Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Reverse (-)

14430676 .. 14437642

Gene Structure 6967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10720.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3588 bp

ATGCATCCGAAGCGATCGGAGGGATTACGGAGCAGCGGTCGGATCAGCCGGCGTCCGACAAGTTACTCTCGGAGCATCTACTATTACACCCCGAGTAGCAGTAGCATGATTCACAAACGGCGCAGGAAGGCCAAGTCGAAGAACAGACCTGCTGCCTCCCGAATCGCTAAGATGATGCGTTCCCAGCGATCTCCCCAGCCCACCGCCACCACTCCGGTCGCCGCGAACCTCAATACAAACGTGCCTCGCCGCTCCGAACGAAGGAGGACTCTGTCCGTCAAGAATCCCAATTATGCATCCGACTCTTCCGACGCTGATGAAGACATGATGAATCGGGTTGCGTATCAGGATGAGTCATCTCCTTCCAAGCACAACAGCAACAACAAACAGATGGTGGAGAGACCGACCCCTCGCCGTGAAGGATTGCGCCCTCGTCGCTCTAAGACTATTTCCAATGAAGATTTAATTTTTGGATATGAAGATGAGCCGGGTAGCTCCGAAGACAAGGCCGAACAAGAGGAAACTGAAAATGGGCAGGATATTGAATACAATGATGCAGATGATGGTCAGAATGAGGGTGAGGGTGACGACATGGGTGATGACGATGACGATGATGAAGAGGGCGAAGAGGAGCAAGATGGAAGAAGACGTTATGATCTTCGAAATCGTGCAGAGGTCCGCAGGCTCTCTATTGAACAAGGTAAGCGGAGACCACGATCTCCTCGCAGAGTATTACACCAAGGAATGGGGCCAAAGGTCAGCAGGGATGTAAGGAAGGGTGGCTCACGAGTCCATAAGCGTCACCGAATCTCAAGGACTGATGATTCTGATGACTCCCTTCTTGTGGATGAGCTCGACCAAGGCCCTGCAATTCCGTGGGGGAAAGGCGGGAGCAGATCAGGACCTCCTTGGCTTTTTGGGGGGCTTGATATGCATGGAACAACAACATGGGGGTTGAATGTTGCTGCCTCGGGTTGGGGTCACCAGGGTGATGCTTTTGCTACCTTGACATCTGGAATTCAAACTGCCGGGCCAAGTTCAAAGGGAGGGGCAGACATACAACCCTTGCAGGTTGATGATAGTGTCAGTTTTGAGGATATAGGGGGACTTTCTGAATATATTGATGCTTTGAAGGAAATGGTTTTCTTTCCTTTACTGTATCCAGATTTCTTTGCAAGTTATCATATCACCCCACCAAGGGGAGTTTTGTTATGTGGTCCTCCTGGTACAGGGAAAACATTAATAGCCAGAGCCTTAGCCTCTGCTGCGTCCAAGGCTGGTCAGAAAGTGAGTTTTTACATGAGGAAGGGTGCAGATGTGCTGAGCAAGTGGGTTGGCGAGGCTGAAAGACAGTTGAAACTTCTTTTTGAGGAAGCACAAAGAAATCAACCTTCTATCATATTCTTTGATGAAATAGACGGGCTGGCTCCTGTAAGATCCAGTAAACAAGAGCAAATTCATAATTCCATTGTGTCTACCTTGCTTGCTCTCATGGATGGTCTTGATTCCCGTGGACAAGTGGTTTTGATCGGGGCAACCAACCGAATTGATGCAATTGATGGAGCTTTGCGACGCCCCGGTAGATTTGATCGTGAATTCAATTTTTCTTTGCCGGGTTGTGAGGCCCGTGCTGAGATTTTAGACATTCACAGTCGGAAATGGAAGCATCCTCCTTCAGATGAGTTAAAATTGGAGCTTGCAGCTAGTTGTGTTGGATATTGTGGTGCTGATTTAAAGGCTCTTTGCACGGAAGCTGCCATTCATGCATTCCGTGAAAAATATCCTCAGGTCTACACAAGTGATGAGAAATTTGTAATTGATGTTGATTCAGTAAGGGTTGAAAAGTATCACTTCATTGAAGCCATGTCAACAATCACCCCAGCTGCTCACAGAGGTGCTGTTGTTCACTCTAGGCCATTATCTTTAGTAGTTGCACCATGCCTGCAGAGGCATCTCCAAAGAGCCATGAACTATATATCCGATATTTTCCCTCTGATTGGAGTGTCATCAGAATTGACCAAGCTTACGATGCTCACTTGTGGCTCTGCTATTCCTCTTGTTTATAGGCCTCGGCTTCTTCTATGTGGCGGTGAAGGTTCTGGCCTGGATCATCTTGGGCCTGCTATTTTACATGAACTCGAGAAGTTTCCTGTTCATTCTTTAGGACTTCCATCTCTTCTATCTGATCCTAGTGCAAAGACACCGGAGGAAGCACTGGTACATATATTCGGTGAAGCAAGGAGAACAACGCCATCAATTCTCTACTTGCCACAGTTCAATATGTGGTGGGAGACGGCACATGAGCAGCTCCGCGCAGTTTTGCTGACTTTACTAGAAGAATTTCCATCTGAGTTACCTGTATTACTACTTGCAACATCATCAGTGCCACCTGCTGAACTTGATGCCATGACGTCTTCAATATTTTTCGAACGATCTGTCTATCAGGTGGGTACTCTATCTACTGAAGACAGATCTTTGTTTTTTGACCGTCTGATTGAAGCTGCCTTGTCAATCATGTTGGAGGGCACAACTAAAAGGTCTCAGGAATCAGTATCTGTCCCTGAACTTCCAAAGGCTCCAAAAGTGGAAAGCGGTCCAAAGGTGTCAGAGTTAAAAGCAAAGGTAGAAGCTGAGCAGCATGCTCTTCGCCGATTGCGGATGTGCCTCAGAGATGTTTGCAATCGAGTTTTATACGATAAGAGGTTTAGTGCTTTTCACTATCCTGTCTTGGATGAGGATGCTCCAAACTATCGCTCAATTATCCAAAATCCTATGGATGTTGCGACTCTGCTGCAGCGTGTTGACTCTGGGTTGTATATTACATGTTCAGCATTCCTGCAAGATGTCGATCTTATAGTTTCTAATGCAAAGGCCTATAATGGAGATGATTACAATGGTGCTAGGATTGTTAGTAGAGGTTATGAGCTTCGAGATGCGGTACACGGAATGCTGTCACAGATGGACCCTGCATTAGTTGCATATTGTGATAAGATTGCTGCTCAAGGTGGTCCAGAACATATACCAGAAGATTTAGGTGTAGCTACTTTCCCATCAATACCTGTTGTACAGCTGGGAACTGTCACTAGGGCGAGTGCTCGACTTCGTAATGTCCAACCTGAGGTAAGTCTGGATCATAGCTATGAGGCACTCAAACGACTGAAGAAGAGTATTGAAGCCACACCTGCAGCTCCAACAGCAGAAGACAAGTCACAGCATCAAGGTTCAGTACCGTCCACGTCATCTCAGGAACCCGAGATAAATAACACAGGTCTCGGAGTGCCAGAAACCTCTTCTGTTGGTCTCAATCAGCTTGAAACATCTGACATGGTAGAAGTTTCTAGCAATGCTGATGCGAGTGGATCTGAAGACATCAAGATGTTAGATGGTGAGATTACAGACCAAATGGAGTCTATCAAGAGGCTTTTTGTGGAGCAGACCAAAACTTATGACATTCCACAGCTTGAGAGGCTTTACACAAGAATTATGAAGGGCATTTTTGACATCAAGGACAAGAGTGATATAGATGGCACTAAGCAATTAATTTTGAAGTATTTGTTGAAATTTGCAGAGGATAAAGCAAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

1196

Amino Acids

132.59

Weight (kDa)

5.84

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IstB_IS21	PF01695	301 - 385	3.2e-07	IstB-like ATP binding protein
AAA	PF00004	303 - 437	8.1e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	466 - 502	1.6e-10	AAA+ lid domain
Bromodomain	PF00439	799 - 864	2.8e-13	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2398, 3190
AatII	GACGTC	1 cut(s)	2414
