Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000600.1

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Reverse (-)

194693 .. 201338

Gene Structure 6646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000600.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3837 bp

atgcccagagaggatctatcggagatgcatccgaagcgatcggatgggtcgccggcggcattacggagcagcgggcggatcagccggcgtccgaaaacttactcgcgaagcatgttctattacaacacgagtaccagtagcatgattcacaaacgcagaaggaaggccaagaccaagaaccgacctgccgcctccagaattgctaagatgatgcgcgatggctccactcgttcccaaagatcgccccaccccacttctcccactaagctcaatacaaacttaccccgtcgctccgaaagaaggagaactctgtcggtaaagaatccagattatgcatcagacagttccgatggtgatgaagacatgatgaaaccctctacatgtaaatctatcaagaatcggggtgcatatcaagatgaattatcaccttccaagcacaaaaagatggtcgagagaccaacacctcggcgtgaaggattgcgccctcgtcgctctaagactatttcaaatgaggatatactttttggatatgacgatcttcctgttgatagttcggaagagaaggttgaccaagaagaaaccgaaaatgggcaggatattgaatacaatgatgcagatgatggtcagaatgagggtgatggtgaagacatgggtgacgatgatggagatgaagatggtgatgaagatggtgatgatgatggtgatgatgaagagggcgaagaggaacaagatggaagaagacgttatgatcttcgaaatcgtgcagaagtccgcaggttctctattgaagaaggtaagcggagaccacgatctcctcgaagagtattgcaccagggaatggggccaaaggtcagtagggatgtaagaaagggtggatcacgagttcataagcgacatcgaatcacaaggactgatgattctgatgactcccttcttgtggatgagctcgaccaaggccctgcaattccttgggggaaaggtgggagcagatctggaccaccttggctttttgggggactagacatgcatggaacaacgacatggggtttgaatgttgctgcctcgggttggggtcaccagggtgatgcttttgctaccttgacttctggaattcaaactgctgggccaagctcaaaggggggggcagacatacaacctttgcaggttgatgatagtgtcagttttgaggatatagggggactttctcaatatattgatgctttgaaggaaatggttttctttcctttactgtatccagatttctttgcaagctatcatatcaccccaccaaggggagttttgttatgtggtcctcctggtactgggaaaacgttaattgccagagccttagcctctgctgcatccaaggctggccagaaagtgagtttttacatgaggaagggtgcagatgtcctaagcaagtgggttggcgaggctgaaagacaattgaaacttctttttgaggaagcacaaagaaatcaaccttcaatcatattctttgatgaaatagatggactggctcctgtaagatccagcaaacaagagcaaattcataattctattgtgtctacattacttgctctgatggatggtcttgattcccgtggacaagtggttttgatcggagcaaccaaccgaattgatgcaattgatggagctttgcggcgccctggtagatttgatcgtgaattcaactttcctttgcctggctgtgaggcccgtgctgaaattttagacattcacagtcggaaatggaagcatcctccttcaaatgagttaaaactggagcttgcagctagctgtgttggatattgtggtgctgatttaaaggctctttgcactgaagctgctattcgtgctttccgtgaaaaatatcctcaggtctacacaagtgatgataaatttgtaattgatgttgattcagtaagggttgaaaagtatcactttgttgaagccatgtcaacaatcaccccagctgctcacagaggtgctgttgtgcactctaggccattgtctttagtagttgcaccatgcctgcagaggcatctccaaagagccatgaactatatatccgatattttccctccgattgcagtgtcatcagaattgaccaagctttccatgctctcttgtggctctgcgattcctcttgtttataggcctcggcttcttctatgtggtggtgaaggttctggcctggatcatcttgggcctgctattttacatgaactcgagaagtttcctgtccattctctaggacttccatctcttctatctgatcctagtgcaaagacaccagaggaagcactggtacatatatttggtgaagcaaggaggacgacgccatcaattctctacttgccacagttcaatctgtggtgggagacggcacatgagcagctccgcgcagttttgctgacattgctagaagaatttccatctgatttacctatattactacttgcaacgtcatcagtgccacctgctgaagttgatgctatgacctcttcaatattctccgaacgttctgtgtatgttgtcctcatcttaaaacctaccaaaatttttgaattcaattcctgtgagactgattttatatgggatatgtttgtggatgttgtcaaatatgcgttagaattgtggagaagggtttcacctgaactaaacgacaagaagataaaactcactataagagtggatacgccttctactgaagacagatctttgttttttgaccgtctgattgaagctgccttgtcagtcttgttggagggcacaactaaaagatctcaggaatcagtatctgttcctgaacttccaaaggctccaaaagtggcaagcggtccaaaggtgtcagagttaaaagccaaggtagaagctgagcagcatgctcttcgccgattgcggatgtgcctcagagatgtttgcaatagaattctatacgataagaggtttagtgcttttcactatcctgtcttggatgaggatgctccaaactatcgctcaattattcaaaatcctatggatgttgcaactctgctgcagcgtgttgactctgggctctatattacatgttcagcattcctgcaagatgttgatcttatagtttctaatgcaaaggcttataatggagatgattacaatggtgctaggattgttagtagaggttatgagcttcgagatgccgtacatggaatgctgtcacagatggaccctgcgctgattgcatattgtgacaagattgctgctcaaggtggtccagaacaaatacctgaagatttaggggtagctaccttcccatcaatacctgttgtacagctgggaactgtcactagggcgagtgctcgacttcgtaatgtgcagccggaggtaaatctggatcatagctacgaggcacacaaacggccgaagaagaatattgatgccgcacctgcagcttcaacagcagaagacaagtcacagcatcaaggttctgtaccgtccacgtcatctcaggaacccgagacgaataacgcagatcttggagtgccagaaacctcttctgttgttcccaatcagcttgacacttctgaagtcgtagaagtttctggccatgctgatgcgagtggatctgaagacatcaagatgttagatggtgagattacaaaccaaatggagtctgtcaagcggctttttgtggagcagaccaaaacttatgacattccacagcttgagaggctttatgcaagaattatgaagggcattttcgacatcaaggacaaaagcgatatggatggcaccaagcatttaattttgaagtatttgttgaaatttgcagaggatgaagcaaatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

1278

Amino Acids

142.17

Weight (kDa)

5.75

Isoelectric Point (pI)

57.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3126
AarI	CACCTGC	2 cut(s)	2491, 3439
Acc36I	ACCTGC	5 cut(s)	193, 765, 1153, 2491, 3439
AccB1I	GGYRCC	2 cut(s)	1665, 3776
AccB7I	CCANNNNNTGG	1 cut(s)	838
AccI	GTMKAC	2 cut(s)	1568, 1884
AccII	CGCG	3 cut(s)	106, 216, 2406
