Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Reverse (-)

48217219 .. 48219981

Gene Structure 2763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45914

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2763 bp

ATGATGAGTGACAAAGGGAGAAGAAAGAAGAGAGGTGGTGCCTCCAGAATTGGTGAGATGATGCGCCATGGCACCACTACTCCGATTGCCTCCCTCAATACAGATTATGTATCAGACAGTTCCAATGACATGATGAAACCCTCTATCAAGAATCCGGGTGCATATCAAGATGCAGCAGCATCACCTTACAAGCATGATCGACGTGAAGGATTGCGACCTCGTCGCTCAAACACAATTTCAACTCAAGATATAATTTTTGGGTATGACAATGATGATCCTGGTAGTTCGGTTGACCAGGATATTGAATACAATGATGATGGTCAGAAAGATGATGGTGATATTGGTGAGGGCCAAGATGGAAGAAGACGGTATCATTTTCGAAATCGAAATCGTTCACAAGTCCAAGTCGACAGGTTCTCTGTTGATCAAGGAATGGGGCCAAAGGTCGGTAAGGATGTAAGAGAGTGTGGATCCCCAGTTCACAAGCGTCATCGAATTACAAGGACTGATGATTCTGCGCTCGACCAAGCTCAAACTGCTGGGCCAAGCTCAGAGGGAGGGACAGACATACAACCTCTGCAGCTGGTTGATCGTAGTGTCAGTTTTGAGGATATAGGGGGGCTTTCTCAATATATTGATGCTCTGAAGGAAATGGTTTTCTTTCCTTTACTCTATCCAGATCTCTTTGCGAGTAATCATATCACCCCACCAAGGGGTGTCTTGTTATGTGGTCCTCCTGGTACTGGGAAGACATTAATTGCCAGAGCCTTAGCCTCTGCTGCATCCAAGGCTGGCCAGAAAGTTAGTTTTTACATGAGGAAGGGTGCAGATGTGCTAAGCAAGTGGGTTGGCGAGGCTGAAAGACAATTGAAACTTCTTTTTGAGGAAGCACAGAGAAATCAACCTTCAATCATATTCTTTGATGAAATAGATGGCCTGGCTCCTGTAAGATCCAGCAGGCAAGAGCAAACTCATAATTCTATTGTGTCTACATTGCTTGCTCTCATGGATGGTCTTGATTCCCGTGGAAAAGTGGTTTTGCTCGGAGCAACCAACCGAGTTGATGCAATTGATGGAGCTTTGCGGCGCCCCGGTAGATTTGATCGTGAATTCAACTTTCCTTTGCCTGGCTGTGAGGCCCGTGCTGAAATTTTAGACATTCACAGTCGGAAATGGAAGCATCCTCCTTCGAATGAGTTAAAATTGGAGCTTGCAGCTAGCTGTGTTGGATACTGTGGTGCTGATTTAAAGGCTCTTTGCACTGAAGCTGTCATTCGTGCTTTCCGTGACAAATATCCTCAGGTCTACACAAGTGATGATAAATTTGTAATTGATGTTGATTCAGTAAGGGTTGAAAAGTATCACTTTGTTGAAGCCATGTCAACAATCACCCCAGCTGCTCACAGAGGTGCTGCTGTGCACTCTAGGCCATTGTCTTTAGTAGTTGCACCATGCCTGCAGAGGCATCTACAAAAAGCCATGAGCTATATATCCGATATTTTTCCTCCGATTGCAGTGTCATCAGAATTGACCAAGCTTTCCGGCCTGTCTGCTTGTGGCTCTGCCATTCCTCCTGTTTACAGGCCTCGGTTTCTTCTATGTGGTGGTGAAGGTTCTGGCCTGGATCATCTAGGGCCTGCTATTTTACATGAACTCAACCAGTTTCCTGTTCATTGTCTAGGACTTGCATCTCTTCTATCTGACCCTAGTGCAAAGACACCAGAGGAAGCGCTGGTACATATTTTTGGTGAAGCAAGGAGAACGACGCCATCCATTCTCTACTTGCCACAGTTCAATCTGTGGTGGGGCAGGGCACATGAGCAGCTCGGCGCGGTTTTTCTGACTTTGCTACAAGAAGTTCCATCTGATTTACCTATATTACTACTTGCAACGTCATCTGAAGTTGATGCCATCACCTCTTCAATATTCTCCGAACGTTCTGTCTATCAGGTGACCGGTACGCCATCTAATGAAGACAGATGTTTGTTTTTTGACCGTCTGATCGAAGCTGCCTTGTCAGTCTTGTTGGAGGGCAGGAATAAAAGGTCTCAGGCTGAACTTCCGAAGGCTCCAAAAGTGGCAAGCGGTCCAAAGGTGTCAGAGTCAAACGCCAAGGTAGAATCTGAGCAGCGTGCTCTTTGCCTATTGCAGATGTGCCTCAGAGATGTTTGCAATCGAATTCTATCCGATGAGAGGTTTAGTGCTTTTCACCATCCCATCTTGGATGAGGATGCTCCAAACTATCACTCAATTATCCAAAATCCTATGGATGTTGCGACCCTGCTGCAGCGTGTTGACTCTGGGCTGTATGTTACATGTGAAGCATTCATGCAAGATGTTGATCTTATAGTTTCCAATGCAAAGGCTTATAATGGAGATGATTACAATGGGGCTAGGATTGTTAGTAGAGCTTATGAGCTTGGATACGTGGTACAGGGAATGCTGCAGTCACAGATGGGCCCTGGACTGATTGCATATTGTCACGAGATTGCTGCTCAAGGTGGCCCAGAAGATGTAACTGTTGTCACAAAGGCGAGTGCTCGACTTCGTAAGGTAAATCTGGATCCTAGCTACGAGGCACAAAAGAGGCTTTTTGTGCAGCGGACCGAAACTTGTGACATTCCACAGCTGGAGAGGCTTTACGCAAGAATTGTGAAGGACATTTTCAACATCGGGGACAGAGACAAAAGCAATATATTGCCACCTATGAATTTAATTTTCAAGTACTTGTCTAAATTTGCAGAGGATGAAGCAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

920

Amino Acids

101.76

Weight (kDa)

6.16

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IstB_IS21	PF01695	232 - 316	2e-07	IstB-like ATP binding protein
AAA	PF00004	240 - 375	7.7e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	403 - 439	1.5e-09	AAA+ lid domain
Bromodomain	PF00439	723 - 794	4.6e-15	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2370
AccB1I	GGYRCC	3 cut(s)	38, 71, 1086
AccI	GTMKAC	3 cut(s)	408, 989, 1305
AccII	CGCG	1 cut(s)	1832
AciI	CCGC	4 cut(s)	1084, 1832, 2085, 2602
AclI	AACGTT	1 cut(s)	1936
AclWI	GGATC	7 cut(s)	269, 465, 478, 945, 1632, 2558, 2571
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	6 cut(s)	1109, 1149, 1322, 2178, 2710, 2735
AcuI	CTGAAG	3 cut(s)	665, 1284, 1920
AcyI	GRCGYC	2 cut(s)	1087, 1766
AfaI	GTAC	5 cut(s)	742, 1737, 1960, 2433, 2726
AfeI	AGCGCT	1 cut(s)	1731
AfiI	CCNNNNNNNGG	7 cut(s)	446, 711, 712, 713, 743, 1127, 2193
AflIII	ACRYGT	1 cut(s)	2315
AgeI	ACCGGT	1 cut(s)	1955
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	7 cut(s)	277, 294, 736, 936, 1126, 1620, 2461
AleI	CACNNNNGTG	1 cut(s)	1407