Acc36I	ACCTGC	4 cut(s)	157, 1060, 2398, 3190
AccB7I	CCANNNNNTGG	1 cut(s)	745
AccBSI	CCGCTC	1 cut(s)	252
AccI	GTMKAC	2 cut(s)	1475, 1791
AccII	CGCG	2 cut(s)	224, 2313
AclWI	GGATC	6 cut(s)	50, 1431, 2115, 2180, 3138, 3367
AcsI	RAATTY	7 cut(s)	1017, 1455, 1595, 1808, 2339, 3560, 3580
AcuI	CTGAAG	4 cut(s)	1659, 2484, 3179, 3384
AcyI	GRCGYC	3 cut(s)	52, 1573, 2411
AfaI	GTAC	6 cut(s)	1228, 2220, 2452, 2940, 3066, 3228
AflIII	ACRYGT	1 cut(s)	2822
AjiI	CACGTC	1 cut(s)	3237
AjnI	CCWGG	3 cut(s)	984, 1222, 2103
AleI	CACNNNNGTG	2 cut(s)	987, 1893
AloI	GAACNNNNNNTCC	2 cut(s)	1961, 1993
Alw21I	GWGCWC	2 cut(s)	855, 3097
Alw26I	GTCTC	6 cut(s)	394, 703, 2285, 2544, 3275, 3305
AlwI	GGATC	6 cut(s)	50, 1431, 2115, 2180, 3138, 3367
AlwNI	CAGNNNCTG	1 cut(s)	2555
Ama87I	CYCGRG	4 cut(s)	91, 970, 2138, 3251
ApoI	RAATTY	7 cut(s)	1017, 1455, 1595, 1808, 2339, 3560, 3580
ArsI	GACNNNNNNTTYG	2 cut(s)	2421, 2453
AseI	ATTAAT	2 cut(s)	1241, 3539
Asp700I	GAANNNNTTC	1 cut(s)	2340
AspLEI	GCGC	3 cut(s)	123, 429, 2315
AsuC2I	CCSGG	4 cut(s)	489, 1030, 1578, 1614
AsuII	TTCGAA	2 cut(s)	661, 2427
AvaI	CYCGRG	4 cut(s)	91, 970, 2138, 3251
AvaII	GGWCC	6 cut(s)	676, 902, 1217, 2594, 2962, 3008
AxyI	CCTNAGG	2 cut(s)	1785, 3117
BaeGI	GKGCMC	1 cut(s)	2528
BanII	GRGCYC	1 cut(s)	855
BarI	GAAGNNNNNNTAC	2 cut(s)	2202, 2234
BauI	CACGAG	1 cut(s)	786
BbsI	GAAGAC	7 cut(s)	327, 507, 652, 2406, 2472, 3207, 3372
Bbv12I	GWGCWC	2 cut(s)	855, 3097
BceAI	ACGGC	3 cut(s)	134, 399, 2310
BcgI	CGANNNNNNTGC	4 cut(s)	2627, 2661, 2773, 2807
BciT130I	CCWGG	3 cut(s)	986, 1224, 2105
BciVI	GTATCC	1 cut(s)	1170
BcnI	CCSGG	4 cut(s)	489, 1030, 1578, 1614
BcoDI	GTCTC	6 cut(s)	394, 703, 2285, 2544, 3275, 3305
BfaI	CTAG	7 cut(s)	1704, 1911, 2190, 2333, 2901, 3084, 3339
BfmI	CTRYAG	3 cut(s)	1943, 2792, 3183
BfuAI	ACCTGC	4 cut(s)	157, 1060, 2398, 3190
BfuI	GTATCC	1 cut(s)	1170
BglII	AGATCT	1 cut(s)	2471
BlpI	GCTNAGC	2 cut(s)	1322, 2631
Bme1390I	CCNGG	7 cut(s)	489, 986, 1030, 1224, 1578, 1614, 2105
Bme18I	GGWCC	6 cut(s)	676, 902, 1217, 2594, 2962, 3008
BmeT110I	CYCGRG	4 cut(s)	91, 970, 2138, 3251
BmgBI	CACGTC	1 cut(s)	3237
BmiI	GGNNCC	5 cut(s)	750, 1428, 2577, 2964, 3249