AclI	AACGTT	2 cut(s)	1331, 2524
AclWI	GGATC	8 cut(s)	21, 86, 883, 1524, 2208, 2273, 3387, 3616
AcoI	YGGCCR	3 cut(s)	1372, 3404, 3589
AcuI	CTGAAG	6 cut(s)	1863, 2508, 2733, 3294, 3591, 3633
AcyI	GRCGYC	3 cut(s)	88, 1666, 2342
AfaI	GTAC	6 cut(s)	133, 1321, 2313, 3189, 3315, 3477
AflIII	ACRYGT	2 cut(s)	380, 3071
AjiI	CACGTC	1 cut(s)	3486
AjnI	CCWGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
AleI	CACNNNNGTG	2 cut(s)	1080, 1986
AloI	GAACNNNNNNTCC	4 cut(s)	867, 899, 2054, 2086
Alw21I	GWGCWC	3 cut(s)	948, 2001, 3346
Alw26I	GTCTC	5 cut(s)	448, 796, 2378, 2579, 3497
Alw44I	GTGCAC	1 cut(s)	1997
AlwI	GGATC	8 cut(s)	21, 86, 883, 1524, 2208, 2273, 3387, 3616
AlwNI	CAGNNNCTG	1 cut(s)	2804
Ama87I	CYCGRG	3 cut(s)	1063, 2231, 3500
ApaLI	GTGCAC	1 cut(s)	1997
ArsI	GACNNNNNNTTYG	4 cut(s)	432, 464, 1030, 1062
Asp700I	GAANNNNTTC	2 cut(s)	2433, 2650
AspLEI	GCGC	5 cut(s)	216, 483, 1668, 2408, 3220
AsuII	TTCGAA	1 cut(s)	754
AsuNHI	GCTAGC	1 cut(s)	1796
AvaI	CYCGRG	3 cut(s)	1063, 2231, 3500
AvaII	GGWCC	5 cut(s)	995, 1310, 2843, 3211, 3257
AxyI	CCTNAGG	1 cut(s)	1878
BaeGI	GKGCMC	2 cut(s)	2001, 2777
BaeI	ACNNNNGTAYC	2 cut(s)	115, 148
BalI	TGGCCA	2 cut(s)	1374, 3591
BanI	GGYRCC	2 cut(s)	1665, 3776
BanII	GRGCYC	2 cut(s)	948, 3063
BarI	GAAGNNNNNNTAC	2 cut(s)	2295, 2327
BauI	CACGAG	2 cut(s)	127, 879
BbsI	GAAGAC	6 cut(s)	366, 651, 745, 2721, 3456, 3621
Bbv12I	GWGCWC	3 cut(s)	948, 2001, 3346
BceAI	ACGGC	3 cut(s)	2403, 3170, 3419
BcgI	CGANNNNNNTGC	2 cut(s)	2876, 2910
BciT130I	CCWGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
BciVI	GTATCC	2 cut(s)	1263, 2692
BcoDI	GTCTC	5 cut(s)	448, 796, 2378, 2579, 3497
BfaI	CTAG	8 cut(s)	1019, 1797, 2004, 2255, 2283, 2426, 3150, 3333
BfmI	CTRYAG	3 cut(s)	2036, 3041, 3432
BfoI	RGCGCY	1 cut(s)	1669
BfuAI	ACCTGC	5 cut(s)	193, 765, 1153, 2491, 3439
BfuI	GTATCC	2 cut(s)	1263, 2692
BglII	AGATCT	4 cut(s)	989, 2720, 2786, 3517
BlpI	GCTNAGC	1 cut(s)	2880
Bme1390I	CCNGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
Bme18I	GGWCC	5 cut(s)	995, 1310, 2843, 3211, 3257
BmeT110I	CYCGRG	3 cut(s)	1063, 2231, 3500
BmgBI	CACGTC	1 cut(s)	3486
BmiI	GGNNCC	8 cut(s)	223, 843, 1521, 1667, 2826, 3213, 3498, 3778
BmrFI	CCNGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
BmrI	ACTGGG	1 cut(s)	1332
BmtI	GCTAGC	1 cut(s)	1800