AloI	GAACNNNNNNTCC	2 cut(s)	462, 494
Alw21I	GWGCWC	3 cut(s)	1422, 2137, 2542
Alw26I	GTCTC	2 cut(s)	2052, 2676
Alw44I	GTGCAC	1 cut(s)	1418
AlwI	GGATC	7 cut(s)	269, 465, 478, 945, 1632, 2558, 2571
Aor51HI	AGCGCT	1 cut(s)	1731
ApaI	GGGCCC	1 cut(s)	2462
ApaLI	GTGCAC	1 cut(s)	1418
ApoI	RAATTY	6 cut(s)	1109, 1149, 1322, 2178, 2710, 2735
ArsI	GACNNNNNNTTYG	2 cut(s)	1926, 1958
AseI	ATTAAT	1 cut(s)	755
AsiGI	ACCGGT	1 cut(s)	1955
Asp700I	GAANNNNTTC	1 cut(s)	391
AspLEI	GCGC	5 cut(s)	66, 520, 1089, 1732, 1832
AsuC2I	CCSGG	2 cut(s)	156, 1092
AsuII	TTCGAA	2 cut(s)	379, 1190
AsuNHI	GCTAGC	1 cut(s)	1217
AvaII	GGWCC	3 cut(s)	731, 2087, 2604
AxyI	CCTNAGG	1 cut(s)	1299
BaeGI	GKGCMC	3 cut(s)	1422, 1816, 2462
BaeI	ACNNNNGTAYC	2 cut(s)	1222, 1255
BalI	TGGCCA	1 cut(s)	795
BamHI	GGATCC	2 cut(s)	470, 2563
BanI	GGYRCC	3 cut(s)	38, 71, 1086
BanII	GRGCYC	1 cut(s)	2462
BarI	GAAGNNNNNNTAC	2 cut(s)	1719, 1751
BauI	CACGAG	1 cut(s)	2483
BbsI	GAAGAC	3 cut(s)	370, 755, 1980
Bbv12I	GWGCWC	3 cut(s)	1422, 2137, 2542
BcgI	CGANNNNNNTGC	4 cut(s)	2266, 2300, 2474, 2508
BciT130I	CCWGG	7 cut(s)	279, 296, 738, 938, 1128, 1622, 2463
BciVI	GTATCC	2 cut(s)	1223, 2417
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	2 cut(s)	156, 1092
BcoDI	GTCTC	2 cut(s)	2052, 2676
BfaI	CTAG	7 cut(s)	1218, 1425, 1631, 1679, 1707, 2394, 2568
BfmI	CTRYAG	4 cut(s)	578, 1457, 2285, 2444
BfoI	RGCGCY	2 cut(s)	1090, 1733
BfuI	GTATCC	2 cut(s)	1223, 2417
BglII	AGATCT	1 cut(s)	679
BlpI	GCTNAGC	1 cut(s)	836
BmcAI	AGTACT	1 cut(s)	2726
Bme1390I	CCNGG	9 cut(s)	156, 279, 296, 738, 938, 1092, 1128, 1622, 2463
Bme18I	GGWCC	3 cut(s)	731, 2087, 2604
BmgBI	CACGTC	1 cut(s)	203
BmiI	GGNNCC	9 cut(s)	40, 73, 438, 472, 942, 1088, 2070, 2460, 2565
BmrFI	CCNGG	9 cut(s)	156, 279, 296, 738, 938, 1092, 1128, 1622, 2463
BmrI	ACTGGG	2 cut(s)	470, 753
BmtI	GCTAGC	1 cut(s)	1221
BmuI	ACTGGG	2 cut(s)	470, 753
BpiI	GAAGAC	3 cut(s)	370, 755, 1980
BpmI	CTGGAG	2 cut(s)	28, 2651
Bpu10I	CCTNAGC	1 cut(s)	769
Bpu1102I	GCTNAGC	1 cut(s)	836
Bpu14I	TTCGAA	2 cut(s)	379, 1190
BpuEI	CTTGAG	2 cut(s)	228, 2481
BpuMI	CCSGG	2 cut(s)	156, 1092
BsaAI	YACGTR	1 cut(s)	2428
