Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Forward (+)

1904967 .. 1907777

Gene Structure 2811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

TTGTATTACAAGACGAGTAGCATGATGAGTGACAGAGGGAGAAGGAAGAAGAGAGGTGGTGCCTCCAGAATTGGTGAGATGATGCGCGATGGCACCGCTACTCCGATTGCCTCCCTCACTACAGGTTATGTATCAGACAGTTCCAATGACATGATGAAACCCTCTATCAAGAATCCGGGTGCATATCAAGATGCAGCATTATCACCTTACAAGCATGATCGACGTGAAGGATTGCGACCTCGTCGCTCAAACACAATTTCAACTCAAGATATAATTTTTGGATATGACAATGACGATCCCGGTAGTTCGGTTGACCAGGATATTGAATACAATGATGCGGATGAAGGTCAGAAAGATGATGGTGATGATGGAGATATTGGTGAGGGCCAAGATGGAAGAAGACGGTATCATTTTCGAAATCGAAATCGAAATCGTGCACAAGTCCAAGTCGGCAGGTTCTCTATTGATCAAGGAATGGGGCCAAAGGTCGGTAAGGATGTAAGAGAGTGTGGATCCTCAGTTCATAAGCGTCATCGAATTACAAGGACTGATGATTCTGAGCCCGACCAAGCTCAAACTGCTGGGGCTGGGCCAAGCTCAGAGGGAGGGGCAGACATACAACCTCTGCAGCTGGTTGATCATAGTGTCAGTTTTGAGGATATAGGGGGGCTTTCTCAATATATTGATGCTCTGAAGGAAATGGTTTTCTTTCCTTTACTCTACCCAGATTTCTTTGTGAGTTATCATATCACCCCACCAAGGGGTGTTTTGTTATGTGGTCCTCCTGGTACTGGGAAGACATTAATTGCCAGAGCCTTGGCCTCTGCTGCATCCAAGGCTGGCCGCAAAGTTAGTTTTTACATGAGGAAGGGTGCAGATGTACTAAGCAAGTGGGTTGGCGAGGCTGAAAGACAATTGAAACTTCTTTTTGAGGAAGCACAGAGAAATCAACCTTCAATCATATTCTTTGATGAAATAGATGGCCTGGCTCCTGTAAGATCCAGCAGACAAGAGCAAACTCATAATTCTATTGTGTCTACATTGCTTGCTCTCATGGATGGTCTTGATTCCCGTGGACAAGTGGTTTTGCTCGGAGCAACCAACCGAGTTGATGCAATTGATGGAGCTTTGCGGCGCCCGGGTAGATTTGATCGTGAATTCAACTTTCCTTTGCCTGGCTGTGAGGCCCGTGCTGAAATTTTAGACATTCACAGTCGGAAATGGAAGCATCCTCCTTCGAATGAGTTAAAATTGGAGCTTGCAGCTAGCTGTGTTGGATATTGTGGTGCTGATTTAAAGGCTCTTTGCACTGAAGCTGCCATTCGTGCTTTCCGTGAAAAATATCCTCAGGTCTACACAAGTGATGATAAATTTGTAATTGATGTTGATTTAGTAAGGGTTGAAAAGTATCACTTTGTTGAAGCCATGTCAACAATCACCCCAGCTGCTCACAGAGGTGCTGCTGTGCACTCTAGGCCATTGTCTTTAGTAGTTGCACCATGCCTGCAGAGGCATCTACAAAAAGCCATGAACTATATATCCGATATTTTCCCTCCGATTGCAGTGTCATCAGAATTGACCAAGCCTTCCGTGCTGTCTGCTTGTGGCTCTGCCATTCCTCCTGTTTATAGGCCTCGGCTTCTTCTATGTGGTGGTGAAGGTTCTGGCCTGGATCATCTCGGGCCTGCTATTTTACATGAACTCAACCAGTTTCCTGTTCATTCTCTAGGACTTGCATCTCTTCTATCTGATCCTAGTGCAAAGACACCAGAGGAAGCGCTGGTACATATATTTGGTGAAGCAAGGAGAACGACGCCATCCATTCTCTACTTGCCACAGTTCAATCTGTGGTGGGACAGGGCACATGAGCAGCTCGGTGCAGTTTTTCTGACTTTGCTACAAGAAGTTCCATCTGATTTACCTATATTACTACTTGCAACGTCATCTGAAGTTGATGCCATGACGTCTTCAATATTCTCCGAACGTTCTGTCTATCAGGTGGCCGGTATGCCATCTAATGAAGACAGATGTTTGTTTTTTGACCGTCTGATCGAAGCTGCCTTGTCAGTCTTGTTGGAGGGCAGGACTAAAAGGTCTCAGGCTGAACTTCCGAAGGCTCCAAAAGTGGCAAGCGGTCCAAAGGTGTCAGAGTTAAACGCCAATGTAGAATCTAAGCAGCGTGCTCTTTGCCTGTTGCAGATGTGCCTCAGAGATGTTTGCAATCGAATTCTATCAGATGAGAGGTTTAGTGCTTTTCACCATCCCATCTTGGATGAGGATGCTCCAAACTATCACTCAATTATCCAAAATCCTATGGATGTTGCGACCCTGCTGCAGCGTGTTGACTCTGGGCTGTATGTTACATGTAAAGCGTTCGTGGAAGATGTTGATCTTATAGTTTCCAATGCAAAGGCTTATAATGGAGATGATTACAATGGGGCTAGGATCGTTAGTAGAGCTTATGAGCTTGGATACGTGGTACATGGAATGCTGCAGTCACAGATGGGCCCTGCACTGATTGCATATTTTGACGAGATTGCTGCTCAAGGTGGCCTAGAAGATGTAACTGTTGTCACAAAGGCGAGTGCTCGACTTCGTGAGGGAAATCTGGATCCTAGCTACGAGGCACACAAGAGGCTTTTTGTGCAGCGGACCAAAACGTGTGACATTCCACAGCTTGAGAGGCTTTACGCAAGAATTATGAAGGACATTTTCAACATCAAGGACGGAGACAAAAGCGATGTAGTGCCACCTATGCATTTAATTTTCAAGTATCTGTTGCAATTTGCAGAGGATGAAGCAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

937

Amino Acids

103.61

Weight (kDa)

5.99

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IstB_IS21	PF01695	255 - 332	5.6e-07	IstB-like ATP binding protein
AAA	PF00004	256 - 391	1.1e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	419 - 455	1.4e-10	AAA+ lid domain
Bromodomain	PF00439	739 - 810	8.7e-15	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2418
AasI	GACNNNNNNGTC	1 cut(s)	2092
AatII	GACGTC	1 cut(s)	1967
Acc36I	ACCTGC	1 cut(s)	444
AccB1I	GGYRCC	3 cut(s)	59, 92, 1134
AccI	GTMKAC	2 cut(s)	1037, 1353
AccII	CGCG	1 cut(s)	87
AciI	CCGC	6 cut(s)	96, 338, 844, 1132, 2133, 2650
AclI	AACGTT	1 cut(s)	1984
AclWI	GGATC	9 cut(s)	290, 507, 520, 993, 1680, 1745, 2453, 2606, 2619
AcoI	YGGCCR	2 cut(s)	841, 2001
AcsI	RAATTY	4 cut(s)	1157, 1197, 1370, 2226
AcuI	CTGAAG	3 cut(s)	713, 1332, 1968
AcyI	GRCGYC	3 cut(s)	1135, 1814, 1964
AfaI	GTAC	4 cut(s)	790, 882, 1785, 2481
AfeI	AGCGCT	1 cut(s)	1779
AfiI	CCNNNNNNNGG	6 cut(s)	488, 759, 760, 761, 791, 1175
AflIII	ACRYGT	2 cut(s)	2363, 2660
AjiI	CACGTC	1 cut(s)	224
AjnI	CCWGG	5 cut(s)	315, 784, 984, 1174, 1668
AleI	CACNNNNGTG	1 cut(s)	1455
AloI	GAACNNNNNNTCC	4 cut(s)	504, 536, 1523, 1555
Alw21I	GWGCWC	4 cut(s)	439, 1470, 2185, 2590
Alw26I	GTCTC	2 cut(s)	2100, 2724
Alw44I	GTGCAC	2 cut(s)	435, 1466
AlwI	GGATC	9 cut(s)	290, 507, 520, 993, 1680, 1745, 2453, 2606, 2619
Ama87I	CYCGRG	2 cut(s)	1138, 1679
Aor51HI	AGCGCT	1 cut(s)	1779
ApaI	GGGCCC	1 cut(s)	2510
ApaLI	GTGCAC	2 cut(s)	435, 1466
ApoI	RAATTY	4 cut(s)	1157, 1197, 1370, 2226
ArsI	GACNNNNNNTTYG	2 cut(s)	1974, 2006