BmuI	ACTGGG	1 cut(s)	1332
BpiI	GAAGAC	6 cut(s)	366, 651, 745, 2721, 3456, 3621
BpmI	CTGGAG	2 cut(s)	178, 1805
Bpu10I	CCTNAGC	2 cut(s)	1348, 1415
Bpu1102I	GCTNAGC	1 cut(s)	2880
Bpu14I	TTCGAA	1 cut(s)	754
BpuEI	CTTGAG	2 cut(s)	3234, 3731
BsaBI	GATNNNNATC	1 cut(s)	3096
BsaHI	GRCGYC	3 cut(s)	88, 1666, 2342
BsaI	GGTCTC	2 cut(s)	448, 796
Bse118I	RCCGGY	2 cut(s)	52, 84
Bse1I	ACTGG	5 cut(s)	135, 1327, 1521, 1788, 2313
Bse21I	CCTNAGG	1 cut(s)	1878
Bse3DI	GCAATG	1 cut(s)	2420
Bse8I	GATNNNNATC	1 cut(s)	3096
BseBI	CCWGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
BseJI	GATNNNNATC	1 cut(s)	3096
BseMI	GCAATG	1 cut(s)	2420
BseMII	CTCAG	5 cut(s)	1892, 2804, 2871, 2929, 3506
BseNI	ACTGG	5 cut(s)	135, 1327, 1521, 1788, 2313
BseRI	GAGGAG	1 cut(s)	804
BseSI	GKGCMC	2 cut(s)	2001, 2777
BseX3I	CGGCCG	1 cut(s)	3404
BseYI	CCCAGC	3 cut(s)	1121, 1972, 3319
BsgI	GTGCAG	3 cut(s)	783, 1425, 3380
Bsh1236I	CGCG	3 cut(s)	106, 216, 2406
Bsh1285I	CGRYCG	2 cut(s)	41, 3407
BshNI	GGYRCC	2 cut(s)	1665, 3776
BsiEI	CGRYCG	2 cut(s)	41, 3407
BsiHKAI	GWGCWC	3 cut(s)	948, 2001, 3346
BsiHKCI	CYCGRG	3 cut(s)	1063, 2231, 3500
BsiSI	CCGG	3 cut(s)	53, 85, 3365
BslFI	GGGAC	2 cut(s)	1029, 1212
BsmAI	GTCTC	5 cut(s)	448, 796, 2378, 2579, 3497
BsmBI	CGTCTC	2 cut(s)	2378, 3497
BsmFI	GGGAC	2 cut(s)	1029, 1212
BsmI	GAATGC	2 cut(s)	3080, 3201
Bso31I	GGTCTC	2 cut(s)	448, 796
BsoBI	CYCGRG	3 cut(s)	1063, 2231, 3500
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	5 cut(s)	948, 2001, 2777, 3063, 3346
Bsp1407I	TGTACA	1 cut(s)	3313
Bsp1720I	GCTNAGC	1 cut(s)	2880
Bsp68I	TCGCGA	1 cut(s)	106
BspCNI	CTCAG	5 cut(s)	1891, 2803, 2872, 2928, 3505
BspFNI	CGCG	3 cut(s)	106, 216, 2406
BspLI	GGNNCC	8 cut(s)	223, 843, 1521, 1667, 2826, 3213, 3498, 3778
BspMAI	CTGCAG	3 cut(s)	2040, 3045, 3436
BspMI	ACCTGC	5 cut(s)	193, 765, 1153, 2491, 3439
BspOI	GCTAGC	1 cut(s)	1800
BspPI	GGATC	8 cut(s)	21, 86, 883, 1524, 2208, 2273, 3387, 3616
BspQI	GCTCTTC	1 cut(s)	2898
BspT104I	TTCGAA	1 cut(s)	754
BspT107I	GGYRCC	2 cut(s)	1665, 3776
BspTNI	GGTCTC	2 cut(s)	448, 796
BsrDI	GCAATG	1 cut(s)	2420
BsrFI	RCCGGY	2 cut(s)	52, 84
BsrGI	TGTACA	1 cut(s)	3313
BsrI	ACTGG	5 cut(s)	135, 1327, 1521, 1788, 2313
BssAI	RCCGGY	2 cut(s)	52, 84
BssNI	GRCGYC	3 cut(s)	88, 1666, 2342
BssSI	CACGAG	2 cut(s)	127, 879
