cut(s)	823
PciI	ACATGT	2 cut(s)	1840, 2581
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PctI	GAATGC	3 cut(s)	589, 1980, 2605
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	7 cut(s)	53, 86, 284, 547, 836, 1940, 2590
PflMI	CCANNNNNTGG	1 cut(s)	931
PfoI	TCCNGGA	1 cut(s)	2521
PinAI	ACCGGT	1 cut(s)	93
PleI	GAGTC	3 cut(s)	245, 1807, 2220
PpsI	GAGTC	3 cut(s)	245, 1807, 2220
PpuMI	RGGWCCY	1 cut(s)	2114
PscI	ACATGT	2 cut(s)	1840, 2581
Psp124BI	GAGCTC	1 cut(s)	762
Psp5II	RGGWCCY	1 cut(s)	2114
Psp6I	CCWGG	3 cut(s)	1273, 2521, 2975
PspGI	CCWGG	3 cut(s)	1273, 2521, 2975
PspN4I	GGNNCC	9 cut(s)	142, 259, 302, 936, 1227, 1616, 1914, 2116, 2520
PspPI	GGNCC	7 cut(s)	96, 674, 695, 803, 1615, 2114, 2525
PspPPI	RGGWCCY	1 cut(s)	2114
PstI	CTGCAG	1 cut(s)	733
PstNI	CAGNNNCTG	2 cut(s)	557, 2819
PsuI	RGATCY	3 cut(s)	431, 562, 1057
RsaI	GTAC	7 cut(s)	501, 959, 1509, 1991, 2546, 2825, 2892
RsaNI	GTAC	7 cut(s)	500, 958, 1508, 1990, 2545, 2824, 2891
RseI	CAYNNNNRTG	7 cut(s)	649, 1839, 1985, 2031, 2265, 2691, 2771
SacI	GAGCTC	1 cut(s)	762
SaqAI	TTAA	9 cut(s)	441, 567, 578, 1044, 1092, 1119, 1218, 1317, 2396
Sau96I	GGNCC	7 cut(s)	96, 674, 695, 803, 1615, 2114, 2525
ScaI	AGTACT	1 cut(s)	2892
SchI	GAGTC	3 cut(s)	245, 1808, 2220
ScrFI	CCNGG	5 cut(s)	262, 305, 1275, 2523, 2977
SduI	GDGCHC	5 cut(s)	762, 984, 1372, 2461, 2752
SexAI	ACCWGGT	1 cut(s)	1273
SfcI	CTRYAG	2 cut(s)	558, 729
SinI	GGWCC	5 cut(s)	96, 674, 1615, 2114, 2525
SmiMI	CAYNNNNRTG	7 cut(s)	649, 1839, 1985, 2031, 2265, 2691, 2771
SmlI	CTYRAG	3 cut(s)	476, 1005, 1097
SmoI	CTYRAG	3 cut(s)	476, 1005, 1097
SpeI	ACTAGT	2 cut(s)	1337, 2626
SsiI	CCGC	9 cut(s)	208, 279, 314, 1069, 1141, 1534, 1638, 2157, 2326
SspMI	CTAG	6 cut(s)	914, 1079, 1338, 2604, 2627, 3034
SstI	GAGCTC	1 cut(s)	762
StyD4I	CCNGG	5 cut(s)	260, 303, 1273, 2521, 2975
StyI	CCWWGG	9 cut(s)	525, 1179, 1601, 1610, 2049, 2130, 2307, 2753, 2766
TaaI	ACNGT	8 cut(s)	60, 122, 858, 1315, 1560, 1619, 2653, 2815
TaiI	ACGT	2 cut(s)	1330, 2701
TaqI	TCGA	3 cut(s)	101, 218, 269
TatI	WGTACW	5 cut(s)	499, 1989, 2544, 2823, 2890
TauI	GCSGC	3 cut(s)	316, 1536, 2328
TfiI	GAWTC	7 cut(s)	53, 86, 284, 547, 836, 1940, 2590
Tru1I	TTAA	9 cut(s)	441, 567, 578, 1044, 1092, 1119, 1218, 1317, 2396
Tru9I	TTAA	9 cut(s)	441, 567, 578, 1044, 1092, 1119, 1218, 1317, 2396
TscAI	CASTG	5 cut(s)	346, 558, 2212, 2353, 2656
TseFI	GTSAC	2 cut(s)	122, 868
TseI	GCWGC	9 cut(s)	373, 725, 728, 731, 1148, 1308, 1412, 1868, 2608
Tsp45I	GTSAC	2 cut(s)	122, 868
TspRI	CASTG	5 cut(s)	346, 558, 2212, 2353, 2656
Van91I	CCANNNNNTGG	1 cut(s)	931
VneI	GTGCAC	1 cut(s)	980
VpaK11BI	GGWCC	5 cut(s)	96, 674, 1615, 2114, 2525
XapI	RAATTY	3 cut(s)	344, 1115, 1905
XceI	RCATGY	2 cut(s)	1844, 2585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1558
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	6 cut(s)	914, 1079, 1338, 2604, 2627, 3034
ZrmI	AGTACT	1 cut(s)	2892
Zsp2I	ATGCAT	2 cut(s)	591, 2688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.