BmrFI	CCNGG	7 cut(s)	489, 986, 1030, 1224, 1578, 1614, 2105
BpiI	GAAGAC	7 cut(s)	327, 507, 652, 2406, 2472, 3207, 3372
Bpu10I	CCTNAGC	1 cut(s)	1255
Bpu1102I	GCTNAGC	2 cut(s)	1322, 2631
Bpu14I	TTCGAA	2 cut(s)	661, 2427
BpuEI	CTTGAG	3 cut(s)	796, 2985, 3482
BpuMI	CCSGG	4 cut(s)	489, 1030, 1578, 1614
BsaBI	GATNNNNATC	1 cut(s)	2847
BsaHI	GRCGYC	3 cut(s)	52, 1573, 2411
BsaI	GGTCTC	5 cut(s)	394, 703, 2544, 3275, 3305
BsaWI	WCCGGW	2 cut(s)	214, 2203
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	1440, 2220
Bse21I	CCTNAGG	2 cut(s)	1785, 3117
Bse3DI	GCAATG	1 cut(s)	3349
Bse8I	GATNNNNATC	1 cut(s)	2847
BseBI	CCWGG	3 cut(s)	986, 1224, 2105
BseJI	GATNNNNATC	1 cut(s)	2847
BseMI	GCAATG	1 cut(s)	3349
BseMII	CTCAG	9 cut(s)	1313, 1623, 1799, 2340, 2555, 2622, 2680, 3108, 3257
BseNI	ACTGG	2 cut(s)	1440, 2220
BseRI	GAGGAG	2 cut(s)	644, 711
BseSI	GKGCMC	1 cut(s)	2528
BseYI	CCCAGC	4 cut(s)	183, 195, 1879, 3070
BsgI	GTGCAG	2 cut(s)	690, 1332
Bsh1236I	CGCG	2 cut(s)	224, 2313
Bsh1285I	CGRYCG	3 cut(s)	17, 40, 219
BsiEI	CGRYCG	3 cut(s)	17, 40, 219
BsiHKAI	GWGCWC	2 cut(s)	855, 3097
BsiHKCI	CYCGRG	4 cut(s)	91, 970, 2138, 3251
BsiSI	CCGG	7 cut(s)	49, 215, 488, 1029, 1578, 1613, 2204
BslFI	GGGAC	2 cut(s)	1119, 2543
BsmAI	GTCTC	6 cut(s)	394, 703, 2285, 2544, 3275, 3305
BsmBI	CGTCTC	1 cut(s)	2285
BsmFI	GGGAC	2 cut(s)	1119, 2543
BsmI	GAATGC	3 cut(s)	1766, 2831, 2952
Bso31I	GGTCTC	5 cut(s)	394, 703, 2544, 3275, 3305
BsoBI	CYCGRG	4 cut(s)	91, 970, 2138, 3251
Bsp119I	TTCGAA	2 cut(s)	661, 2427
Bsp1286I	GDGCHC	3 cut(s)	855, 2528, 3097
Bsp1407I	TGTACA	1 cut(s)	3064
Bsp1720I	GCTNAGC	2 cut(s)	1322, 2631
BspCNI	CTCAG	9 cut(s)	1314, 1624, 1798, 2341, 2554, 2623, 2679, 3109, 3256
BspFNI	CGCG	2 cut(s)	224, 2313
BspLI	GGNNCC	5 cut(s)	750, 1428, 2577, 2964, 3249
BspMAI	CTGCAG	3 cut(s)	1947, 2796, 3187
BspMI	ACCTGC	4 cut(s)	157, 1060, 2398, 3190
BspPI	GGATC	6 cut(s)	50, 1431, 2115, 2180, 3138, 3367
BspQI	GCTCTTC	1 cut(s)	2649
BspT104I	TTCGAA	2 cut(s)	661, 2427
BspTNI	GGTCTC	5 cut(s)	394, 703, 2544, 3275, 3305
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	3349
BsrFI	RCCGGY	1 cut(s)	48
BsrGI	TGTACA	1 cut(s)	3064