BsaBI	GATNNNNATC	1 cut(s)	2340
BsaHI	GRCGYC	2 cut(s)	1087, 1766
BsaI	GGTCTC	1 cut(s)	2052
BsaJI	CCNNGG	8 cut(s)	67, 710, 786, 1024, 1090, 1586, 2112, 2461
BsaWI	WCCGGW	1 cut(s)	1955
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	7 cut(s)	446, 711, 712, 713, 743, 1127, 2193
Bse118I	RCCGGY	1 cut(s)	1955
Bse1I	ACTGG	3 cut(s)	476, 748, 1660
Bse21I	CCTNAGG	1 cut(s)	1299
Bse3DI	GCAATG	1 cut(s)	992
Bse8I	GATNNNNATC	1 cut(s)	2340
BseBI	CCWGG	7 cut(s)	279, 296, 738, 938, 1128, 1622, 2463
BseDI	CCNNGG	8 cut(s)	67, 710, 786, 1024, 1090, 1586, 2112, 2461
BseJI	GATNNNNATC	1 cut(s)	2340
BseLI	CCNNNNNNNGG	7 cut(s)	446, 711, 712, 713, 743, 1127, 2193
BseMI	GCAATG	1 cut(s)	992
BseMII	CTCAG	5 cut(s)	564, 1313, 2063, 2115, 2173
BseNI	ACTGG	3 cut(s)	476, 748, 1660
BseSI	GKGCMC	3 cut(s)	1422, 1816, 2462
BseYI	CCCAGC	2 cut(s)	539, 1393
BsgI	GTGCAG	2 cut(s)	846, 2618
Bsh1236I	CGCG	1 cut(s)	1832
BshNI	GGYRCC	3 cut(s)	38, 71, 1086
BshTI	ACCGGT	1 cut(s)	1955
BsiHKAI	GWGCWC	3 cut(s)	1422, 2137, 2542
BsiSI	CCGG	4 cut(s)	155, 1092, 1542, 1956
BslFI	GGGAC	2 cut(s)	574, 2690
BslI	CCNNNNNNNGG	7 cut(s)	446, 711, 712, 713, 743, 1127, 2193
BsmAI	GTCTC	2 cut(s)	2052, 2676
BsmFI	GGGAC	2 cut(s)	574, 2690
BsmI	GAATGC	2 cut(s)	2324, 2445
Bso31I	GGTCTC	1 cut(s)	2052
Bsp119I	TTCGAA	2 cut(s)	379, 1190
Bsp120I	GGGCCC	1 cut(s)	2458
Bsp1286I	GDGCHC	5 cut(s)	1422, 1816, 2137, 2462, 2542
Bsp1720I	GCTNAGC	1 cut(s)	836
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	4 cut(s)	1084, 1832, 2085, 2602
BspCNI	CTCAG	5 cut(s)	563, 1312, 2062, 2116, 2172
BspFNI	CGCG	1 cut(s)	1832
BspLI	GGNNCC	9 cut(s)	40, 73, 438, 472, 942, 1088, 2070, 2460, 2565
BspMAI	CTGCAG	4 cut(s)	582, 1461, 2289, 2448
BspOI	GCTAGC	1 cut(s)	1221
BspPI	GGATC	7 cut(s)	269, 465, 478, 945, 1632, 2558, 2571
BspT104I	TTCGAA	2 cut(s)	379, 1190
BspT107I	GGYRCC	3 cut(s)	38, 71, 1086
BspTNI	GGTCTC	1 cut(s)	2052
BsrDI	GCAATG	1 cut(s)	992
BsrFI	RCCGGY	1 cut(s)	1955
BsrI	ACTGG	3 cut(s)	476, 748, 1660
BssAI	RCCGGY	1 cut(s)	1955
BssECI	CCNNGG	8 cut(s)	67, 710, 786, 1024, 1090, 1586, 2112, 2461
BssNI	GRCGYC	2 cut(s)	1087, 1766
