Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Reverse (-)

3091768 .. 3094742

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGCATAAGCGATCTGGTGGGACGGCCCCGGAGCCGGTGCGGACGAGCGGAAGGCTGAAGGGTCGAACGACGCCGTACGGGCGGGGCATATACTACTACACCACAAGCACTTCCAGGAAGATCATCCAAAAGCGGAGAAACCGGAAGAACAAGACCAAGACCCGAACCGCCGCTTCCCATATCGCTAAGATAATGCGCCATGGCGGCACTCCTCGTCCCCAAAGATCCACCACTCCTCTCCCCTCCAGCAACCTCAATGCAGATGCATCCAACCTCCGGCGCTCCACAAGAAAGAGAACGCTGTCAATAAGGAATCGGGGTGACTACATAACAGACGACAGTTCTGGAAGTGAGCAGGATGAAGATATAATGAAAGTCAGGGGTAAATCTATCAAGAATAAGGTTGATAATAGTTCGTTTAAAGATGAGTTGCCATCTCCCAAGCACAAAAAGATGGTGGAGACTAGACATACACCTCGTCGTGAAGGATTGCGCCCTCGACGGTTCAATTCTGCAAGAGAACAATTGCATTTGCAGTTTGATGATGAGCCGGGTACTTCAGATGAGAAGATTGATCAAGATGAAACCGAAAATGGGAATGACATTGAATACAATGATGCAGATGATGCTCAAAATGAAGCTGATGGTGAGGATGTTGGTGATGGTGATGGTGATGGTGATGGTGAGGGTGATGATGATGGTGATGGTGATGGTGATGGTGATGGTGATGAAGACGGTGATGATGAGGAGGGTGATGAAGAACAAGATGGACGAAGACGATATGATCTTCGAAATCGTGAAGATGTCCGTAAGCTGAGACCAAGATCTCCTCGTAGAGTATTGCGTCAAGGAATGGGGACAAAGGTCGGTAGGGATGTGAGAAAGGGTGGATCACGAGTTCATAAGCGCCATCGTATGACAAGGACAGATGATTCTGATGACTCCCTTCTTGTCGACGAGCTAGACCAAGGACCTGCAATTCCCTGGGCCCGAGGTGGGAGCAGATCTGGACCACCTTGGCTCTTTGGGGGATTAGACATGCATGGAACAACAGCATGGGGATTGAATGTTGCTGCTTCAGGTTGGGGTCATCAGGGTGATGCTTTTGCCACCTTAACATCTGGAATTCAAACTGCTGGGCCAAGTTCAAAGGGAGGGGCAGACATACAACCTTTGCAGGTTGATGATAGTGTGAGTTTTGATGATATAGGTGGGCTTTCTGAATATATTGATGCTTTGAAGGAAATGGTTTTCTTTCCTCTGTTATATCCAGATTTCTTTGCAAGTTATCATATCACCCCACCAAGGGGGGTTTTGTTATGTGGTCCTCCTGGGACTGGGAAAACATTAATTGCCAGAGCGTTAGCCTGTGCTGCATCAAAGGCTGGCCAGAAGGTCAGCTTTTACATGCGGAAGGGTGCAGATGTGCTAAGTAAATGGGTGGGTGAGGCTGAAAGACAATTAAAACTACTTTTTGAGGAAGCACAAAGAAATCAACCTTCGATCATATTCTTTGATGAAATAGACGGACTTGCTCCTGTAAGGTCCAGCAAACAAGAGCAAATTCACAATTCTATTGTCTCAACTTTGCTTGCTTTGATGGATGGTCTTGATTCCCGTGGCCAAGTCGTTTTGATTGGAGCAACCAACCGGATCGATGCAATTGATGGAGCTCTGCGGCGCCCTGGTAGATTTGACCGCGAATTCAACTTTCCTTTGCCTGGCTGTGAAGCACGTGCTGAAATTTTAGACATTCATACTCGGAAATGGAGGAATCCTCCTTCAAAGGAGCTAAAATTGGAACTTGCAGCTAGTTGTGTTGGATATTGTGGTGCTGATTTAAAGGCTCTTTGCACTGAAGCTGCCATTCGTGCTTTTCGAGAAAAATATCCTCAAGTTTACACAAGTGATGATAAGTTTGTAATCGATGTTGATTCAGTAAACGTTGAGAAGTATCACTTTGTTGAAGCCATGTCAACAATTACTCCAGCTGCTCACAGAGGTGCTGTTGTGTACTCCAGGCCATTGTCTTCAGTAGTAGCACCATGCCTGCAAAGGCATCTCCAAAAAGCCATGAAGTATATATCCGATATTTTCCCACCTCTTGCAGTTTCATCACAGTTGACCAAGCTTTCCATGCTCTCCTCTGGCTCTGCAATTCCTCTTGTCTATAGGCCTCGGCTTCTGCTATGTGGTGGTGAAGGTTCTGGCCTGGATCGATCTTGGGCCTGCTGTTTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

