Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Forward (+)

1655564 .. 1658284

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2379 bp

ATGATGCGCGATGGCACCGCTACTCCGATTGCCTCCCTCAATACAGATTATTTATCAGACAGTTCCAATGACATGATGAAACCCTCTATCAAGAATCCGGGTGCATATCAAGATGCAGCATTATCACCTTACAAGCATGAACGACGTGAAGGATTGCGACCTCGTCGCTCAAACACAATTTCAACTCAAGATATAATGTTTGGATATGACAATGACGATCCTGGTAGTTCGGTTGACCAGGATATTGAATACAATGATGCGGATGATGGTCAGAAAGATGATGGAGATATTGGTGAGGGCCACGATGGAAGAAGACGCTATCATTTTCGAAATCGAAATCGTGCACAAGTCCAAGTCGGCAGGTTCTCTATTGATGAAGGAATGGGGCCAAAGGTCGGTAAGGATGTAAGAGAGTGTGGATCCTCAGTTCATAAGCGTCATCGAATTACAAGGACTGATGATTCTGCGCTCGACCAAGCTCAAACTGCTGGGGCCTGCAGGGCCAAGCTCAGAGGGAGGGACAGACGTACAACCTCTGCAGCTGATCTCTTTGTGAGTTATCATATCACCCCACCAAGGGGTGTCTTGTTATGTGGTCCTCCTGGTACTGGGAAGACATTAATTGCCAGAGCCTTAGCCTCTGCTGCATCCAAGGCTGGCCACAAAGTTAGTTTTTACATGAGGAAGGGTGCAGATGTGCTAAGCAAGTGGGTTGGCGAGGCTGAAAGACAATTGAAACTTCTTTTTGAGGAAGCACAGAGAAATCAACCTTCAATCATATTCTTTGATGAAATAGATGGCCTGGCTCCTGTAAGATCCAGCAGACAAGAGCAAACTCATAATTCTATTGTGTCTACATTGCTTGCTCTCATGGATGGTCTTGATTCCCGTGGACAAGTGGTTTTGCTCGGAGCAACCAACCGAGTTGATGCAGTTGATGGAGCTTTGCGGCGCCCCGGTAGATTTGATCGTGAATTCAACTTTCCTTTGCCTGGCTGTGAGGCCCGTGCTGAAATTTTAGACATTCACAGTCGGAAATGGAAGCATCCTCCTTCGAATGAGTTAAAATTGGAGCTTGCAGCTAGCTGTGTTGGATATTGTGGTGCTGATTTAAAGGCTCTTTGCACTGAAGCTGCCATTCGTGCTTTCCGTGAAAAATATCCTCAGGTCTACACGAGTGATGATAAATTTGTAATTGATGTTGATTCAGTAAGGGTTGAAAAGTATCACTTTGTTGAAGCCATGTCAACAATCACCCCAGCTGCTCACAGAGGTGCTGCTGTGCACTCTAGGCCATTGTCTTTAGTAGTTGCACCATGCCTGCAGAGGCATCTACAAAAAGCCATGAACTATATATCCGATATTTTCCCTCCGATTGCAGTGTCATCAGAATTGGCCAAGCTTTCCGTGCTGTCTGCTTGTGGCTCTGCCATTCCTCCTCTCGGCGCGGTTTTTCTGACTTTGCTACAAGAAGTTCCATCTGATTTACCTATATTACTACTTGCAACGTCATCTGAAGTTGATGCCATCACCTCTTCAATATTCTCTGAACGTTCTGTCTATCAGGTGGCCGGTACGCCATCTAATGAAGACAGATGTTTGTTTTTTGACCGTCTGATGGAAGCTGCCTTGTCAGTCTTGTTGGAGGGCAGGACTAAAAGGTCTCAGGCTGAACTTCCGAAGGCTCCAAAAGTGGCAAGCGGTCCAAAGGTGTCAGAGTTAAACGCCAAGGTAGAATCTGAGCAACGTGCTCTTGGCCTATTGCAGATGTGCCTCAGAGATGTTTGCAATCGAATTCTATCAGATGAGAGGTTTAGTGCTTTTCACCATCCCATCTTGGATGAGGAAGCTCCAAACTATCACTCAATTATCCAAAATCCTATGGATGTTGCGACCCTGCTGCAGCGTGTTGACTCTGGGCTGTATGTTTCATGTAAAGCATTCGTGGATGATGTTGATCTTATAGTTTCCAATGCAAAGGCTTATCATGGAGATGATTACAACGGGGCTAGGATTGTTAGTAGAGCTTATGAGCTTGGATACGTGGTATATGGAATGCTGCAGTCACAGATGGGCCCTGCACTGATTGCATATTTTGACGAGATTGCTGCTCAAGGTGGCCTAGAAGACGTAACTATTGTCACAAAGGCGAGTGCTCGACTTCGTGAGGGAAATCTGGATCCTAGCTACGAGGCACACAAGAGGCTTTTTGTGCAGCGGACCAAAACGTATGACATTCCACAGCTTGAGAGGCTTTACGCAAGAATTATGAAGGACATTTTCAACATCAAGGACGGAGACAAAAGCGATGTAGTGCCACCTATGCATTTAATTTTCAAGTATCTGTTGAAATTTGCAGAGGATGAAGCAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