BsrI	ACTGG	2 cut(s)	1440, 2220
BssAI	RCCGGY	1 cut(s)	48
BssNI	GRCGYC	3 cut(s)	52, 1573, 2411
BssSI	CACGAG	1 cut(s)	786
BssT1I	CCWWGG	5 cut(s)	739, 859, 908, 1196, 1272
Bst2BI	CACGAG	1 cut(s)	786
Bst2UI	CCWGG	3 cut(s)	986, 1224, 2105
Bst4CI	ACNGT	7 cut(s)	1158, 1353, 1652, 2274, 2489, 3079, 3231
Bst6I	CTCTTC	7 cut(s)	310, 612, 621, 2181, 2649, 3158, 3295
BstACI	GRCGYC	3 cut(s)	52, 1573, 2411
BstAPI	GCANNNNNTGC	1 cut(s)	2975
BstAUI	TGTACA	1 cut(s)	3064
BstBI	TTCGAA	2 cut(s)	661, 2427
BstC8I	GCNNGC	8 cut(s)	50, 683, 1425, 1485, 1698, 1943, 2121, 2640
BstDSI	CCRYGG	2 cut(s)	875, 1510
BstEII	GGTNACC	1 cut(s)	980
BstENI	CCTNNNNNAGG	1 cut(s)	1227
BstFNI	CGCG	2 cut(s)	224, 2313
BstHHI	GCGC	3 cut(s)	123, 429, 2315
BstMAI	GTCTC	6 cut(s)	394, 703, 2285, 2544, 3275, 3305
BstMCI	CGRYCG	3 cut(s)	17, 40, 219
BstNI	CCWGG	3 cut(s)	986, 1224, 2105
BstNSI	RCATGY	2 cut(s)	2642, 2826
BstPI	GGTNACC	1 cut(s)	980
BstSCI	CCNGG	7 cut(s)	487, 984, 1028, 1222, 1576, 1612, 2103
BstSFI	CTRYAG	3 cut(s)	1943, 2792, 3183
BstSLI	GKGCMC	1 cut(s)	2528
BstUI	CGCG	2 cut(s)	224, 2313
BstV2I	GAAGAC	7 cut(s)	327, 507, 652, 2406, 2472, 3207, 3372
BstX2I	RGATCY	3 cut(s)	1436, 2471, 3359
BstYI	RGATCY	3 cut(s)	1436, 2471, 3359
Bsu36I	CCTNAGG	2 cut(s)	1785, 3117
BsuI	GTATCC	1 cut(s)	1170
BtgI	CCRYGG	2 cut(s)	875, 1510
BtrI	CACGTC	1 cut(s)	3237
BtsIMutI	CAGTG	2 cut(s)	2213, 2388
BveI	ACCTGC	4 cut(s)	157, 1060, 2398, 3190
Cac8I	GCNNGC	8 cut(s)	50, 683, 1425, 1485, 1698, 1943, 2121, 2640
CaiI	CAGNNNCTG	1 cut(s)	2555
CfoI	GCGC	3 cut(s)	123, 429, 2315
Cfr10I	RCCGGY	1 cut(s)	48
CseI	GACGC	5 cut(s)	41, 320, 788, 1257, 1581
Csp6I	GTAC	6 cut(s)	1227, 2219, 2451, 2939, 3065, 3227
CviQI	GTAC	6 cut(s)	1227, 2219, 2451, 2939, 3065, 3227
DraI	TTTAAA	1 cut(s)	1734
Eam1104I	CTCTTC	7 cut(s)	310, 612, 621, 2181, 2649, 3158, 3295
EarI	CTCTTC	7 cut(s)	310, 612, 621, 2181, 2649, 3158, 3295
Ecl136II	GAGCTC	1 cut(s)	853
Eco130I	CCWWGG	5 cut(s)	739, 859, 908, 1196, 1272
Eco147I	AGGCCT	2 cut(s)	2068, 2873
Eco24I	GRGCYC	1 cut(s)	855
Eco31I	GGTCTC	5 cut(s)	394, 703, 2544, 3275, 3305
Eco47I	GGWCC	6 cut(s)	676, 902, 1217, 2594, 2962, 3008