AseI	ATTAAT	1 cut(s)	803
AspLEI	GCGC	3 cut(s)	87, 1137, 1780
AsuC2I	CCSGG	4 cut(s)	177, 300, 1139, 1140
AsuHPI	GGTGA	9 cut(s)	86, 195, 374, 392, 742, 1429, 1667, 1808, 2249
AsuII	TTCGAA	2 cut(s)	415, 1238
AsuNHI	GCTAGC	1 cut(s)	1265
AvaI	CYCGRG	2 cut(s)	1138, 1679
AvaII	GGWCC	3 cut(s)	779, 2135, 2652
AxyI	CCTNAGG	1 cut(s)	1347
BaeGI	GKGCMC	4 cut(s)	439, 1470, 1864, 2510
BamHI	GGATCC	2 cut(s)	512, 2611
BanI	GGYRCC	3 cut(s)	59, 92, 1134
BanII	GRGCYC	2 cut(s)	564, 2510
BarI	GAAGNNNNNNTAC	2 cut(s)	1767, 1799
BbsI	GAAGAC	4 cut(s)	406, 803, 1959, 2028
Bbv12I	GWGCWC	4 cut(s)	439, 1470, 2185, 2590
BcgI	CGANNNNNNTGC	4 cut(s)	2314, 2348, 2522, 2556
BciT130I	CCWGG	5 cut(s)	317, 786, 986, 1176, 1670
BciVI	GTATCC	1 cut(s)	2465
BclI	TGATCA	2 cut(s)	466, 637
BcnI	CCSGG	4 cut(s)	177, 300, 1139, 1140
BcoDI	GTCTC	2 cut(s)	2100, 2724
BfaI	CTAG	7 cut(s)	1266, 1473, 1727, 1755, 2442, 2555, 2616
BfmI	CTRYAG	5 cut(s)	120, 626, 1505, 2333, 2492
BfoI	RGCGCY	2 cut(s)	1138, 1781
BfuAI	ACCTGC	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	2465
Bme1390I	CCNGG	9 cut(s)	177, 300, 317, 786, 986, 1139, 1140, 1176, 1670
Bme18I	GGWCC	3 cut(s)	779, 2135, 2652
BmeT110I	CYCGRG	2 cut(s)	1138, 1679
BmgBI	CACGTC	1 cut(s)	224
BmiI	GGNNCC	9 cut(s)	61, 94, 480, 514, 990, 1136, 2118, 2508, 2613
BmrFI	CCNGG	9 cut(s)	177, 300, 317, 786, 986, 1139, 1140, 1176, 1670
BmrI	ACTGGG	1 cut(s)	801
BmtI	GCTAGC	1 cut(s)	1269
BmuI	ACTGGG	1 cut(s)	801
BpiI	GAAGAC	4 cut(s)	406, 803, 1959, 2028
BpmI	CTGGAG	1 cut(s)	49
Bpu14I	TTCGAA	2 cut(s)	415, 1238
BpuEI	CTTGAG	3 cut(s)	249, 2529, 2699
BpuMI	CCSGG	4 cut(s)	177, 300, 1139, 1140
BsaAI	YACGTR	1 cut(s)	2476
BsaBI	GATNNNNATC	1 cut(s)	2388
BsaHI	GRCGYC	3 cut(s)	1135, 1814, 1964
BsaI	GGTCTC	1 cut(s)	2100
BsaJI	CCNNGG	6 cut(s)	758, 816, 834, 1072, 1138, 1634
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	6 cut(s)	488, 759, 760, 761, 791, 1175
Bse118I	RCCGGY	1 cut(s)	2003
Bse1I	ACTGG	2 cut(s)	796, 1708
Bse21I	CCTNAGG	1 cut(s)	1347
Bse3DI	GCAATG	1 cut(s)	1040
Bse8I	GATNNNNATC	1 cut(s)	2388
BseBI	CCWGG	5 cut(s)	317, 786, 986, 1176, 1670
BseDI	CCNNGG	6 cut(s)	758, 816, 834, 1072, 1138, 1634
BseJI	GATNNNNATC	1 cut(s)	2388
BseLI	CCNNNNNNNGG	6 cut(s)	488, 759, 760, 761, 791, 1175
BseMI	GCAATG	1 cut(s)	1040
BseMII	CTCAG	6 cut(s)	531, 549, 612, 1361, 2111, 2221