792

Amino Acids

87.69

Weight (kDa)

6.32

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_16	PF13191	169 - 301	2.6e-06	AAA ATPase domain
IstB_IS21	PF01695	188 - 272	1.6e-07	IstB-like ATP binding protein
AAA	PF00004	195 - 330	1.8e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	358 - 394	1.1e-10	AAA+ lid domain
Bromodomain	PF00439	595 - 666	5.8e-15	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1660
Acc36I	ACCTGC	1 cut(s)	351
AccB1I	GGYRCC	2 cut(s)	14, 951
AccI	GTMKAC	2 cut(s)	854, 1170
AccII	CGCG	2 cut(s)	9, 1448
AciI	CCGC	6 cut(s)	18, 260, 949, 1448, 1701, 2218
AclI	AACGTT	1 cut(s)	1552
AclWI	GGATC	6 cut(s)	212, 414, 427, 810, 2174, 2187
AcoI	YGGCCR	3 cut(s)	658, 1395, 1569
AcsI	RAATTY	5 cut(s)	974, 1014, 1187, 1794, 2351
AcuI	CTGAAG	2 cut(s)	1149, 1536
AcyI	GRCGYC	1 cut(s)	952
AfaI	GTAC	3 cut(s)	529, 607, 1576
AfiI	CCNNNNNNNGG	8 cut(s)	395, 576, 577, 578, 608, 992, 1442, 1618
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	5 cut(s)	220, 237, 601, 801, 991
AleI	CACNNNNGTG	1 cut(s)	1272
AloI	GAACNNNNNNTCC	4 cut(s)	411, 443, 1340, 1372
Alw21I	GWGCWC	4 cut(s)	346, 1287, 1753, 2158
Alw26I	GTCTC	2 cut(s)	1668, 2292
Alw44I	GTGCAC	2 cut(s)	342, 1283
AlwI	GGATC	6 cut(s)	212, 414, 427, 810, 2174, 2187
ApaI	GGGCCC	1 cut(s)	2078
ApaLI	GTGCAC	2 cut(s)	342, 1283
ApoI	RAATTY	5 cut(s)	974, 1014, 1187, 1794, 2351
AseI	ATTAAT	1 cut(s)	620
AspLEI	GCGC	4 cut(s)	9, 469, 954, 1448
AsuC2I	CCSGG	2 cut(s)	99, 957
AsuHPI	GGTGA	6 cut(s)	117, 305, 559, 1246, 1522, 1817
AsuII	TTCGAA	2 cut(s)	328, 1055
AsuNHI	GCTAGC	1 cut(s)	1082
AvaII	GGWCC	3 cut(s)	596, 1703, 2220
AxyI	CCTNAGG	1 cut(s)	1164
BaeGI	GKGCMC	3 cut(s)	346, 1287, 2078
BalI	TGGCCA	2 cut(s)	660, 1397
BamHI	GGATCC	2 cut(s)	419, 2179
BanI	GGYRCC	2 cut(s)	14, 951
BanII	GRGCYC	1 cut(s)	2078
BauI	CACGAG	1 cut(s)	1174
BbsI	GAAGAC	4 cut(s)	319, 620, 1596, 2133
Bbv12I	GWGCWC	4 cut(s)	346, 1287, 1753, 2158
BcgI	CGANNNNNNTGC	4 cut(s)	1882, 1916, 2090, 2124
BciT130I	CCWGG	5 cut(s)	222, 239, 603, 803, 993