748

Amino Acids

82.44

Weight (kDa)

7.25

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	982, 1168
AccB1I	GGYRCC	1 cut(s)	1680
AccBSI	CCGCTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	954
AccII	CGCG	1 cut(s)	1701
AclI	AACGTT	1 cut(s)	1944
AclWI	GGATC	4 cut(s)	219, 898, 1661, 2223
AcoI	YGGCCR	2 cut(s)	1387, 1621
AcsI	RAATTY	4 cut(s)	1125, 1563, 1703, 1743
AcuI	CTGAAG	5 cut(s)	77, 543, 1062, 1878, 2016
AcvI	CACGTG	1 cut(s)	1736
AcyI	GRCGYC	2 cut(s)	71, 1681
AfaI	GTAC	3 cut(s)	77, 556, 2015
AfiI	CCNNNNNNNGG	9 cut(s)	34, 276, 594, 996, 1305, 1306, 1307, 1337, 1721
AgsI	TTSAA	9 cut(s)	508, 608, 1066, 1130, 1149, 1240, 1708, 1785, 1967
AjnI	CCWGG	7 cut(s)	113, 983, 1330, 1684, 1720, 2018, 2211
AleI	CACNNNNGTG	1 cut(s)	2001
AloI	GAACNNNNNNTCC	2 cut(s)	882, 914
Alw21I	GWGCWC	1 cut(s)	1675
Alw26I	GTCTC	3 cut(s)	455, 811, 1585
AlwI	GGATC	4 cut(s)	219, 898, 1661, 2223
Ama87I	CYCGRG	1 cut(s)	990
AoxI	GGCC	9 cut(s)	24, 987, 1139, 1387, 1621, 2021, 2174, 2209, 2226
ApaI	GGGCCC	1 cut(s)	991
ApeKI	GCWGC	5 cut(s)	1073, 1373, 1808, 1862, 1991
ApoI	RAATTY	4 cut(s)	1125, 1563, 1703, 1743
AseI	ATTAAT	1 cut(s)	1349
AspLEI	GCGC	5 cut(s)	198, 282, 495, 909, 1683
AspS9I	GGNCC	9 cut(s)	25, 971, 987, 988, 1010, 1139, 1325, 1545, 2226
AsuC2I	CCSGG	2 cut(s)	29, 552
AsuII	TTCGAA	1 cut(s)	790
AvaI	CYCGRG	1 cut(s)	990
AvaII	GGWCC	4 cut(s)	971, 1010, 1325, 1545
BaeGI	GKGCMC	1 cut(s)	991
BalI	TGGCCA	2 cut(s)	1389, 1623
BanI	GGYRCC	1 cut(s)	1680
BanII	GRGCYC	2 cut(s)	991, 1675
BauI	CACGAG	1 cut(s)	894
BbrPI	CACGTG	1 cut(s)	1736
BbsI	GAAGAC	3 cut(s)	738, 781, 2022
Bbv12I	GWGCWC	1 cut(s)	1675
BbvI	GCAGC	5 cut(s)	1060, 1360, 1820, 1849, 1978
BceAI	ACGGC	2 cut(s)	39, 58
BciT130I	CCWGG	7 cut(s)	115, 985, 1332, 1686, 1722, 2020, 2213
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	2 cut(s)	29, 552
BcoDI	GTCTC	3 cut(s)	455, 811, 1585
BfaI	CTAG	3 cut(s)	465, 962, 1812
BfmI	CTRYAG	1 cut(s)	2170
BfoI	RGCGCY	3 cut(s)	283, 910, 1684
BfuAI	ACCTGC	2 cut(s)	982, 1168
BglI	GCCNNNNNGGC	2 cut(s)	79, 204
BglII	AGATCT	2 cut(s)	824, 1004
BisI	GCNGC	8 cut(s)	171, 205, 1074, 1374, 1679, 1809, 1863, 1992
