Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Reverse (-)

11620652 .. 11621278

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0075300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGGCAATGCAAATCAAAGCAAGATATGGCTTCTCTGCCCACAGGAGCAGCCAGTTCTCCATCTTCTTCTCTCCCACTTTCCTCTACCGATTACCAAAATCATTACACATACCAGGTCTTCCTGAGTTTTCGAGGCGAGGATACGCGCTTTAATTTTACAGATCATTTGCACGCCGCTTTGGATAACAGGGGAATTAAGACCTTCATAGATGACGAGCTCAGAAGAGGAGAAGAAATATCATCGGCTCTTCTCAAAGCTATTGAGGAGTCTAGAGTTTCAGTCATCGTCTTCTCTCGAAATTATGCTGCCTCAAGGTGGTGCTTAGATGAACTGGTCAAGATACTTGAATGCAGAGAATCAAAAGGACAAGAGGTCAGACCGGTTTTCTACAAGGTGGCTCCCTCAGATGTACGACACCAAACAGGCGCTTTCGGTGACGCATTTGCTACCCTTGATCAATGCAAATACAAGGATAGCCTGGGCAAATGGAGGAAGGCTCTTTCAGATGCAGCAAATTTGTCTGGATGGACTTTCGAGGAGGGCCGGTATGTTGATTTACCTTATCAAGGCTTACCCAAGAATTGTTGGGGATTTGTCCGCCCAAGTAATAAACCCTTCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

208

Amino Acids

23.48

Weight (kDa)