BssSI	CACGAG	1 cut(s)	2483
BssT1I	CCWWGG	4 cut(s)	67, 710, 786, 2112
Bst2BI	CACGAG	1 cut(s)	2483
Bst2UI	CCWGG	7 cut(s)	279, 296, 738, 938, 1128, 1622, 2463
Bst4CI	ACNGT	7 cut(s)	119, 369, 1166, 1235, 1791, 1997, 2521
Bst6I	CTCTTC	3 cut(s)	23, 1698, 1924
BstACI	GRCGYC	2 cut(s)	1087, 1766
BstBAI	YACGTR	1 cut(s)	2428
BstBI	TTCGAA	2 cut(s)	379, 1190
BstC8I	GCNNGC	9 cut(s)	793, 959, 999, 1212, 1219, 1457, 1638, 2083, 2133
BstDEI	CTNAG	7 cut(s)	550, 769, 836, 1299, 2049, 2124, 2159
BstDSI	CCRYGG	2 cut(s)	67, 1024
BstEII	GGTNACC	1 cut(s)	1951
BstFNI	CGCG	1 cut(s)	1832
BstH2I	RGCGCY	2 cut(s)	1090, 1733
BstHHI	GCGC	5 cut(s)	66, 520, 1089, 1732, 1832
BstMAI	GTCTC	2 cut(s)	2052, 2676
BstMWI	GCNNNNNNNGC	6 cut(s)	536, 779, 788, 1426, 2596, 2635
BstNI	CCWGG	7 cut(s)	279, 296, 738, 938, 1128, 1622, 2463
BstNSI	RCATGY	1 cut(s)	2319
BstPI	GGTNACC	1 cut(s)	1951
BstSCI	CCNGG	9 cut(s)	154, 277, 294, 736, 936, 1090, 1126, 1620, 2461
BstSFI	CTRYAG	4 cut(s)	578, 1457, 2285, 2444
BstSLI	GKGCMC	3 cut(s)	1422, 1816, 2462
BstUI	CGCG	1 cut(s)	1832
BstV2I	GAAGAC	3 cut(s)	370, 755, 1980
BstX2I	RGATCY	4 cut(s)	470, 679, 950, 2563
BstYI	RGATCY	4 cut(s)	470, 679, 950, 2563
Bsu36I	CCTNAGG	1 cut(s)	1299
BsuI	GTATCC	2 cut(s)	1223, 2417
BtgI	CCRYGG	2 cut(s)	67, 1024
BtrI	CACGTC	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	1521
BtsIMutI	CAGTG	2 cut(s)	1260, 1521
Cac8I	GCNNGC	9 cut(s)	793, 959, 999, 1212, 1219, 1457, 1638, 2083, 2133
CfoI	GCGC	5 cut(s)	66, 520, 1089, 1732, 1832
Cfr10I	RCCGGY	1 cut(s)	1955
CpoI	CGGWCCG	1 cut(s)	2604
CseI	GACGC	2 cut(s)	476, 1774
Csp6I	GTAC	5 cut(s)	741, 1736, 1959, 2432, 2725
CspAI	ACCGGT	1 cut(s)	1955
CspI	CGGWCCG	1 cut(s)	2604
CviQI	GTAC	5 cut(s)	741, 1736, 1959, 2432, 2725
DdeI	CTNAG	7 cut(s)	550, 769, 836, 1299, 2049, 2124, 2159
DinI	GGCGCC	1 cut(s)	1088
DraI	TTTAAA	1 cut(s)	1248
EaeI	YGGCCR	1 cut(s)	793
Eam1104I	CTCTTC	3 cut(s)	23, 1698, 1924
EarI	CTCTTC	3 cut(s)	23, 1698, 1924
Eco130I	CCWWGG	4 cut(s)	67, 710, 786, 2112
Eco147I	AGGCCT	1 cut(s)	1585
Eco24I	GRGCYC	1 cut(s)	2462
Eco31I	GGTCTC	1 cut(s)	2052