BlsI	GCNGC	8 cut(s)	172, 206, 1075, 1375, 1680, 1810, 1864, 1993
Bme1390I	CCNGG	9 cut(s)	29, 115, 552, 985, 1332, 1686, 1722, 2020, 2213
Bme18I	GGWCC	4 cut(s)	971, 1010, 1325, 1545
BmeT110I	CYCGRG	1 cut(s)	990
BmgT120I	GGNCC	9 cut(s)	25, 971, 987, 988, 1010, 1139, 1325, 1545, 2226
BmiI	GGNNCC	4 cut(s)	27, 33, 989, 1682
BmrFI	CCNGG	9 cut(s)	29, 115, 552, 985, 1332, 1686, 1722, 2020, 2213
BmrI	ACTGGG	1 cut(s)	1347
BmsI	GCATC	9 cut(s)	253, 275, 607, 616, 1090, 1222, 1385, 1648, 2068
BmuI	ACTGGG	1 cut(s)	1347
BoxI	GACNNNNGTC	1 cut(s)	863
BpiI	GAAGAC	3 cut(s)	738, 781, 2022
BplI	GAGNNNNNCTC	2 cut(s)	1762, 1794
BpmI	CTGGAG	3 cut(s)	229, 1971, 2002
Bpu14I	TTCGAA	1 cut(s)	790
BpuEI	CTTGAG	1 cut(s)	1878
BpuMI	CCSGG	2 cut(s)	29, 552
Bsa29I	ATCGAT	3 cut(s)	1656, 1926, 2218
BsaAI	YACGTR	1 cut(s)	1736
BsaHI	GRCGYC	2 cut(s)	71, 1681
BsaI	GGTCTC	1 cut(s)	811
BsaWI	WCCGGW	2 cut(s)	141, 1650
BsaXI	ACNNNNNCTCC	2 cut(s)	1969, 1999
Bsc4I	CCNNNNNNNGG	9 cut(s)	34, 276, 594, 996, 1305, 1306, 1307, 1337, 1721
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	1342
BseBI	CCWGG	7 cut(s)	115, 985, 1332, 1686, 1722, 2020, 2213
BseCI	ATCGAT	3 cut(s)	1656, 1926, 2218
BseGI	GGATG	6 cut(s)	123, 266, 364, 658, 880, 1609
BseLI	CCNNNNNNNGG	9 cut(s)	34, 276, 594, 996, 1305, 1306, 1307, 1337, 1721
BseMII	CTCAG	1 cut(s)	806
BseNI	ACTGG	1 cut(s)	1342
BseRI	GAGGAG	5 cut(s)	201, 225, 761, 819, 2134
BseSI	GKGCMC	1 cut(s)	991
BseXI	GCAGC	5 cut(s)	1060, 1360, 1820, 1849, 1978
BseYI	CCCAGC	1 cut(s)	1136
BsgI	GTGCAG	1 cut(s)	1440
Bsh1236I	CGCG	1 cut(s)	1701
BshFI	GGCC	9 cut(s)	26, 989, 1141, 1389, 1623, 2023, 2176, 2211, 2228
BshNI	GGYRCC	1 cut(s)	1680
BshVI	ATCGAT	3 cut(s)	1656, 1926, 2218
BsiHKAI	GWGCWC	1 cut(s)	1675
BsiHKCI	CYCGRG	1 cut(s)	990
BsiSI	CCGG	6 cut(s)	29, 35, 142, 277, 551, 1651
BsiWI	CGTACG	1 cut(s)	75
BslFI	GGGAC	4 cut(s)	34, 201, 871, 1348
BslI	CCNNNNNNNGG	9 cut(s)	34, 276, 594, 996, 1305, 1306, 1307, 1337, 1721
BsmAI	GTCTC	3 cut(s)	455, 811, 1585
BsmFI	GGGAC	4 cut(s)	34, 201, 871, 1348
BsnI	GGCC	9 cut(s)	26, 989, 1141, 1389, 1623, 2023, 2176, 2211, 2228
Bso31I	GGTCTC	1 cut(s)	811
BsoBI	CYCGRG	1 cut(s)	990
Bsp119I	TTCGAA	1 cut(s)	790
Bsp120I	GGGCCC	1 cut(s)	987
Bsp1286I	GDGCHC	2 cut(s)	991, 1675
Bsp19I	CCATGG	1 cut(s)	199