BssT1I	CCWWGG	6 cut(s)	952, 968, 1001, 1289, 1365, 2868
Bst2BI	CACGAG	2 cut(s)	127, 879
Bst2UI	CCWGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
Bst4CI	ACNGT	7 cut(s)	344, 1251, 1745, 2367, 2738, 3328, 3480
Bst6I	CTCTTC	8 cut(s)	552, 705, 714, 814, 2274, 2512, 2898, 3544
BstACI	GRCGYC	3 cut(s)	88, 1666, 2342
BstAUI	TGTACA	1 cut(s)	3313
BstBI	TTCGAA	1 cut(s)	754
BstDSI	CCRYGG	1 cut(s)	1603
BstEII	GGTNACC	1 cut(s)	1073
BstFNI	CGCG	3 cut(s)	106, 216, 2406
BstH2I	RGCGCY	1 cut(s)	1669
BstHHI	GCGC	5 cut(s)	216, 483, 1668, 2408, 3220
BstMAI	GTCTC	5 cut(s)	448, 796, 2378, 2579, 3497
BstMCI	CGRYCG	2 cut(s)	41, 3407
BstNI	CCWGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
BstNSI	RCATGY	5 cut(s)	115, 384, 1027, 2891, 3075
BstPI	GGTNACC	1 cut(s)	1073
BstSCI	CCNGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
BstSFI	CTRYAG	3 cut(s)	2036, 3041, 3432
BstSLI	GKGCMC	2 cut(s)	2001, 2777
BstUI	CGCG	3 cut(s)	106, 216, 2406
BstV2I	GAAGAC	6 cut(s)	366, 651, 745, 2721, 3456, 3621
BstX2I	RGATCY	7 cut(s)	13, 989, 1529, 2720, 2786, 3517, 3608
BstYI	RGATCY	7 cut(s)	13, 989, 1529, 2720, 2786, 3517, 3608
BstZI	CGGCCG	1 cut(s)	3404
Bsu36I	CCTNAGG	1 cut(s)	1878
BsuI	GTATCC	2 cut(s)	1263, 2692
BtgI	CCRYGG	1 cut(s)	1603
BtgZI	GCGATG	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	3486
BtsI	GCAGTG	1 cut(s)	2100
BtsIMutI	CAGTG	4 cut(s)	1839, 2100, 2306, 2481
BtuMI	TCGCGA	1 cut(s)	106
BveI	ACCTGC	5 cut(s)	193, 765, 1153, 2491, 3439
CaiI	CAGNNNCTG	1 cut(s)	2804
CfoI	GCGC	5 cut(s)	216, 483, 1668, 2408, 3220
Cfr10I	RCCGGY	2 cut(s)	52, 84
CseI	GACGC	2 cut(s)	77, 2350
Csp6I	GTAC	6 cut(s)	132, 1320, 2312, 3188, 3314, 3476
CviQI	GTAC	6 cut(s)	132, 1320, 2312, 3188, 3314, 3476
DinI	GGCGCC	1 cut(s)	1667
DraI	TTTAAA	1 cut(s)	1827
EaeI	YGGCCR	3 cut(s)	1372, 3404, 3589
EagI	CGGCCG	1 cut(s)	3404
Eam1104I	CTCTTC	8 cut(s)	552, 705, 714, 814, 2274, 2512, 2898, 3544
EarI	CTCTTC	8 cut(s)	552, 705, 714, 814, 2274, 2512, 2898, 3544
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	946
EclXI	CGGCCG	1 cut(s)	3404
Eco130I	CCWWGG	6 cut(s)	952, 968, 1001, 1289, 1365, 2868
Eco147I	AGGCCT	1 cut(s)	2161
Eco24I	GRGCYC	2 cut(s)	948, 3063
Eco31I	GGTCTC	2 cut(s)	448, 796
Eco47I	GGWCC	5 cut(s)	995, 1310, 2843, 3211, 3257
Eco52I	CGGCCG	1 cut(s)	3404
Eco53kI	GAGCTC	1 cut(s)	946