7.63

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	38 - 181	7.5e-52	TIR domain
TIR_2	PF13676	40 - 135	2.1e-17	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	148
AciI	CCGC	2 cut(s)	177, 601
AcsI	RAATTY	1 cut(s)	517
AcvI	CACGTG	1 cut(s)	624
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	318, 569
AgeI	ACCGGT	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	350
AhdI	GACNNNNNGTC	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	114, 480
AluBI	AGCT	2 cut(s)	220, 260
AluI	AGCT	2 cut(s)	220, 260
Alw21I	GWGCWC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	3 cut(s)	50, 308, 512
ApoI	RAATTY	1 cut(s)	517
AsiGI	ACCGGT	1 cut(s)	382
AspLEI	GCGC	2 cut(s)	150, 431
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	222
BbrPI	CACGTG	1 cut(s)	624
BbsI	GAAGAC	2 cut(s)	112, 283
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	62, 295, 524
BccI	CCATC	2 cut(s)	70, 522
BciT130I	CCWGG	2 cut(s)	116, 482
BciVI	GTATCC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	457
BfaI	CTAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	432
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	4 cut(s)	51, 177, 309, 513
BlsI	GCNGC	4 cut(s)	52, 178, 310, 514
Bme1390I	CCNGG	2 cut(s)	116, 482
BmeRI	GACNNNNNGTC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	2 cut(s)	116, 482
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	2 cut(s)	112, 283
BplI	GAGNNNNNCTC	2 cut(s)	484, 516
BpuEI	CTTGAG	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	481
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 569
Bse118I	RCCGGY	2 cut(s)	382, 546
Bse1I	ACTGG	2 cut(s)	54, 339
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	116, 482
BseDI	CCNNGG	1 cut(s)	481
BseGI	GGATG	1 cut(s)	533
BseLI	CCNNNNNNNGG	2 cut(s)	318, 569
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	116, 235, 420
BseNI	ACTGG	2 cut(s)	54, 339
BseRI	GAGGAG	3 cut(s)	243, 281, 554
BseXI	GCAGC	3 cut(s)	62, 295, 524
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	546
BshTI	ACCGGT	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	383, 547
BslI	CCNNNNNNNGG	2 cut(s)	318, 569
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	163, 457
BspACI	CCGC	2 cut(s)	177, 601
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	3 cut(s)	117, 234, 419
BspFNI	CGCG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	402
BspQI	GCTCTTC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	2 cut(s)	382, 546
BsrI	ACTGG	2 cut(s)	54, 339
BssAI	RCCGGY	2 cut(s)	382, 546
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	2 cut(s)	163, 457
Bst2UI	CCWGG	2 cut(s)	116, 482
Bst6I	CTCTTC	2 cut(s)	220, 255
BstBAI	YACGTR	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	4 cut(s)	125, 221, 325, 406
BstENI	CCTNNNNNAGG	1 cut(s)	567
BstF5I	GGATG	1 cut(s)	533
BstFNI	CGCG	1 cut(s)	148
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	2 cut(s)	150, 431
BstKTI	GATC	2 cut(s)	166, 460
BstMBI	GATC	2 cut(s)	163, 457
BstNI	CCWGG	2 cut(s)	116, 482
BstSCI	CCNGG	2 cut(s)	114, 480
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	3 cut(s)	62, 295, 524
BstV2I	GAAGAC	2 cut(s)	112, 283
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	533
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	2 cut(s)	150, 431
Cfr10I	RCCGGY	2 cut(s)	382, 546
Cfr13I	GGNCC	1 cut(s)	544
CseI	GACGC	1 cut(s)	449
CsiI	ACCWGGT	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	413
CspAI	ACCGGT	1 cut(s)	382
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	4 cut(s)	125, 221, 325, 406
DpnI	GATC	2 cut(s)	165, 459
DpnII	GATC	2 cut(s)	163, 457
DriI	GACNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	2 cut(s)	220, 255
Eam1105I	GACNNNNNGTC	1 cut(s)	374
EarI	CTCTTC	2 cut(s)	220, 255
EciI	GGCGGA	1 cut(s)	590
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
Eco72I	CACGTG	1 cut(s)	624
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	114, 480
EcoT38I	GRGCYC	1 cut(s)	222
FaiI	YATR	5 cut(s)	29, 112, 209, 306, 552
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	4 cut(s)	51, 177, 309, 513
FokI	GGATG	1 cut(s)	540
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	51, 177, 309, 513
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	2 cut(s)	149, 430
GluI	GCNGC	4 cut(s)	51, 177, 309, 513
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	2 cut(s)	383, 547
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	2 cut(s)	150, 431
Hin6I	GCGC	2 cut(s)	148, 429
HinP1I	GCGC	2 cut(s)	148, 429
HinfI	GANTC	2 cut(s)	269, 359
HpaII	CCGG	2 cut(s)	383, 547
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	224, 380, 409, 508
Hpy188III	TCNNGA	5 cut(s)	124, 273, 297, 340, 525
HpyAV	CCTTC	2 cut(s)	214, 490
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	5 cut(s)	12, 172, 354, 465, 512
HpyF3I	CTNAG	4 cut(s)	125, 221, 325, 406
HpySE526I	ACGT	1 cut(s)	623
HspAI	GCGC	2 cut(s)	148, 429
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	163, 457
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	47, 406
Lsp1109I	GCAGC	3 cut(s)	62, 295, 524
LweI	GCATC	1 cut(s)	499
MabI	ACCWGGT	1 cut(s)	114
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	2 cut(s)	165, 459
MboI	GATC	2 cut(s)	163, 457
MboII	GAAGA	7 cut(s)	57, 60, 112, 237, 242, 245, 283
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	5 cut(s)	154, 195, 301, 517, 583
MlyI	GAGTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	153, 198
MspI	CCGG	2 cut(s)	383, 547
MspR9I	CCNGG	2 cut(s)	116, 482
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	2 cut(s)	116, 482
MvnI	CGCG	1 cut(s)	148
NdeII	GATC	2 cut(s)	163, 457
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	359
PinAI	ACCGGT	1 cut(s)	382
PkrI	GCNGC	4 cut(s)	52, 178, 310, 514
PleI	GAGTC	1 cut(s)	277
PmaCI	CACGTG	1 cut(s)	624
PmlI	CACGTG	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	114, 480
PspCI	CACGTG	1 cut(s)	624
PspGI	CCWGG	2 cut(s)	114, 480
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	544
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	153, 198
SatI	GCNGC	4 cut(s)	51, 177, 309, 513
Sau3AI	GATC	2 cut(s)	163, 457
Sau96I	GGNCC	1 cut(s)	544
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	116, 482
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	9 cut(s)	120, 206, 222, 262, 320, 378, 399, 565, 626
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	5 cut(s)	154, 195, 301, 517, 583
SsiI	CCGC	2 cut(s)	177, 601
SspMI	CTAG	1 cut(s)	273
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	114, 480
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	3 cut(s)	133, 298, 537
TasI	AATT	5 cut(s)	154, 195, 301, 517, 583
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	153, 198
Tru9I	TTAA	2 cut(s)	153, 198
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	3 cut(s)	50, 308, 512
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	2 cut(s)	196, 345
XagI	CCTNNNNNAGG	1 cut(s)	567
XapI	RAATTY	1 cut(s)	517
XbaI	TCTAGA	1 cut(s)	272
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.