BspANI	GGCC	9 cut(s)	26, 989, 1141, 1389, 1623, 2023, 2176, 2211, 2228
BspCNI	CTCAG	1 cut(s)	807
BspDI	ATCGAT	3 cut(s)	1656, 1926, 2218
BspFNI	CGCG	1 cut(s)	1701
BspLI	GGNNCC	4 cut(s)	27, 33, 989, 1682
BspMI	ACCTGC	2 cut(s)	982, 1168
BspPI	GGATC	4 cut(s)	219, 898, 1661, 2223
BspT104I	TTCGAA	1 cut(s)	790
BspT107I	GGYRCC	1 cut(s)	1680
BspTNI	GGTCTC	1 cut(s)	811
BsrBI	CCGCTC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	1342
BssAI	RCCGGY	1 cut(s)	34
BssNI	GRCGYC	2 cut(s)	71, 1681
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	4 cut(s)	199, 967, 1016, 1304
Bst2BI	CACGAG	1 cut(s)	894
Bst2UI	CCWGG	7 cut(s)	115, 985, 1332, 1686, 1722, 2020, 2213
Bst4CI	ACNGT	4 cut(s)	341, 504, 737, 2121
BstACI	GRCGYC	2 cut(s)	71, 1681
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstBAI	YACGTR	1 cut(s)	1736
BstBI	TTCGAA	1 cut(s)	790
BstC8I	GCNNGC	4 cut(s)	1387, 1593, 2051, 2230
BstDEI	CTNAG	3 cut(s)	186, 815, 1430
BstDSI	CCRYGG	2 cut(s)	199, 1618
BstF5I	GGATG	6 cut(s)	123, 266, 364, 658, 880, 1609
BstFNI	CGCG	1 cut(s)	1701
BstH2I	RGCGCY	3 cut(s)	283, 910, 1684
BstHHI	GCGC	5 cut(s)	198, 282, 495, 909, 1683
BstMAI	GTCTC	3 cut(s)	455, 811, 1585
BstMWI	GCNNNNNNNGC	7 cut(s)	79, 204, 626, 1373, 1382, 1871, 2137
BstNI	CCWGG	7 cut(s)	115, 985, 1332, 1686, 1722, 2020, 2213
BstNSI	RCATGY	2 cut(s)	1042, 1411
BstPAI	GACNNNNGTC	1 cut(s)	863
BstSCI	CCNGG	9 cut(s)	27, 113, 550, 983, 1330, 1684, 1720, 2018, 2211
BstSFI	CTRYAG	1 cut(s)	2170
BstSLI	GKGCMC	1 cut(s)	991
BstUI	CGCG	1 cut(s)	1701
BstV1I	GCAGC	5 cut(s)	1060, 1360, 1820, 1849, 1978
BstV2I	GAAGAC	3 cut(s)	738, 781, 2022
BstX2I	RGATCY	3 cut(s)	224, 824, 1004
BstYI	RGATCY	3 cut(s)	224, 824, 1004
Bsu15I	ATCGAT	3 cut(s)	1656, 1926, 2218
BsuRI	GGCC	9 cut(s)	26, 989, 1141, 1389, 1623, 2023, 2176, 2211, 2228
BsuTUI	ATCGAT	3 cut(s)	1656, 1926, 2218
BtgI	CCRYGG	2 cut(s)	199, 1618
BtsCI	GGATG	6 cut(s)	123, 266, 364, 658, 880, 1609
BtsIMutI	CAGTG	1 cut(s)	1854
BveI	ACCTGC	2 cut(s)	982, 1168
Cac8I	GCNNGC	4 cut(s)	1387, 1593, 2051, 2230
CfoI	GCGC	5 cut(s)	198, 282, 495, 909, 1683
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	9 cut(s)	25, 971, 987, 988, 1010, 1139, 1325, 1545, 2226
ClaI	ATCGAT	3 cut(s)	1656, 1926, 2218
CseI	GACGC	2 cut(s)	79, 833
Csp6I	GTAC	3 cut(s)	76, 555, 2014
CviQI	GTAC	3 cut(s)	76, 555, 2014