Eco57I	CTGAAG	6 cut(s)	1863, 2508, 2733, 3294, 3591, 3633
Eco81I	CCTNAGG	1 cut(s)	1878
Eco88I	CYCGRG	3 cut(s)	1063, 2231, 3500
Eco91I	GGTNACC	1 cut(s)	1073
EcoICRI	GAGCTC	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	956
EcoO65I	GGTNACC	1 cut(s)	1073
EcoRI	GAATTC	4 cut(s)	1110, 1688, 2570, 2934
EcoRII	CCWGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
EcoT14I	CCWWGG	6 cut(s)	952, 968, 1001, 1289, 1365, 2868
EcoT22I	ATGCAT	3 cut(s)	30, 337, 1029
EcoT38I	GRGCYC	2 cut(s)	948, 3063
EgeI	GGCGCC	1 cut(s)	1667
EheI	GGCGCC	1 cut(s)	1667
ErhI	CCWWGG	6 cut(s)	952, 968, 1001, 1289, 1365, 2868
Esp3I	CGTCTC	2 cut(s)	2378, 3497
FalI	AAGNNNNNCTT	2 cut(s)	1928, 1960
FaqI	GGGAC	2 cut(s)	1029, 1212
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	2 cut(s)	1568, 1884
FriOI	GRGCYC	2 cut(s)	948, 3063
FspBI	CTAG	8 cut(s)	1019, 1797, 2004, 2255, 2283, 2426, 3150, 3333
GlaI	GCGC	5 cut(s)	215, 482, 1667, 2407, 3219
GsaI	CCCAGC	3 cut(s)	1125, 1976, 3323
GsuI	CTGGAG	2 cut(s)	178, 1805
HaeII	RGCGCY	1 cut(s)	1669
HapII	CCGG	3 cut(s)	53, 85, 3365
HgaI	GACGC	2 cut(s)	77, 2350
HhaI	GCGC	5 cut(s)	216, 483, 1668, 2408, 3220
Hin1I	GRCGYC	3 cut(s)	88, 1666, 2342
Hin6I	GCGC	5 cut(s)	214, 481, 1666, 2406, 3218
HinP1I	GCGC	5 cut(s)	214, 481, 1666, 2406, 3218
HincII	GTYRAC	3 cut(s)	568, 1962, 3052
HindII	GTYRAC	3 cut(s)	568, 1962, 3052
HindIII	AAGCTT	1 cut(s)	2114
HpaII	CCGG	3 cut(s)	53, 85, 3365
Hpy166II	GTNNAC	8 cut(s)	568, 1569, 1607, 1885, 1962, 1999, 3052, 3483
Hpy8I	GTNNAC	8 cut(s)	568, 1569, 1607, 1885, 1962, 1999, 3052, 3483
Hpy99I	CGWCG	3 cut(s)	291, 492, 2344
HpyCH4III	ACNGT	7 cut(s)	344, 1251, 1745, 2367, 2738, 3328, 3480
HpyCH4IV	ACGT	5 cut(s)	742, 1331, 2468, 2524, 3485
HpySE526I	ACGT	5 cut(s)	742, 1331, 2468, 2524, 3485
Hsp92I	GRCGYC	3 cut(s)	88, 1666, 2342
HspAI	GCGC	5 cut(s)	214, 481, 1666, 2406, 3218
KasI	GGCGCC	1 cut(s)	1665
KroI	GCCGGC	2 cut(s)	52, 84
KroNI	GCCGGC	2 cut(s)	54, 86
LguI	GCTCTTC	1 cut(s)	2898
MaeI	CTAG	8 cut(s)	1019, 1797, 2004, 2255, 2283, 2426, 3150, 3333
MaeII	ACGT	5 cut(s)	742, 1331, 2468, 2524, 3485
MaeIII	GTNAC	6 cut(s)	653, 1073, 3201, 3233, 3328, 3456
MfeI	CAATTG	2 cut(s)	1445, 1647
MflI	RGATCY	7 cut(s)	13, 989, 1529, 2720, 2786, 3517, 3608
MhlI	GDGCHC	5 cut(s)	948, 2001, 2777, 3063, 3346