BciVI	GTATCC	1 cut(s)	2033
BcnI	CCSGG	2 cut(s)	99, 957
BcoDI	GTCTC	2 cut(s)	1668, 2292
BfaI	CTAG	5 cut(s)	1083, 1290, 2010, 2123, 2184
BfmI	CTRYAG	5 cut(s)	496, 537, 1322, 1901, 2060
BfoI	RGCGCY	1 cut(s)	955
BfuAI	ACCTGC	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	2033
BglI	GCCNNNNNGGC	1 cut(s)	500
BlpI	GCTNAGC	1 cut(s)	701
Bme1390I	CCNGG	7 cut(s)	99, 222, 239, 603, 803, 957, 993
Bme18I	GGWCC	3 cut(s)	596, 1703, 2220
BmgBI	CACGTC	1 cut(s)	146
BmiI	GGNNCC	9 cut(s)	16, 387, 421, 493, 807, 953, 1686, 2076, 2181
BmrFI	CCNGG	7 cut(s)	99, 222, 239, 603, 803, 957, 993
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	7 cut(s)	103, 247, 656, 919, 1054, 1339, 1513
BmtI	GCTAGC	1 cut(s)	1086
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	4 cut(s)	319, 620, 1596, 2133
Bpu10I	CCTNAGC	1 cut(s)	634
Bpu1102I	GCTNAGC	1 cut(s)	701
Bpu14I	TTCGAA	2 cut(s)	328, 1055
BpuEI	CTTGAG	3 cut(s)	171, 2097, 2267
BpuMI	CCSGG	2 cut(s)	99, 957
BsaAI	YACGTR	1 cut(s)	2044
BsaBI	GATNNNNATC	1 cut(s)	1956
BsaHI	GRCGYC	1 cut(s)	952
BsaI	GGTCTC	1 cut(s)	1668
BsaJI	CCNNGG	5 cut(s)	575, 651, 889, 955, 1728
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	8 cut(s)	395, 576, 577, 578, 608, 992, 1442, 1618
Bse118I	RCCGGY	1 cut(s)	1571
Bse1I	ACTGG	1 cut(s)	613
Bse21I	CCTNAGG	1 cut(s)	1164
Bse3DI	GCAATG	1 cut(s)	857
Bse8I	GATNNNNATC	1 cut(s)	1956
BseBI	CCWGG	5 cut(s)	222, 239, 603, 803, 993
BseDI	CCNNGG	5 cut(s)	575, 651, 889, 955, 1728
BseJI	GATNNNNATC	1 cut(s)	1956
BseLI	CCNNNNNNNGG	8 cut(s)	395, 576, 577, 578, 608, 992, 1442, 1618
BseMI	GCAATG	1 cut(s)	857
BseMII	CTCAG	6 cut(s)	438, 523, 1178, 1679, 1731, 1789
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	1 cut(s)	1428
BseSI	GKGCMC	3 cut(s)	346, 1287, 2078
BseYI	CCCAGC	2 cut(s)	488, 1258
BsgI	GTGCAG	3 cut(s)	711, 2064, 2234
Bsh1236I	CGCG	2 cut(s)	9, 1448
BshNI	GGYRCC	2 cut(s)	14, 951
BsiHKAI	GWGCWC	4 cut(s)	346, 1287, 1753, 2158
BsiSI	CCGG	3 cut(s)	98, 957, 1572
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	8 cut(s)	395, 576, 577, 578, 608, 992, 1442, 1618
BsmAI	GTCTC	2 cut(s)	1668, 2292
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	2 cut(s)	1940, 2061
Bso31I	GGTCTC	1 cut(s)	1668
Bsp119I	TTCGAA	2 cut(s)	328, 1055
Bsp120I	GGGCCC	1 cut(s)	2074