Eco47I	GGWCC	3 cut(s)	731, 2087, 2604
Eco47III	AGCGCT	1 cut(s)	1731
Eco57I	CTGAAG	3 cut(s)	665, 1284, 1920
Eco81I	CCTNAGG	1 cut(s)	1299
Eco91I	GGTNACC	1 cut(s)	1951
EcoO109I	RGGNCCY	2 cut(s)	1634, 2459
EcoO65I	GGTNACC	1 cut(s)	1951
EcoRI	GAATTC	2 cut(s)	1109, 2178
EcoRII	CCWGG	7 cut(s)	277, 294, 736, 936, 1126, 1620, 2461
EcoT14I	CCWWGG	4 cut(s)	67, 710, 786, 2112
EcoT38I	GRGCYC	1 cut(s)	2462
EgeI	GGCGCC	1 cut(s)	1088
EheI	GGCGCC	1 cut(s)	1088
ErhI	CCWWGG	4 cut(s)	67, 710, 786, 2112
FalI	AAGNNNNNCTT	2 cut(s)	1349, 1381
FaqI	GGGAC	2 cut(s)	574, 2690
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	3 cut(s)	408, 989, 1305
FriOI	GRGCYC	1 cut(s)	2462
FspBI	CTAG	7 cut(s)	1218, 1425, 1631, 1679, 1707, 2394, 2568
GlaI	GCGC	5 cut(s)	65, 519, 1088, 1731, 1831
GsaI	CCCAGC	2 cut(s)	543, 1397
GsuI	CTGGAG	2 cut(s)	28, 2651
HaeII	RGCGCY	2 cut(s)	1090, 1733
HapII	CCGG	4 cut(s)	155, 1092, 1542, 1956
HgaI	GACGC	2 cut(s)	476, 1774
HhaI	GCGC	5 cut(s)	66, 520, 1089, 1732, 1832
Hin1I	GRCGYC	2 cut(s)	1087, 1766
Hin6I	GCGC	5 cut(s)	64, 518, 1087, 1730, 1830
HinP1I	GCGC	5 cut(s)	64, 518, 1087, 1730, 1830
HincII	GTYRAC	4 cut(s)	292, 409, 1383, 2296
HindII	GTYRAC	4 cut(s)	292, 409, 1383, 2296
HindIII	AAGCTT	1 cut(s)	1535
HinfI	GANTC	7 cut(s)	151, 512, 1019, 1340, 2102, 2120, 2297
HpaII	CCGG	4 cut(s)	155, 1092, 1542, 1956
Hpy188III	TCNNGA	9 cut(s)	45, 148, 167, 245, 677, 1016, 1106, 2483, 2561
Hpy99I	CGWCG	3 cut(s)	204, 225, 1768
HpyAV	CCTTC	8 cut(s)	200, 640, 814, 915, 1197, 1604, 2059, 2650
HpyCH4III	ACNGT	7 cut(s)	119, 369, 1166, 1235, 1791, 1997, 2521
HpyCH4IV	ACGT	4 cut(s)	202, 1892, 1936, 2427
HpyF10VI	GCNNNNNNNGC	6 cut(s)	536, 779, 788, 1426, 2596, 2635
HpyF3I	CTNAG	7 cut(s)	550, 769, 836, 1299, 2049, 2124, 2159
HpySE526I	ACGT	4 cut(s)	202, 1892, 1936, 2427
Hsp92I	GRCGYC	2 cut(s)	1087, 1766
HspAI	GCGC	5 cut(s)	64, 518, 1087, 1730, 1830
KasI	GGCGCC	1 cut(s)	1086
Ksp22I	TGATCA	1 cut(s)	424
LmnI	GCTCC	6 cut(s)	946, 1046, 1076, 1207, 2074, 2239
MaeI	CTAG	7 cut(s)	1218, 1425, 1631, 1679, 1707, 2394, 2568
MaeII	ACGT	4 cut(s)	202, 1892, 1936, 2427