MlsI	TGGCCA	2 cut(s)	1374, 3591
MluNI	TGGCCA	2 cut(s)	1374, 3591
Mly113I	GGCGCC	1 cut(s)	1666
MlyI	GAGTC	3 cut(s)	920, 3047, 3665
MmeI	TCCRAC	3 cut(s)	1727, 1786, 2748
Mox20I	TGGCCA	2 cut(s)	1374, 3591
Mph1103I	ATGCAT	3 cut(s)	30, 337, 1029
MreI	CGCCGGCG	1 cut(s)	52
MroNI	GCCGGC	2 cut(s)	52, 84
MroXI	GAANNNNTTC	2 cut(s)	2433, 2650
MscI	TGGCCA	2 cut(s)	1374, 3591
MseI	TTAA	6 cut(s)	1334, 1778, 1826, 2549, 2861, 3788
MslI	CAYNNNNRTG	4 cut(s)	1080, 1986, 3597, 3623
Msp20I	TGGCCA	2 cut(s)	1374, 3591
MspA1I	CMGCKG	3 cut(s)	72, 1976, 3319
MspI	CCGG	3 cut(s)	53, 85, 3365
MspR9I	CCNGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
MunI	CAATTG	2 cut(s)	1445, 1647
Mva1269I	GAATGC	2 cut(s)	3080, 3201
MvaI	CCWGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
MvnI	CGCG	3 cut(s)	106, 216, 2406
NaeI	GCCGGC	2 cut(s)	54, 86
NarI	GGCGCC	1 cut(s)	1666
NgoMIV	GCCGGC	2 cut(s)	52, 84
NheI	GCTAGC	1 cut(s)	1796
NlaIV	GGNNCC	8 cut(s)	223, 843, 1521, 1667, 2826, 3213, 3498, 3778
NmeAIII	GCCGAG	2 cut(s)	445, 2143
NmuCI	GTSAC	6 cut(s)	653, 1073, 3201, 3233, 3328, 3456
NruI	TCGCGA	1 cut(s)	106
NsiI	ATGCAT	3 cut(s)	30, 337, 1029
NspI	RCATGY	5 cut(s)	115, 384, 1027, 2891, 3075
NspV	TTCGAA	1 cut(s)	754
OliI	CACNNNNGTG	2 cut(s)	1080, 1986
PaeI	GCATGC	1 cut(s)	2891
PaeR7I	CTCGAG	1 cut(s)	2231
PaqCI	CACCTGC	2 cut(s)	2491, 3439
PceI	AGGCCT	1 cut(s)	2161
PciI	ACATGT	2 cut(s)	380, 3071
PciSI	GCTCTTC	1 cut(s)	2898
PcsI	WCGNNNNNNNCGW	2 cut(s)	814, 1861
PctI	GAATGC	2 cut(s)	3080, 3201
PdiI	GCCGGC	2 cut(s)	54, 86
PdmI	GAANNNNTTC	2 cut(s)	2433, 2650
PfeI	GAWTC	9 cut(s)	145, 322, 397, 900, 917, 1598, 1919, 2143, 2795
PflMI	CCANNNNNTGG	1 cut(s)	838
Ple19I	CGATCG	1 cut(s)	41
PleI	GAGTC	3 cut(s)	920, 3047, 3664
PluTI	GGCGCC	1 cut(s)	1669
PpsI	GAGTC	3 cut(s)	920, 3047, 3664
PscI	ACATGT	2 cut(s)	380, 3071
PsiI	TTATAA	1 cut(s)	3126
Psp124BI	GAGCTC	1 cut(s)	948
Psp1406I	AACGTT	2 cut(s)	1331, 2524
Psp6I	CCWGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
PspEI	GGTNACC	1 cut(s)	1073
PspFI	CCCAGC	3 cut(s)	1121, 1972, 3319
PspGI	CCWGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
PspN4I	GGNNCC	8 cut(s)	223, 843, 1521, 1667, 2826, 3213, 3498, 3778
PstI	CTGCAG	3 cut(s)	2040, 3045, 3436
PstNI	CAGNNNCTG	1 cut(s)	2804
PsuI	RGATCY	7 cut(s)	13, 989, 1529, 2720, 2786, 3517, 3608