BseNI	ACTGG	2 cut(s)	796, 1708
BseSI	GKGCMC	4 cut(s)	439, 1470, 1864, 2510
BseYI	CCCAGC	3 cut(s)	581, 587, 1441
BsgI	GTGCAG	4 cut(s)	894, 1899, 2496, 2666
Bsh1236I	CGCG	1 cut(s)	87
BshNI	GGYRCC	3 cut(s)	59, 92, 1134
BsiHKAI	GWGCWC	4 cut(s)	439, 1470, 2185, 2590
BsiHKCI	CYCGRG	2 cut(s)	1138, 1679
BsiSI	CCGG	4 cut(s)	176, 300, 1139, 2004
BslFI	GGGAC	1 cut(s)	1868
BslI	CCNNNNNNNGG	6 cut(s)	488, 759, 760, 761, 791, 1175
BsmAI	GTCTC	2 cut(s)	2100, 2724
BsmFI	GGGAC	1 cut(s)	1868
BsmI	GAATGC	1 cut(s)	2493
Bso31I	GGTCTC	1 cut(s)	2100
BsoBI	CYCGRG	2 cut(s)	1138, 1679
Bsp119I	TTCGAA	2 cut(s)	415, 1238
Bsp120I	GGGCCC	1 cut(s)	2506
Bsp1286I	GDGCHC	7 cut(s)	439, 564, 1470, 1864, 2185, 2510, 2590
BspACI	CCGC	6 cut(s)	96, 338, 844, 1132, 2133, 2650
BspCNI	CTCAG	6 cut(s)	530, 550, 611, 1360, 2110, 2220
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	9 cut(s)	61, 94, 480, 514, 990, 1136, 2118, 2508, 2613
BspMAI	CTGCAG	4 cut(s)	630, 1509, 2337, 2496
BspMI	ACCTGC	1 cut(s)	444
BspOI	GCTAGC	1 cut(s)	1269
BspPI	GGATC	9 cut(s)	290, 507, 520, 993, 1680, 1745, 2453, 2606, 2619
BspT104I	TTCGAA	2 cut(s)	415, 1238
BspT107I	GGYRCC	3 cut(s)	59, 92, 1134
BspTNI	GGTCTC	1 cut(s)	2100
BsrDI	GCAATG	1 cut(s)	1040
BsrFI	RCCGGY	1 cut(s)	2003
BsrI	ACTGG	2 cut(s)	796, 1708
BssAI	RCCGGY	1 cut(s)	2003
BssECI	CCNNGG	6 cut(s)	758, 816, 834, 1072, 1138, 1634
BssNI	GRCGYC	3 cut(s)	1135, 1814, 1964
BssT1I	CCWWGG	3 cut(s)	758, 816, 834
Bst2UI	CCWGG	5 cut(s)	317, 786, 986, 1176, 1670
Bst4CI	ACNGT	6 cut(s)	140, 405, 1214, 1839, 2045, 2569
Bst6I	CTCTTC	2 cut(s)	44, 1746
BstACI	GRCGYC	3 cut(s)	1135, 1814, 1964
BstAPI	GCANNNNNTGC	1 cut(s)	2519
BstBAI	YACGTR	1 cut(s)	2476
BstBI	TTCGAA	2 cut(s)	415, 1238
BstC8I	GCNNGC	8 cut(s)	841, 1047, 1260, 1267, 1505, 1686, 2131, 2181
BstDEI	CTNAG	8 cut(s)	517, 558, 598, 884, 1347, 2097, 2172, 2207
BstDSI	CCRYGG	1 cut(s)	1072
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	2 cut(s)	1138, 1781
BstHHI	GCGC	3 cut(s)	87, 1137, 1780
BstMAI	GTCTC	2 cut(s)	2100, 2724
BstNI	CCWGG	5 cut(s)	317, 786, 986, 1176, 1670
BstNSI	RCATGY	1 cut(s)	2367
BstSCI	CCNGG	9 cut(s)	175, 298, 315, 784, 984, 1137, 1138, 1174, 1668
BstSFI	CTRYAG	5 cut(s)	120, 626, 1505, 2333, 2492
BstSLI	GKGCMC	4 cut(s)	439, 1470, 1864, 2510
BstUI	CGCG	1 cut(s)	87