MaeIII	GTNAC	9 cut(s)	8, 1286, 1951, 2311, 2448, 2480, 2515, 2524, 2615
MfeI	CAATTG	2 cut(s)	866, 1068
MflI	RGATCY	4 cut(s)	470, 679, 950, 2563
MhlI	GDGCHC	5 cut(s)	1422, 1816, 2137, 2462, 2542
MlsI	TGGCCA	1 cut(s)	795
MluNI	TGGCCA	1 cut(s)	795
Mly113I	GGCGCC	1 cut(s)	1087
MlyI	GAGTC	2 cut(s)	2111, 2291
MmeI	TCCRAC	3 cut(s)	1148, 1207, 2007
Mox20I	TGGCCA	1 cut(s)	795
MroXI	GAANNNNTTC	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	4 cut(s)	755, 1199, 1247, 2714
MslI	CAYNNNNRTG	1 cut(s)	1407
Msp20I	TGGCCA	1 cut(s)	795
MspA1I	CMGCKG	4 cut(s)	583, 1397, 2602, 2629
MspI	CCGG	4 cut(s)	155, 1092, 1542, 1956
MspR9I	CCNGG	9 cut(s)	156, 279, 296, 738, 938, 1092, 1128, 1622, 2463
MunI	CAATTG	2 cut(s)	866, 1068
Mva1269I	GAATGC	2 cut(s)	2324, 2445
MvaI	CCWGG	7 cut(s)	279, 296, 738, 938, 1128, 1622, 2463
MvnI	CGCG	1 cut(s)	1832
MwoI	GCNNNNNNNGC	6 cut(s)	536, 779, 788, 1426, 2596, 2635
NarI	GGCGCC	1 cut(s)	1087
NciI	CCSGG	2 cut(s)	156, 1092
NcoI	CCATGG	1 cut(s)	67
NheI	GCTAGC	1 cut(s)	1217
NlaIV	GGNNCC	9 cut(s)	40, 73, 438, 472, 942, 1088, 2070, 2460, 2565
NmeAIII	GCCGAG	1 cut(s)	1806
NmuCI	GTSAC	7 cut(s)	8, 1286, 1951, 2448, 2480, 2524, 2615
NspI	RCATGY	1 cut(s)	2319
NspV	TTCGAA	2 cut(s)	379, 1190
OliI	CACNNNNGTG	1 cut(s)	1407
PceI	AGGCCT	1 cut(s)	1585
PciI	ACATGT	1 cut(s)	2315
PcsI	WCGNNNNNNNCGW	1 cut(s)	1282
PctI	GAATGC	2 cut(s)	2324, 2445
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	5 cut(s)	151, 512, 1019, 1340, 2120
PflFI	GACNNNGTC	1 cut(s)	219
PinAI	ACCGGT	1 cut(s)	1955
PleI	GAGTC	2 cut(s)	2110, 2291
PluTI	GGCGCC	1 cut(s)	1090
PpsI	GAGTC	2 cut(s)	2110, 2291
Ppu21I	YACGTR	1 cut(s)	2428
PscI	ACATGT	1 cut(s)	2315
PshBI	ATTAAT	1 cut(s)	755
PsiI	TTATAA	1 cut(s)	2370
Psp1406I	AACGTT	1 cut(s)	1936
Psp6I	CCWGG	7 cut(s)	277, 294, 736, 936, 1126, 1620, 2461
PspEI	GGTNACC	1 cut(s)	1951
PspFI	CCCAGC	2 cut(s)	539, 1393
PspGI	CCWGG	7 cut(s)	277, 294, 736, 936, 1126, 1620, 2461
PspN4I	GGNNCC	9 cut(s)	40, 73, 438, 472, 942, 1088, 2070, 2460, 2565
PspOMI	GGGCCC	1 cut(s)	2458
PstI	CTGCAG	4 cut(s)	582, 1461, 2289, 2448
PsuI	RGATCY	4 cut(s)	470, 679, 950, 2563