Bsp1286I	GDGCHC	5 cut(s)	346, 1287, 1753, 2078, 2158
Bsp143I	GATC	7 cut(s)	217, 419, 544, 815, 967, 1957, 2179
Bsp1720I	GCTNAGC	1 cut(s)	701
BspACI	CCGC	6 cut(s)	18, 260, 949, 1448, 1701, 2218
BspCNI	CTCAG	6 cut(s)	437, 522, 1177, 1678, 1732, 1788
BspFNI	CGCG	2 cut(s)	9, 1448
BspLI	GGNNCC	9 cut(s)	16, 387, 421, 493, 807, 953, 1686, 2076, 2181
BspMAI	CTGCAG	5 cut(s)	500, 541, 1326, 1905, 2064
BspMI	ACCTGC	1 cut(s)	351
BspOI	GCTAGC	1 cut(s)	1086
BspPI	GGATC	6 cut(s)	212, 414, 427, 810, 2174, 2187
BspT104I	TTCGAA	2 cut(s)	328, 1055
BspT107I	GGYRCC	2 cut(s)	14, 951
BspTNI	GGTCTC	1 cut(s)	1668
BsrDI	GCAATG	1 cut(s)	857
BsrFI	RCCGGY	1 cut(s)	1571
BsrI	ACTGG	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	1571
BssECI	CCNNGG	5 cut(s)	575, 651, 889, 955, 1728
BssMI	GATC	7 cut(s)	217, 419, 544, 815, 967, 1957, 2179
BssNI	GRCGYC	1 cut(s)	952
BssSI	CACGAG	1 cut(s)	1174
BssT1I	CCWWGG	3 cut(s)	575, 651, 1728
Bst2BI	CACGAG	1 cut(s)	1174
Bst2UI	CCWGG	5 cut(s)	222, 239, 603, 803, 993
Bst4CI	ACNGT	3 cut(s)	62, 1031, 1613
Bst6I	CTCTTC	1 cut(s)	1540
BstACI	GRCGYC	1 cut(s)	952
BstAPI	GCANNNNNTGC	1 cut(s)	2087
BstBAI	YACGTR	1 cut(s)	2044
BstBI	TTCGAA	2 cut(s)	328, 1055
BstC8I	GCNNGC	7 cut(s)	496, 658, 864, 1077, 1084, 1322, 1699
BstDEI	CTNAG	8 cut(s)	424, 509, 634, 701, 1164, 1665, 1740, 1775
BstDSI	CCRYGG	1 cut(s)	889
BstFNI	CGCG	2 cut(s)	9, 1448
BstH2I	RGCGCY	1 cut(s)	955
BstHHI	GCGC	4 cut(s)	9, 469, 954, 1448
BstKTI	GATC	7 cut(s)	220, 422, 547, 818, 970, 1960, 2182
BstMAI	GTCTC	2 cut(s)	1668, 2292
BstMBI	GATC	7 cut(s)	217, 419, 544, 815, 967, 1957, 2179
BstNI	CCWGG	5 cut(s)	222, 239, 603, 803, 993
BstSCI	CCNGG	7 cut(s)	97, 220, 237, 601, 801, 955, 991
BstSFI	CTRYAG	5 cut(s)	496, 537, 1322, 1901, 2060
BstSLI	GKGCMC	3 cut(s)	346, 1287, 2078
BstUI	CGCG	2 cut(s)	9, 1448
BstV2I	GAAGAC	4 cut(s)	319, 620, 1596, 2133
BstX2I	RGATCY	3 cut(s)	419, 815, 2179
BstYI	RGATCY	3 cut(s)	419, 815, 2179
Bsu36I	CCTNAGG	1 cut(s)	1164
BsuI	GTATCC	1 cut(s)	2033
BtgI	CCRYGG	1 cut(s)	889
BtgZI	GCGATG	2 cut(s)	24, 2322
BtrI	CACGTC	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	1386
BtsIMutI	CAGTG	3 cut(s)	1125, 1386, 2081
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	7 cut(s)	496, 658, 864, 1077, 1084, 1322, 1699
CfoI	GCGC	4 cut(s)	9, 469, 954, 1448
Cfr10I	RCCGGY	1 cut(s)	1571