BstV2I	GAAGAC	4 cut(s)	406, 803, 1959, 2028
BstX2I	RGATCY	3 cut(s)	512, 998, 2611
BstXI	CCANNNNNNTGG	1 cut(s)	817
BstYI	RGATCY	3 cut(s)	512, 998, 2611
Bsu36I	CCTNAGG	1 cut(s)	1347
BsuI	GTATCC	1 cut(s)	2465
BtgI	CCRYGG	1 cut(s)	1072
BtgZI	GCGATG	2 cut(s)	102, 2754
BtrI	CACGTC	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	1569
BtsIMutI	CAGTG	3 cut(s)	1308, 1569, 2513
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	8 cut(s)	841, 1047, 1260, 1267, 1505, 1686, 2131, 2181
CfoI	GCGC	3 cut(s)	87, 1137, 1780
Cfr10I	RCCGGY	1 cut(s)	2003
Cfr9I	CCCGGG	1 cut(s)	1138
CseI	GACGC	2 cut(s)	518, 1822
Csp6I	GTAC	4 cut(s)	789, 881, 1784, 2480
CviQI	GTAC	4 cut(s)	789, 881, 1784, 2480
DdeI	CTNAG	8 cut(s)	517, 558, 598, 884, 1347, 2097, 2172, 2207
DinI	GGCGCC	1 cut(s)	1136
DraI	TTTAAA	1 cut(s)	1296
DrdI	GACNNNNNNGTC	1 cut(s)	2092
DseDI	GACNNNNNNGTC	1 cut(s)	2092
EaeI	YGGCCR	2 cut(s)	841, 2001
Eam1104I	CTCTTC	2 cut(s)	44, 1746
EarI	CTCTTC	2 cut(s)	44, 1746
Eco130I	CCWWGG	3 cut(s)	758, 816, 834
Eco147I	AGGCCT	1 cut(s)	1633
Eco24I	GRGCYC	2 cut(s)	564, 2510
Eco31I	GGTCTC	1 cut(s)	2100
Eco47I	GGWCC	3 cut(s)	779, 2135, 2652
Eco47III	AGCGCT	1 cut(s)	1779
Eco57I	CTGAAG	3 cut(s)	713, 1332, 1968
Eco81I	CCTNAGG	1 cut(s)	1347
Eco88I	CYCGRG	2 cut(s)	1138, 1679
EcoO109I	RGGNCCY	1 cut(s)	2507
EcoRI	GAATTC	2 cut(s)	1157, 2226
EcoRII	CCWGG	5 cut(s)	315, 784, 984, 1174, 1668
EcoT14I	CCWWGG	3 cut(s)	758, 816, 834
EcoT22I	ATGCAT	1 cut(s)	2760
EcoT38I	GRGCYC	2 cut(s)	564, 2510
EgeI	GGCGCC	1 cut(s)	1136
EheI	GGCGCC	1 cut(s)	1136
ErhI	CCWWGG	3 cut(s)	758, 816, 834
FalI	AAGNNNNNCTT	2 cut(s)	1397, 1429
FaqI	GGGAC	1 cut(s)	1868
FbaI	TGATCA	2 cut(s)	466, 637
FblI	GTMKAC	2 cut(s)	1037, 1353
FriOI	GRGCYC	2 cut(s)	564, 2510
FspBI	CTAG	7 cut(s)	1266, 1473, 1727, 1755, 2442, 2555, 2616
GlaI	GCGC	3 cut(s)	86, 1136, 1779
GsaI	CCCAGC	3 cut(s)	585, 591, 1445
GsuI	CTGGAG	1 cut(s)	49
HaeII	RGCGCY	2 cut(s)	1138, 1781
HapII	CCGG	4 cut(s)	176, 300, 1139, 2004
HgaI	GACGC	2 cut(s)	518, 1822
HhaI	GCGC	3 cut(s)	87, 1137, 1780
Hin1I	GRCGYC	3 cut(s)	1135, 1814, 1964
Hin6I	GCGC	3 cut(s)	85, 1135, 1778
HinP1I	GCGC	3 cut(s)	85, 1135, 1778
HincII	GTYRAC	3 cut(s)	313, 1431, 2344
HindII	GTYRAC	3 cut(s)	313, 1431, 2344
HinfI	GANTC	5 cut(s)	172, 554, 1067, 2168, 2345
HpaII	CCGG	4 cut(s)	176, 300, 1139, 2004