DdeI	CTNAG	3 cut(s)	186, 815, 1430
DinI	GGCGCC	1 cut(s)	1682
DraI	TTTAAA	2 cut(s)	421, 1842
EaeI	YGGCCR	2 cut(s)	1387, 1621
Ecl136II	GAGCTC	1 cut(s)	1673
Eco130I	CCWWGG	4 cut(s)	199, 967, 1016, 1304
Eco147I	AGGCCT	1 cut(s)	2176
Eco24I	GRGCYC	2 cut(s)	991, 1675
Eco31I	GGTCTC	1 cut(s)	811
Eco47I	GGWCC	4 cut(s)	971, 1010, 1325, 1545
Eco53kI	GAGCTC	1 cut(s)	1673
Eco57I	CTGAAG	5 cut(s)	77, 543, 1062, 1878, 2016
Eco72I	CACGTG	1 cut(s)	1736
Eco88I	CYCGRG	1 cut(s)	990
EcoICRI	GAGCTC	1 cut(s)	1673
EcoO109I	RGGNCCY	1 cut(s)	971
EcoRI	GAATTC	2 cut(s)	1125, 1703
EcoRII	CCWGG	7 cut(s)	113, 983, 1330, 1684, 1720, 2018, 2211
EcoT14I	CCWWGG	4 cut(s)	199, 967, 1016, 1304
EcoT22I	ATGCAT	3 cut(s)	6, 268, 1044
EcoT38I	GRGCYC	2 cut(s)	991, 1675
EgeI	GGCGCC	1 cut(s)	1682
EheI	GGCGCC	1 cut(s)	1682
ErhI	CCWWGG	4 cut(s)	199, 967, 1016, 1304
FalI	AAGNNNNNCTT	4 cut(s)	1385, 1417, 1943, 1975
FaqI	GGGAC	4 cut(s)	34, 201, 871, 1348
FauI	CCCGC	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	954
Fnu4HI	GCNGC	8 cut(s)	171, 205, 1074, 1374, 1679, 1809, 1863, 1992
FokI	GGATG	6 cut(s)	110, 253, 371, 665, 887, 1616
FriOI	GRGCYC	2 cut(s)	991, 1675
Fsp4HI	GCNGC	8 cut(s)	171, 205, 1074, 1374, 1679, 1809, 1863, 1992
FspBI	CTAG	3 cut(s)	465, 962, 1812
GlaI	GCGC	5 cut(s)	197, 281, 494, 908, 1682
GluI	GCNGC	8 cut(s)	171, 205, 1074, 1374, 1679, 1809, 1863, 1992
GsaI	CCCAGC	1 cut(s)	1140
GsuI	CTGGAG	3 cut(s)	229, 1971, 2002
HaeII	RGCGCY	3 cut(s)	283, 910, 1684
HaeIII	GGCC	9 cut(s)	26, 989, 1141, 1389, 1623, 2023, 2176, 2211, 2228
HapII	CCGG	6 cut(s)	29, 35, 142, 277, 551, 1651
HgaI	GACGC	2 cut(s)	79, 833
HhaI	GCGC	5 cut(s)	198, 282, 495, 909, 1683
Hin1I	GRCGYC	2 cut(s)	71, 1681
Hin6I	GCGC	5 cut(s)	196, 280, 493, 907, 1681
HinP1I	GCGC	5 cut(s)	196, 280, 493, 907, 1681
HincII	GTYRAC	3 cut(s)	955, 1977, 2124
HindII	GTYRAC	3 cut(s)	955, 1977, 2124
HindIII	AAGCTT	1 cut(s)	2129
HinfI	GANTC	6 cut(s)	313, 932, 941, 1613, 1774, 1934
HpaII	CCGG	6 cut(s)	29, 35, 142, 277, 551, 1651
Hpy166II	GTNNAC	6 cut(s)	955, 1900, 1942, 1977, 2014, 2124
Hpy188I	TCNGA	5 cut(s)	562, 937, 1222, 1764, 2089
Hpy8I	GTNNAC	6 cut(s)	955, 1900, 1942, 1977, 2014, 2124
Hpy99I	CGWCG	4 cut(s)	73, 483, 504, 959
HpyCH4III	ACNGT	4 cut(s)	341, 504, 737, 2121
HpyCH4IV	ACGT	2 cut(s)	1735, 1944