CseI	GACGC	2 cut(s)	324, 425
Csp6I	GTAC	3 cut(s)	528, 606, 1575
CviAII	CATG	9 cut(s)	73, 137, 679, 871, 1243, 1317, 1345, 1932, 1988
CviQI	GTAC	3 cut(s)	528, 606, 1575
DdeI	CTNAG	8 cut(s)	424, 509, 634, 701, 1164, 1665, 1740, 1775
DinI	GGCGCC	1 cut(s)	953
DpnI	GATC	7 cut(s)	219, 421, 546, 817, 969, 1959, 2181
DpnII	GATC	7 cut(s)	217, 419, 544, 815, 967, 1957, 2179
DraI	TTTAAA	1 cut(s)	1113
DrdI	GACNNNNNNGTC	1 cut(s)	1660
DseDI	GACNNNNNNGTC	1 cut(s)	1660
EaeI	YGGCCR	3 cut(s)	658, 1395, 1569
Eam1104I	CTCTTC	1 cut(s)	1540
EarI	CTCTTC	1 cut(s)	1540
Eco130I	CCWWGG	3 cut(s)	575, 651, 1728
Eco24I	GRGCYC	1 cut(s)	2078
Eco31I	GGTCTC	1 cut(s)	1668
Eco47I	GGWCC	3 cut(s)	596, 1703, 2220
Eco57I	CTGAAG	2 cut(s)	1149, 1536
Eco81I	CCTNAGG	1 cut(s)	1164
EcoO109I	RGGNCCY	2 cut(s)	492, 2075
EcoRI	GAATTC	2 cut(s)	974, 1794
EcoRII	CCWGG	5 cut(s)	220, 237, 601, 801, 991
EcoT14I	CCWWGG	3 cut(s)	575, 651, 1728
EcoT22I	ATGCAT	1 cut(s)	2328
EcoT38I	GRGCYC	1 cut(s)	2078
EgeI	GGCGCC	1 cut(s)	953
EheI	GGCGCC	1 cut(s)	953
ErhI	CCWWGG	3 cut(s)	575, 651, 1728
FaeI	CATG	9 cut(s)	76, 140, 682, 874, 1246, 1320, 1348, 1935, 1991
FalI	AAGNNNNNCTT	2 cut(s)	1214, 1246
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	9 cut(s)	72, 136, 678, 870, 1242, 1316, 1344, 1931, 1987
FblI	GTMKAC	2 cut(s)	854, 1170
FriOI	GRGCYC	1 cut(s)	2078
FspBI	CTAG	5 cut(s)	1083, 1290, 2010, 2123, 2184
GlaI	GCGC	4 cut(s)	8, 468, 953, 1447
GsaI	CCCAGC	2 cut(s)	492, 1262
HaeII	RGCGCY	1 cut(s)	955
HapII	CCGG	3 cut(s)	98, 957, 1572
HgaI	GACGC	2 cut(s)	324, 425
HhaI	GCGC	4 cut(s)	9, 469, 954, 1448
Hin1I	GRCGYC	1 cut(s)	952
Hin1II	CATG	9 cut(s)	76, 140, 682, 874, 1246, 1320, 1348, 1935, 1991
Hin6I	GCGC	4 cut(s)	7, 467, 952, 1446
HinP1I	GCGC	4 cut(s)	7, 467, 952, 1446
HincII	GTYRAC	3 cut(s)	235, 1248, 1912
HindII	GTYRAC	3 cut(s)	235, 1248, 1912
HindIII	AAGCTT	1 cut(s)	1400
HinfI	GANTC	6 cut(s)	94, 461, 884, 1205, 1736, 1913
HpaII	CCGG	3 cut(s)	98, 957, 1572
HphI	GGTGA	6 cut(s)	117, 305, 559, 1246, 1522, 1817
Hpy166II	GTNNAC	8 cut(s)	235, 344, 855, 893, 1171, 1248, 1285, 1912
Hpy188III	TCNNGA	7 cut(s)	91, 110, 188, 881, 971, 2165, 2177
Hpy8I	GTNNAC	8 cut(s)	235, 344, 855, 893, 1171, 1248, 1285, 1912
Hpy99I	CGWCG	2 cut(s)	147, 168
HpyAV	CCTTC	7 cut(s)	143, 371, 679, 780, 1062, 1675, 2266