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	4 cut(s)	1659, 2484, 3179, 3384
Eco81I	CCTNAGG	2 cut(s)	1785, 3117
Eco88I	CYCGRG	4 cut(s)	91, 970, 2138, 3251
Eco91I	GGTNACC	1 cut(s)	980
EcoICRI	GAGCTC	1 cut(s)	853
EcoNI	CCTNNNNNAGG	1 cut(s)	1227
EcoO109I	RGGNCCY	2 cut(s)	863, 902
EcoO65I	GGTNACC	1 cut(s)	980
EcoRI	GAATTC	2 cut(s)	1017, 1595
EcoRII	CCWGG	3 cut(s)	984, 1222, 2103
EcoT14I	CCWWGG	5 cut(s)	739, 859, 908, 1196, 1272
EcoT22I	ATGCAT	4 cut(s)	6, 298, 936, 1768
EcoT38I	GRGCYC	1 cut(s)	855
ErhI	CCWWGG	5 cut(s)	739, 859, 908, 1196, 1272
Esp3I	CGTCTC	1 cut(s)	2285
FalI	AAGNNNNNCTT	2 cut(s)	1835, 1867
FaqI	GGGAC	2 cut(s)	1119, 2543
FauI	CCCGC	1 cut(s)	881
FblI	GTMKAC	2 cut(s)	1475, 1791
FriOI	GRGCYC	1 cut(s)	855
FspBI	CTAG	7 cut(s)	1704, 1911, 2190, 2333, 2901, 3084, 3339
GlaI	GCGC	3 cut(s)	122, 428, 2314
GsaI	CCCAGC	4 cut(s)	187, 199, 1883, 3074
HapII	CCGG	7 cut(s)	49, 215, 488, 1029, 1578, 1613, 2204
HgaI	GACGC	5 cut(s)	41, 320, 788, 1257, 1581
HhaI	GCGC	3 cut(s)	123, 429, 2315
Hin1I	GRCGYC	3 cut(s)	52, 1573, 2411
Hin6I	GCGC	3 cut(s)	121, 427, 2313
HinP1I	GCGC	3 cut(s)	121, 427, 2313
HincII	GTYRAC	2 cut(s)	1869, 2803
HindII	GTYRAC	2 cut(s)	1869, 2803
HindIII	AAGCTT	1 cut(s)	2021
HpaII	CCGG	7 cut(s)	49, 215, 488, 1029, 1578, 1613, 2204
Hpy166II	GTNNAC	9 cut(s)	1445, 1476, 1514, 1792, 1869, 1906, 2803, 2941, 3234
Hpy8I	GTNNAC	9 cut(s)	1445, 1476, 1514, 1792, 1869, 1906, 2803, 2941, 3234
Hpy99I	CGWCG	3 cut(s)	314, 438, 1575
HpyCH4III	ACNGT	7 cut(s)	1158, 1353, 1652, 2274, 2489, 3079, 3231
HpyCH4IV	ACGT	4 cut(s)	240, 649, 2411, 3236
HpySE526I	ACGT	4 cut(s)	240, 649, 2411, 3236
Hsp92I	GRCGYC	3 cut(s)	52, 1573, 2411
HspAI	GCGC	3 cut(s)	121, 427, 2313
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
LguI	GCTCTTC	1 cut(s)	2649
MaeI	CTAG	7 cut(s)	1704, 1911, 2190, 2333, 2901, 3084, 3339
MaeII	ACGT	4 cut(s)	240, 649, 2411, 3236
MaeIII	GTNAC	8 cut(s)	62, 584, 800, 980, 2352, 2952, 3079, 3207
MbiI	CCGCTC	1 cut(s)	252
MfeI	CAATTG	1 cut(s)	1554
MflI	RGATCY	3 cut(s)	1436, 2471, 3359
MhlI	GDGCHC	3 cut(s)	855, 2528, 3097
MlyI	GAGTC	8 cut(s)	262, 296, 362, 798, 827, 2779, 2798, 3416
MmeI	TCCRAC	9 cut(s)	20, 80, 324, 333, 1634, 1693, 2499, 3136, 3215