HpyF10VI	GCNNNNNNNGC	7 cut(s)	79, 204, 626, 1373, 1382, 1871, 2137
HpyF3I	CTNAG	3 cut(s)	186, 815, 1430
HpySE526I	ACGT	2 cut(s)	1735, 1944
Hsp92I	GRCGYC	2 cut(s)	71, 1681
HspAI	GCGC	5 cut(s)	196, 280, 493, 907, 1681
KasI	GGCGCC	1 cut(s)	1680
Ksp22I	TGATCA	1 cut(s)	574
LmnI	GCTCC	7 cut(s)	31, 287, 999, 1540, 1640, 1670, 1789
Lsp1109I	GCAGC	5 cut(s)	1060, 1360, 1820, 1849, 1978
LweI	GCATC	9 cut(s)	253, 275, 607, 616, 1090, 1222, 1385, 1648, 2068
MaeI	CTAG	3 cut(s)	465, 962, 1812
MaeII	ACGT	2 cut(s)	1735, 1944
MaeIII	GTNAC	1 cut(s)	320
MbiI	CCGCTC	1 cut(s)	48
MfeI	CAATTG	2 cut(s)	524, 1662
MflI	RGATCY	3 cut(s)	224, 824, 1004
MhlI	GDGCHC	2 cut(s)	991, 1675
MlsI	TGGCCA	2 cut(s)	1389, 1623
MluNI	TGGCCA	2 cut(s)	1389, 1623
Mly113I	GGCGCC	1 cut(s)	1681
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	2 cut(s)	294, 1801
Mox20I	TGGCCA	2 cut(s)	1389, 1623
Mph1103I	ATGCAT	3 cut(s)	6, 268, 1044
MscI	TGGCCA	2 cut(s)	1389, 1623
MseI	TTAA	5 cut(s)	420, 1115, 1349, 1463, 1841
MslI	CAYNNNNRTG	2 cut(s)	1095, 2001
Msp20I	TGGCCA	2 cut(s)	1389, 1623
MspA1I	CMGCKG	1 cut(s)	1991
MspI	CCGG	6 cut(s)	29, 35, 142, 277, 551, 1651
MspR9I	CCNGG	9 cut(s)	29, 115, 552, 985, 1332, 1686, 1722, 2020, 2213
MunI	CAATTG	2 cut(s)	524, 1662
MvaI	CCWGG	7 cut(s)	115, 985, 1332, 1686, 1722, 2020, 2213
MvnI	CGCG	1 cut(s)	1701
MwoI	GCNNNNNNNGC	7 cut(s)	79, 204, 626, 1373, 1382, 1871, 2137
NarI	GGCGCC	1 cut(s)	1681
NciI	CCSGG	2 cut(s)	29, 552
NcoI	CCATGG	1 cut(s)	199
NlaIV	GGNNCC	4 cut(s)	27, 33, 989, 1682
NmeAIII	GCCGAG	1 cut(s)	2158
NmuCI	GTSAC	1 cut(s)	320
NsiI	ATGCAT	3 cut(s)	6, 268, 1044
NspI	RCATGY	2 cut(s)	1042, 1411
NspV	TTCGAA	1 cut(s)	790
OliI	CACNNNNGTG	1 cut(s)	2001
PasI	CCCWGGG	1 cut(s)	984
PceI	AGGCCT	1 cut(s)	2176
PcsI	WCGNNNNNNNCGW	1 cut(s)	1876
PfeI	GAWTC	5 cut(s)	313, 932, 1613, 1774, 1934
Pfl23II	CGTACG	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	8 cut(s)	172, 206, 1075, 1375, 1680, 1810, 1864, 1993
PleI	GAGTC	1 cut(s)	935
PluTI	GGCGCC	1 cut(s)	1684
PmaCI	CACGTG	1 cut(s)	1736
PmlI	CACGTG	1 cut(s)	1736
PpsI	GAGTC	1 cut(s)	935
Ppu21I	YACGTR	1 cut(s)	1736
PpuMI	RGGWCCY	1 cut(s)	971
PshAI	GACNNNNGTC	1 cut(s)	863
PshBI	ATTAAT	1 cut(s)	1349
Psp124BI	GAGCTC	1 cut(s)	1675
Psp1406I	AACGTT	1 cut(s)	1944
Psp5II	RGGWCCY	1 cut(s)	971