HpyCH4III	ACNGT	3 cut(s)	62, 1031, 1613
HpyCH4IV	ACGT	8 cut(s)	145, 526, 1508, 1552, 1747, 2043, 2130, 2228
HpyF3I	CTNAG	8 cut(s)	424, 509, 634, 701, 1164, 1665, 1740, 1775
HpySE526I	ACGT	8 cut(s)	145, 526, 1508, 1552, 1747, 2043, 2130, 2228
Hsp92I	GRCGYC	1 cut(s)	952
Hsp92II	CATG	9 cut(s)	76, 140, 682, 874, 1246, 1320, 1348, 1935, 1991
HspAI	GCGC	4 cut(s)	7, 467, 952, 1446
KasI	GGCGCC	1 cut(s)	951
Kzo9I	GATC	7 cut(s)	217, 419, 544, 815, 967, 1957, 2179
LmnI	GCTCC	6 cut(s)	811, 911, 941, 1072, 1690, 1855
LweI	GCATC	7 cut(s)	103, 247, 656, 919, 1054, 1339, 1513
MaeI	CTAG	5 cut(s)	1083, 1290, 2010, 2123, 2184
MaeII	ACGT	8 cut(s)	145, 526, 1508, 1552, 1747, 2043, 2130, 2228
MaeIII	GTNAC	3 cut(s)	2064, 2131, 2140
MalI	GATC	7 cut(s)	219, 421, 546, 817, 969, 1959, 2181
MboI	GATC	7 cut(s)	217, 419, 544, 815, 967, 1957, 2179
MboII	GAAGA	6 cut(s)	321, 324, 625, 1527, 1601, 2138
MfeI	CAATTG	1 cut(s)	731
MflI	RGATCY	3 cut(s)	419, 815, 2179
MhlI	GDGCHC	5 cut(s)	346, 1287, 1753, 2078, 2158
MlsI	TGGCCA	2 cut(s)	660, 1397
MluNI	TGGCCA	2 cut(s)	660, 1397
Mly113I	GGCGCC	1 cut(s)	952
MlyI	GAGTC	1 cut(s)	1907
MmeI	TCCRAC	3 cut(s)	1013, 1072, 1623
Mox20I	TGGCCA	2 cut(s)	660, 1397
Mph1103I	ATGCAT	1 cut(s)	2328
MscI	TGGCCA	2 cut(s)	660, 1397
MseI	TTAA	5 cut(s)	620, 1064, 1112, 1721, 2330
MslI	CAYNNNNRTG	2 cut(s)	1272, 1992
Msp20I	TGGCCA	2 cut(s)	660, 1397
MspA1I	CMGCKG	3 cut(s)	542, 1262, 2218
MspI	CCGG	3 cut(s)	98, 957, 1572
MspR9I	CCNGG	7 cut(s)	99, 222, 239, 603, 803, 957, 993
MunI	CAATTG	1 cut(s)	731
Mva1269I	GAATGC	2 cut(s)	1940, 2061
MvaI	CCWGG	5 cut(s)	222, 239, 603, 803, 993
MvnI	CGCG	2 cut(s)	9, 1448
NarI	GGCGCC	1 cut(s)	952
NciI	CCSGG	2 cut(s)	99, 957
NdeII	GATC	7 cut(s)	217, 419, 544, 815, 967, 1957, 2179
NheI	GCTAGC	1 cut(s)	1082
NlaIII	CATG	9 cut(s)	76, 140, 682, 874, 1246, 1320, 1348, 1935, 1991
NlaIV	GGNNCC	9 cut(s)	16, 387, 421, 493, 807, 953, 1686, 2076, 2181
NmeAIII	GCCGAG	1 cut(s)	1422
NmuCI	GTSAC	2 cut(s)	2064, 2140
NsiI	ATGCAT	1 cut(s)	2328
NspV	TTCGAA	2 cut(s)	328, 1055
OliI	CACNNNNGTG	1 cut(s)	1272
PcsI	WCGNNNNNNNCGW	1 cut(s)	1147
PctI	GAATGC	2 cut(s)	1940, 2061
PfeI	GAWTC	5 cut(s)	94, 461, 884, 1205, 1736
PflFI	GACNNNGTC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	1907
PluTI	GGCGCC	1 cut(s)	955
PpsI	GAGTC	1 cut(s)	1907
Ppu21I	YACGTR	1 cut(s)	2044