PsyI	GACNNNGTC	1 cut(s)	219
PvuII	CAGCTG	3 cut(s)	583, 1397, 2629
RsaI	GTAC	5 cut(s)	742, 1737, 1960, 2433, 2726
RsaNI	GTAC	5 cut(s)	741, 1736, 1959, 2432, 2725
RseI	CAYNNNNRTG	1 cut(s)	1407
Rsr2I	CGGWCCG	1 cut(s)	2604
RsrII	CGGWCCG	1 cut(s)	2604
SalI	GTCGAC	1 cut(s)	407
SaqAI	TTAA	4 cut(s)	755, 1199, 1247, 2714
ScaI	AGTACT	1 cut(s)	2726
SchI	GAGTC	2 cut(s)	2111, 2291
ScrFI	CCNGG	9 cut(s)	156, 279, 296, 738, 938, 1092, 1128, 1622, 2463
SduI	GDGCHC	5 cut(s)	1422, 1816, 2137, 2462, 2542
SfcI	CTRYAG	4 cut(s)	578, 1457, 2285, 2444
SfoI	GGCGCC	1 cut(s)	1088
SfuI	TTCGAA	2 cut(s)	379, 1190
SinI	GGWCC	3 cut(s)	731, 2087, 2604
SmiMI	CAYNNNNRTG	1 cut(s)	1407
SmlI	CTYRAG	2 cut(s)	243, 2496
SmoI	CTYRAG	2 cut(s)	243, 2496
SseBI	AGGCCT	1 cut(s)	1585
SsiI	CCGC	4 cut(s)	1084, 1832, 2085, 2602
SspDI	GGCGCC	1 cut(s)	1086
SspI	AATATT	1 cut(s)	1926
SspMI	CTAG	7 cut(s)	1218, 1425, 1631, 1679, 1707, 2394, 2568
StuI	AGGCCT	1 cut(s)	1585
StyD4I	CCNGG	9 cut(s)	154, 277, 294, 736, 936, 1090, 1126, 1620, 2461
StyI	CCWWGG	4 cut(s)	67, 710, 786, 2112
TaaI	ACNGT	7 cut(s)	119, 369, 1166, 1235, 1791, 1997, 2521
TaiI	ACGT	4 cut(s)	205, 1895, 1939, 2430
TaqII	GACCGA	1 cut(s)	2621
TatI	WGTACW	1 cut(s)	2724
TauI	GCSGC	1 cut(s)	1087
TfiI	GAWTC	5 cut(s)	151, 512, 1019, 1340, 2120
Tru1I	TTAA	4 cut(s)	755, 1199, 1247, 2714
Tru9I	TTAA	4 cut(s)	755, 1199, 1247, 2714
TscAI	CASTG	2 cut(s)	1267, 1521
TseFI	GTSAC	7 cut(s)	8, 1286, 1951, 2448, 2480, 2524, 2615
Tsp45I	GTSAC	7 cut(s)	8, 1286, 1951, 2448, 2480, 2524, 2615
TspDTI	ATGAA	8 cut(s)	149, 939, 1661, 1665, 1986, 2317, 2723, 2763
TspGWI	ACGGA	1 cut(s)	1274
TspRI	CASTG	2 cut(s)	1267, 1521
Tth111I	GACNNNGTC	1 cut(s)	219
VneI	GTGCAC	1 cut(s)	1418
VpaK11BI	GGWCC	3 cut(s)	731, 2087, 2604
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	6 cut(s)	1109, 1149, 1322, 2178, 2710, 2735
XceI	RCATGY	1 cut(s)	2319
XmiI	GTMKAC	3 cut(s)	408, 989, 1305
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	7 cut(s)	1218, 1425, 1631, 1679, 1707, 2394, 2568
ZrmI	AGTACT	1 cut(s)	2726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.