Psp6I	CCWGG	7 cut(s)	113, 983, 1330, 1684, 1720, 2018, 2211
PspCI	CACGTG	1 cut(s)	1736
PspFI	CCCAGC	1 cut(s)	1136
PspGI	CCWGG	7 cut(s)	113, 983, 1330, 1684, 1720, 2018, 2211
PspLI	CGTACG	1 cut(s)	75
PspN4I	GGNNCC	4 cut(s)	27, 33, 989, 1682
PspOMI	GGGCCC	1 cut(s)	987
PspPI	GGNCC	9 cut(s)	25, 971, 987, 988, 1010, 1139, 1325, 1545, 2226
PspPPI	RGGWCCY	1 cut(s)	971
PsuI	RGATCY	3 cut(s)	224, 824, 1004
PvuII	CAGCTG	1 cut(s)	1991
RsaI	GTAC	3 cut(s)	77, 556, 2015
RsaNI	GTAC	3 cut(s)	76, 555, 2014
RseI	CAYNNNNRTG	2 cut(s)	1095, 2001
SacI	GAGCTC	1 cut(s)	1675
SalI	GTCGAC	1 cut(s)	953
SaqAI	TTAA	5 cut(s)	420, 1115, 1349, 1463, 1841
SatI	GCNGC	8 cut(s)	171, 205, 1074, 1374, 1679, 1809, 1863, 1992
Sau96I	GGNCC	9 cut(s)	25, 971, 987, 988, 1010, 1139, 1325, 1545, 2226
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	9 cut(s)	29, 115, 552, 985, 1332, 1686, 1722, 2020, 2213
SduI	GDGCHC	2 cut(s)	991, 1675
SfaNI	GCATC	9 cut(s)	253, 275, 607, 616, 1090, 1222, 1385, 1648, 2068
SfcI	CTRYAG	1 cut(s)	2170
SfoI	GGCGCC	1 cut(s)	1682
SfuI	TTCGAA	1 cut(s)	790
SinI	GGWCC	4 cut(s)	971, 1010, 1325, 1545
SmiMI	CAYNNNNRTG	2 cut(s)	1095, 2001
SmlI	CTYRAG	1 cut(s)	1893
SmoI	CTYRAG	1 cut(s)	1893
SseBI	AGGCCT	1 cut(s)	2176
SspDI	GGCGCC	1 cut(s)	1680
SspMI	CTAG	3 cut(s)	465, 962, 1812
SstI	GAGCTC	1 cut(s)	1675
StuI	AGGCCT	1 cut(s)	2176
StyD4I	CCNGG	9 cut(s)	27, 113, 550, 983, 1330, 1684, 1720, 2018, 2211
StyI	CCWWGG	4 cut(s)	199, 967, 1016, 1304
TaaI	ACNGT	4 cut(s)	341, 504, 737, 2121
TaiI	ACGT	2 cut(s)	1738, 1947
TaqI	TCGA	9 cut(s)	64, 499, 790, 954, 1502, 1656, 1879, 1926, 2218
TatI	WGTACW	1 cut(s)	2013
TauI	GCSGC	3 cut(s)	173, 207, 1681
TfiI	GAWTC	5 cut(s)	313, 932, 1613, 1774, 1934
Tru1I	TTAA	5 cut(s)	420, 1115, 1349, 1463, 1841
Tru9I	TTAA	5 cut(s)	420, 1115, 1349, 1463, 1841
TscAI	CASTG	1 cut(s)	1861
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	5 cut(s)	1073, 1373, 1808, 1862, 1991
Tsp45I	GTSAC	1 cut(s)	320
TspGWI	ACGGA	2 cut(s)	797, 1542
TspRI	CASTG	1 cut(s)	1861
VpaK11BI	GGWCC	4 cut(s)	971, 1010, 1325, 1545
VspI	ATTAAT	1 cut(s)	1349
XapI	RAATTY	4 cut(s)	1125, 1563, 1703, 1743
XceI	RCATGY	2 cut(s)	1042, 1411
XmiI	GTMKAC	1 cut(s)	954
XspI	CTAG	3 cut(s)	465, 962, 1812
Zsp2I	ATGCAT	3 cut(s)	6, 268, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.