PvuI	CGATCG	1 cut(s)	41
PvuII	CAGCTG	2 cut(s)	1976, 3319
RruI	TCGCGA	1 cut(s)	106
RsaI	GTAC	6 cut(s)	133, 1321, 2313, 3189, 3315, 3477
RsaNI	GTAC	6 cut(s)	132, 1320, 2312, 3188, 3314, 3476
RseI	CAYNNNNRTG	4 cut(s)	1080, 1986, 3597, 3623
SacI	GAGCTC	1 cut(s)	948
SapI	GCTCTTC	1 cut(s)	2898
SaqAI	TTAA	6 cut(s)	1334, 1778, 1826, 2549, 2861, 3788
SchI	GAGTC	3 cut(s)	920, 3047, 3665
ScrFI	CCNGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
SduI	GDGCHC	5 cut(s)	948, 2001, 2777, 3063, 3346
SfcI	CTRYAG	3 cut(s)	2036, 3041, 3432
SfoI	GGCGCC	1 cut(s)	1667
Sfr274I	CTCGAG	1 cut(s)	2231
SfuI	TTCGAA	1 cut(s)	754
SgrAI	CRCCGGYG	1 cut(s)	52
SinI	GGWCC	5 cut(s)	995, 1310, 2843, 3211, 3257
SlaI	CTCGAG	1 cut(s)	2231
SmiMI	CAYNNNNRTG	4 cut(s)	1080, 1986, 3597, 3623
SmlI	CTYRAG	3 cut(s)	2231, 3249, 3710
SmoI	CTYRAG	3 cut(s)	2231, 3249, 3710
SphI	GCATGC	1 cut(s)	2891
SseBI	AGGCCT	1 cut(s)	2161
SspDI	GGCGCC	1 cut(s)	1665
SspI	AATATT	2 cut(s)	2514, 3418
SspMI	CTAG	8 cut(s)	1019, 1797, 2004, 2255, 2283, 2426, 3150, 3333
SstI	GAGCTC	1 cut(s)	948
StuI	AGGCCT	1 cut(s)	2161
StyD4I	CCNGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
StyI	CCWWGG	6 cut(s)	952, 968, 1001, 1289, 1365, 2868
TaaI	ACNGT	7 cut(s)	344, 1251, 1745, 2367, 2738, 3328, 3480
TaiI	ACGT	5 cut(s)	745, 1334, 2471, 2527, 3488
TaqI	TCGA	9 cut(s)	450, 754, 817, 898, 948, 2232, 3178, 3346, 3747
TatI	WGTACW	1 cut(s)	3313
TauI	GCSGC	5 cut(s)	59, 191, 1666, 3428, 3670
TfiI	GAWTC	9 cut(s)	145, 322, 397, 900, 917, 1598, 1919, 2143, 2795
Tru1I	TTAA	6 cut(s)	1334, 1778, 1826, 2549, 2861, 3788
Tru9I	TTAA	6 cut(s)	1334, 1778, 1826, 2549, 2861, 3788
TscAI	CASTG	4 cut(s)	1846, 2100, 2313, 2481
TseFI	GTSAC	6 cut(s)	653, 1073, 3201, 3233, 3328, 3456
Tsp45I	GTSAC	6 cut(s)	653, 1073, 3201, 3233, 3328, 3456
TspGWI	ACGGA	2 cut(s)	79, 1853
TspRI	CASTG	4 cut(s)	1846, 2100, 2313, 2481
Van91I	CCANNNNNTGG	1 cut(s)	838
VneI	GTGCAC	1 cut(s)	1997
VpaK11BI	GGWCC	5 cut(s)	995, 1310, 2843, 3211, 3257
XceI	RCATGY	5 cut(s)	115, 384, 1027, 2891, 3075
XhoI	CTCGAG	1 cut(s)	2231
XmiI	GTMKAC	2 cut(s)	1568, 1884
XmnI	GAANNNNTTC	2 cut(s)	2433, 2650
XspI	CTAG	8 cut(s)	1019, 1797, 2004, 2255, 2283, 2426, 3150, 3333
Zsp2I	ATGCAT	3 cut(s)	30, 337, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.