Mph1103I	ATGCAT	4 cut(s)	6, 298, 936, 1768
MroNI	GCCGGC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	2340
MseI	TTAA	6 cut(s)	464, 1241, 1685, 1733, 2612, 3539
MslI	CAYNNNNRTG	4 cut(s)	987, 1893, 3138, 3374
MspA1I	CMGCKG	3 cut(s)	36, 1883, 3070
MspI	CCGG	7 cut(s)	49, 215, 488, 1029, 1578, 1613, 2204
MspR9I	CCNGG	7 cut(s)	489, 986, 1030, 1224, 1578, 1614, 2105
MunI	CAATTG	1 cut(s)	1554
Mva1269I	GAATGC	3 cut(s)	1766, 2831, 2952
MvaI	CCWGG	3 cut(s)	986, 1224, 2105
MvnI	CGCG	2 cut(s)	224, 2313
NaeI	GCCGGC	1 cut(s)	50
NciI	CCSGG	4 cut(s)	489, 1030, 1578, 1614
NgoMIV	GCCGGC	1 cut(s)	48
NlaIV	GGNNCC	5 cut(s)	750, 1428, 2577, 2964, 3249
NmeAIII	GCCGAG	1 cut(s)	2050
NmuCI	GTSAC	6 cut(s)	584, 800, 980, 2952, 3079, 3207
NsiI	ATGCAT	4 cut(s)	6, 298, 936, 1768
NspI	RCATGY	2 cut(s)	2642, 2826
NspV	TTCGAA	2 cut(s)	661, 2427
OliI	CACNNNNGTG	2 cut(s)	987, 1893
PaeI	GCATGC	1 cut(s)	2642
PaeR7I	CTCGAG	1 cut(s)	2138
PaqCI	CACCTGC	2 cut(s)	2398, 3190
PceI	AGGCCT	2 cut(s)	2068, 2873
PciI	ACATGT	1 cut(s)	2822
PciSI	GCTCTTC	1 cut(s)	2649
PctI	GAATGC	3 cut(s)	1766, 2831, 2952
PdiI	GCCGGC	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	2340
PfeI	GAWTC	9 cut(s)	109, 162, 283, 331, 807, 824, 1505, 1826, 2546
PflFI	GACNNNGTC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	745
Ple19I	CGATCG	1 cut(s)	17
PleI	GAGTC	8 cut(s)	262, 296, 361, 797, 827, 2779, 2798, 3415
PpsI	GAGTC	8 cut(s)	262, 296, 361, 797, 827, 2779, 2798, 3415
PpuMI	RGGWCCY	1 cut(s)	902
PscI	ACATGT	1 cut(s)	2822
PshBI	ATTAAT	2 cut(s)	1241, 3539
Psp124BI	GAGCTC	1 cut(s)	855
Psp5II	RGGWCCY	1 cut(s)	902
Psp6I	CCWGG	3 cut(s)	984, 1222, 2103
PspEI	GGTNACC	1 cut(s)	980
PspFI	CCCAGC	4 cut(s)	183, 195, 1879, 3070
PspGI	CCWGG	3 cut(s)	984, 1222, 2103
PspN4I	GGNNCC	5 cut(s)	750, 1428, 2577, 2964, 3249
PspPPI	RGGWCCY	1 cut(s)	902
PstI	CTGCAG	3 cut(s)	1947, 2796, 3187
PstNI	CAGNNNCTG	1 cut(s)	2555
PsuI	RGATCY	3 cut(s)	1436, 2471, 3359
PsyI	GACNNNGTC	1 cut(s)	271
PvuI	CGATCG	1 cut(s)	17
PvuII	CAGCTG	2 cut(s)	1883, 3070
RsaI	GTAC	6 cut(s)	1228, 2220, 2452, 2940, 3066, 3228
RsaNI	GTAC	6 cut(s)	1227, 2219, 2451, 2939, 3065, 3227