HphI	GGTGA	9 cut(s)	86, 195, 374, 392, 742, 1429, 1667, 1808, 2249
Hpy166II	GTNNAC	8 cut(s)	313, 437, 1038, 1076, 1354, 1431, 1468, 2344
Hpy188III	TCNNGA	8 cut(s)	66, 169, 188, 266, 1064, 1154, 2597, 2609
Hpy8I	GTNNAC	8 cut(s)	313, 437, 1038, 1076, 1354, 1431, 1468, 2344
Hpy99I	CGWCG	3 cut(s)	225, 246, 1816
HpyCH4III	ACNGT	6 cut(s)	140, 405, 1214, 1839, 2045, 2569
HpyCH4IV	ACGT	6 cut(s)	223, 1940, 1964, 1984, 2475, 2660
HpyF3I	CTNAG	8 cut(s)	517, 558, 598, 884, 1347, 2097, 2172, 2207
HpySE526I	ACGT	6 cut(s)	223, 1940, 1964, 1984, 2475, 2660
Hsp92I	GRCGYC	3 cut(s)	1135, 1814, 1964
HspAI	GCGC	3 cut(s)	85, 1135, 1778
KasI	GGCGCC	1 cut(s)	1134
Ksp22I	TGATCA	2 cut(s)	466, 637
LmnI	GCTCC	6 cut(s)	994, 1094, 1124, 1255, 2122, 2287
MaeI	CTAG	7 cut(s)	1266, 1473, 1727, 1755, 2442, 2555, 2616
MaeII	ACGT	6 cut(s)	223, 1940, 1964, 1984, 2475, 2660
MaeIII	GTNAC	6 cut(s)	29, 2359, 2496, 2563, 2572, 2663
MfeI	CAATTG	2 cut(s)	914, 1116
MflI	RGATCY	3 cut(s)	512, 998, 2611
MhlI	GDGCHC	7 cut(s)	439, 564, 1470, 1864, 2185, 2510, 2590
Mly113I	GGCGCC	1 cut(s)	1135
MlyI	GAGTC	1 cut(s)	2339
MmeI	TCCRAC	3 cut(s)	1196, 1255, 2055
Mph1103I	ATGCAT	1 cut(s)	2760
MseI	TTAA	5 cut(s)	803, 1247, 1295, 2153, 2762
MslI	CAYNNNNRTG	1 cut(s)	1455
MspA1I	CMGCKG	3 cut(s)	631, 1445, 2650
MspI	CCGG	4 cut(s)	176, 300, 1139, 2004
MspR9I	CCNGG	9 cut(s)	177, 300, 317, 786, 986, 1139, 1140, 1176, 1670
MunI	CAATTG	2 cut(s)	914, 1116
Mva1269I	GAATGC	1 cut(s)	2493
MvaI	CCWGG	5 cut(s)	317, 786, 986, 1176, 1670
MvnI	CGCG	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	1135
NciI	CCSGG	4 cut(s)	177, 300, 1139, 1140
NheI	GCTAGC	1 cut(s)	1265
NlaIV	GGNNCC	9 cut(s)	61, 94, 480, 514, 990, 1136, 2118, 2508, 2613
NmeAIII	GCCGAG	1 cut(s)	1615
NmuCI	GTSAC	4 cut(s)	29, 2496, 2572, 2663
NsiI	ATGCAT	1 cut(s)	2760
NspI	RCATGY	1 cut(s)	2367
NspV	TTCGAA	2 cut(s)	415, 1238
OliI	CACNNNNGTG	1 cut(s)	1455
PceI	AGGCCT	1 cut(s)	1633
PciI	ACATGT	1 cut(s)	2363
PcsI	WCGNNNNNNNCGW	1 cut(s)	1330
PctI	GAATGC	1 cut(s)	2493
PfeI	GAWTC	4 cut(s)	172, 554, 1067, 2168
PflFI	GACNNNGTC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	2339
PluTI	GGCGCC	1 cut(s)	1138
PpsI	GAGTC	1 cut(s)	2339
Ppu21I	YACGTR	1 cut(s)	2476
PscI	ACATGT	1 cut(s)	2363
PshBI	ATTAAT	1 cut(s)	803
PsiI	TTATAA	1 cut(s)	2418
Psp1406I	AACGTT	1 cut(s)	1984