PshBI	ATTAAT	1 cut(s)	620
Psp1406I	AACGTT	1 cut(s)	1552
Psp6I	CCWGG	5 cut(s)	220, 237, 601, 801, 991
PspFI	CCCAGC	2 cut(s)	488, 1258
PspGI	CCWGG	5 cut(s)	220, 237, 601, 801, 991
PspN4I	GGNNCC	9 cut(s)	16, 387, 421, 493, 807, 953, 1686, 2076, 2181
PspOMI	GGGCCC	1 cut(s)	2074
PstI	CTGCAG	5 cut(s)	500, 541, 1326, 1905, 2064
PsuI	RGATCY	3 cut(s)	419, 815, 2179
PsyI	GACNNNGTC	1 cut(s)	162
PvuII	CAGCTG	2 cut(s)	542, 1262
RsaI	GTAC	3 cut(s)	529, 607, 1576
RsaNI	GTAC	3 cut(s)	528, 606, 1575
RseI	CAYNNNNRTG	2 cut(s)	1272, 1992
SaqAI	TTAA	5 cut(s)	620, 1064, 1112, 1721, 2330
Sau3AI	GATC	7 cut(s)	217, 419, 544, 815, 967, 1957, 2179
SbfI	CCTGCAGG	1 cut(s)	500
SchI	GAGTC	1 cut(s)	1907
ScrFI	CCNGG	7 cut(s)	99, 222, 239, 603, 803, 957, 993
SdaI	CCTGCAGG	1 cut(s)	500
SduI	GDGCHC	5 cut(s)	346, 1287, 1753, 2078, 2158
SfaNI	GCATC	7 cut(s)	103, 247, 656, 919, 1054, 1339, 1513
SfcI	CTRYAG	5 cut(s)	496, 537, 1322, 1901, 2060
SfiI	GGCCNNNNNGGCC	1 cut(s)	500
SfoI	GGCGCC	1 cut(s)	953
SfuI	TTCGAA	2 cut(s)	328, 1055
SinI	GGWCC	3 cut(s)	596, 1703, 2220
SmiMI	CAYNNNNRTG	2 cut(s)	1272, 1992
SmlI	CTYRAG	3 cut(s)	186, 2112, 2246
SmoI	CTYRAG	3 cut(s)	186, 2112, 2246
Sse8387I	CCTGCAGG	1 cut(s)	500
SsiI	CCGC	6 cut(s)	18, 260, 949, 1448, 1701, 2218
SspDI	GGCGCC	1 cut(s)	951
SspI	AATATT	1 cut(s)	1542
SspMI	CTAG	5 cut(s)	1083, 1290, 2010, 2123, 2184
StyD4I	CCNGG	7 cut(s)	97, 220, 237, 601, 801, 955, 991
StyI	CCWWGG	3 cut(s)	575, 651, 1728
TaaI	ACNGT	3 cut(s)	62, 1031, 1613
TaiI	ACGT	8 cut(s)	148, 529, 1511, 1555, 1750, 2046, 2133, 2231
TaqI	TCGA	7 cut(s)	328, 334, 442, 471, 1055, 1792, 2158
TauI	GCSGC	1 cut(s)	952
TfiI	GAWTC	5 cut(s)	94, 461, 884, 1205, 1736
Tru1I	TTAA	5 cut(s)	620, 1064, 1112, 1721, 2330
Tru9I	TTAA	5 cut(s)	620, 1064, 1112, 1721, 2330
TscAI	CASTG	3 cut(s)	1132, 1386, 2088
TseFI	GTSAC	2 cut(s)	2064, 2140
Tsp45I	GTSAC	2 cut(s)	2064, 2140
TspGWI	ACGGA	3 cut(s)	1139, 1396, 2310
TspRI	CASTG	3 cut(s)	1132, 1386, 2088
Tth111I	GACNNNGTC	1 cut(s)	162
VneI	GTGCAC	2 cut(s)	342, 1283
VpaK11BI	GGWCC	3 cut(s)	596, 1703, 2220
VspI	ATTAAT	1 cut(s)	620
XapI	RAATTY	5 cut(s)	974, 1014, 1187, 1794, 2351
XmiI	GTMKAC	2 cut(s)	854, 1170
XspI	CTAG	5 cut(s)	1083, 1290, 2010, 2123, 2184
Zsp2I	ATGCAT	1 cut(s)	2328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.