RseI	CAYNNNNRTG	4 cut(s)	987, 1893, 3138, 3374
SacI	GAGCTC	1 cut(s)	855
SapI	GCTCTTC	1 cut(s)	2649
SaqAI	TTAA	6 cut(s)	464, 1241, 1685, 1733, 2612, 3539
SchI	GAGTC	8 cut(s)	262, 296, 362, 798, 827, 2779, 2798, 3416
ScrFI	CCNGG	7 cut(s)	489, 986, 1030, 1224, 1578, 1614, 2105
SduI	GDGCHC	3 cut(s)	855, 2528, 3097
SfcI	CTRYAG	3 cut(s)	1943, 2792, 3183
Sfr274I	CTCGAG	1 cut(s)	2138
SfuI	TTCGAA	2 cut(s)	661, 2427
SinI	GGWCC	6 cut(s)	676, 902, 1217, 2594, 2962, 3008
SlaI	CTCGAG	1 cut(s)	2138
SmiMI	CAYNNNNRTG	4 cut(s)	987, 1893, 3138, 3374
SmlI	CTYRAG	4 cut(s)	811, 2138, 3000, 3461
SmoI	CTYRAG	4 cut(s)	811, 2138, 3000, 3461
SphI	GCATGC	1 cut(s)	2642
SseBI	AGGCCT	2 cut(s)	2068, 2873
SspI	AATATT	1 cut(s)	2421
SspMI	CTAG	7 cut(s)	1704, 1911, 2190, 2333, 2901, 3084, 3339
SstI	GAGCTC	1 cut(s)	855
StuI	AGGCCT	2 cut(s)	2068, 2873
StyD4I	CCNGG	7 cut(s)	487, 984, 1028, 1222, 1576, 1612, 2103
StyI	CCWWGG	5 cut(s)	739, 859, 908, 1196, 1272
TaaI	ACNGT	7 cut(s)	1158, 1353, 1652, 2274, 2489, 3079, 3231
TaiI	ACGT	4 cut(s)	243, 652, 2414, 3239
TaqI	TCGA	9 cut(s)	137, 661, 855, 2139, 2427, 2683, 2847, 2929, 3097
TaqII	GACCGA	1 cut(s)	418
TatI	WGTACW	1 cut(s)	3064
TauI	GCSGC	2 cut(s)	224, 252
TfiI	GAWTC	9 cut(s)	109, 162, 283, 331, 807, 824, 1505, 1826, 2546
Tru1I	TTAA	6 cut(s)	464, 1241, 1685, 1733, 2612, 3539
Tru9I	TTAA	6 cut(s)	464, 1241, 1685, 1733, 2612, 3539
TscAI	CASTG	2 cut(s)	2220, 2388
TseFI	GTSAC	6 cut(s)	584, 800, 980, 2952, 3079, 3207
Tsp45I	GTSAC	6 cut(s)	584, 800, 980, 2952, 3079, 3207
TspGWI	ACGGA	6 cut(s)	43, 265, 864, 1760, 1763, 2958
TspRI	CASTG	2 cut(s)	2220, 2388
Tth111I	GACNNNGTC	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	745
VpaK11BI	GGWCC	6 cut(s)	676, 902, 1217, 2594, 2962, 3008
VspI	ATTAAT	2 cut(s)	1241, 3539
XagI	CCTNNNNNAGG	1 cut(s)	1227
XapI	RAATTY	7 cut(s)	1017, 1455, 1595, 1808, 2339, 3560, 3580
XceI	RCATGY	2 cut(s)	2642, 2826
XhoI	CTCGAG	1 cut(s)	2138
XmiI	GTMKAC	2 cut(s)	1475, 1791
XmnI	GAANNNNTTC	1 cut(s)	2340
XspI	CTAG	7 cut(s)	1704, 1911, 2190, 2333, 2901, 3084, 3339
ZraI	GACGTC	1 cut(s)	2412
Zsp2I	ATGCAT	4 cut(s)	6, 298, 936, 1768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.