Psp6I	CCWGG	5 cut(s)	315, 784, 984, 1174, 1668
PspFI	CCCAGC	3 cut(s)	581, 587, 1441
PspGI	CCWGG	5 cut(s)	315, 784, 984, 1174, 1668
PspN4I	GGNNCC	9 cut(s)	61, 94, 480, 514, 990, 1136, 2118, 2508, 2613
PspOMI	GGGCCC	1 cut(s)	2506
PstI	CTGCAG	4 cut(s)	630, 1509, 2337, 2496
PsuI	RGATCY	3 cut(s)	512, 998, 2611
PsyI	GACNNNGTC	1 cut(s)	240
PvuII	CAGCTG	2 cut(s)	631, 1445
RsaI	GTAC	4 cut(s)	790, 882, 1785, 2481
RsaNI	GTAC	4 cut(s)	789, 881, 1784, 2480
RseI	CAYNNNNRTG	1 cut(s)	1455
SaqAI	TTAA	5 cut(s)	803, 1247, 1295, 2153, 2762
SchI	GAGTC	1 cut(s)	2339
ScrFI	CCNGG	9 cut(s)	177, 300, 317, 786, 986, 1139, 1140, 1176, 1670
SduI	GDGCHC	7 cut(s)	439, 564, 1470, 1864, 2185, 2510, 2590
SfcI	CTRYAG	5 cut(s)	120, 626, 1505, 2333, 2492
SfoI	GGCGCC	1 cut(s)	1136
SfuI	TTCGAA	2 cut(s)	415, 1238
SinI	GGWCC	3 cut(s)	779, 2135, 2652
SmaI	CCCGGG	1 cut(s)	1140
SmiMI	CAYNNNNRTG	1 cut(s)	1455
SmlI	CTYRAG	3 cut(s)	264, 2544, 2678
SmoI	CTYRAG	3 cut(s)	264, 2544, 2678
SseBI	AGGCCT	1 cut(s)	1633
SsiI	CCGC	6 cut(s)	96, 338, 844, 1132, 2133, 2650
SspDI	GGCGCC	1 cut(s)	1134
SspI	AATATT	1 cut(s)	1974
SspMI	CTAG	7 cut(s)	1266, 1473, 1727, 1755, 2442, 2555, 2616
StuI	AGGCCT	1 cut(s)	1633
StyD4I	CCNGG	9 cut(s)	175, 298, 315, 784, 984, 1137, 1138, 1174, 1668
StyI	CCWWGG	3 cut(s)	758, 816, 834
TaaI	ACNGT	6 cut(s)	140, 405, 1214, 1839, 2045, 2569
TaiI	ACGT	6 cut(s)	226, 1943, 1967, 1987, 2478, 2663
TaqI	TCGA	9 cut(s)	220, 415, 421, 427, 535, 1238, 2052, 2224, 2590
TatI	WGTACW	1 cut(s)	880
TauI	GCSGC	2 cut(s)	846, 1135
TfiI	GAWTC	4 cut(s)	172, 554, 1067, 2168
Tru1I	TTAA	5 cut(s)	803, 1247, 1295, 2153, 2762
Tru9I	TTAA	5 cut(s)	803, 1247, 1295, 2153, 2762
TscAI	CASTG	3 cut(s)	1315, 1569, 2520
TseFI	GTSAC	4 cut(s)	29, 2496, 2572, 2663
Tsp45I	GTSAC	4 cut(s)	29, 2496, 2572, 2663
TspGWI	ACGGA	3 cut(s)	1322, 1579, 2742
TspMI	CCCGGG	1 cut(s)	1138
TspRI	CASTG	3 cut(s)	1315, 1569, 2520
Tth111I	GACNNNGTC	1 cut(s)	240
VneI	GTGCAC	2 cut(s)	435, 1466
VpaK11BI	GGWCC	3 cut(s)	779, 2135, 2652
VspI	ATTAAT	1 cut(s)	803
XapI	RAATTY	4 cut(s)	1157, 1197, 1370, 2226
XceI	RCATGY	1 cut(s)	2367
XmaI	CCCGGG	1 cut(s)	1138
XmiI	GTMKAC	2 cut(s)	1037, 1353
XspI	CTAG	7 cut(s)	1266, 1473, 1727, 1755, 2442, 2555, 2616
ZraI	GACGTC	1 cut(s)	1965
Zsp2I	ATGCAT	1 cut(s)	2760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.