Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Forward (+)

27269277 .. 27275956

Gene Structure 6680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3657 bp

ATGCATCCGAAGCGATCGGATGGGTCGCCGGCGGCATTACGGAGCAGCGGGCGGATCAGCCGGCGTCCGAAAACTTACTCGCGAAGCATGTTCTATTACAACACGAGTACCAGTAGCATGATTCACAAACGCAGAAGGAAGGCCAAGACCAAGAACCGACCTGCCGCCTCCAGAATTGCTAAGATGATGCGCGATGGCTCCACTCGTTCCCAAAGATCGCCCCACCCCACTTCTCCCACTAAGCTCAATACAAACTTACCCCGCCGCTCCGAAAGAAGGAGAACTCTATCGGTAAAGAATCCAGATTATGCATCAGACAGTTCCGATGGTGATGAAGACATGATGAAACCCTCTACATGTAAATCTATCAAGAATCGGGGTGCATATCAAGATGAATTATCACCTTCCAAGCACAAAAAGATGGTGGAGAGACCAACACCTCGGCGTGAAGGATTGCGCCCTCGTCGCTCTAAGACTATTTCAAATGAGGATATGCTTTTTGGATATGACGATCTTCCTGTTGATAGTTCGGAAGAGAAGGTTGACCAAGAAGAAACCGAAAATGGGCAGGATATTGAATACAATGATGCAGATGATGGTCAGATTGAGGGCGATGGTGAAGACATGGGTGACGATGATGGAGATGAAGATGGTGATGAAGATGGTGATGATGATGGTGATGATGAAGAGGGCGAAGAGGAACAAGATGGAAGAAGACGTTATGATCTTCGAAATCGTGCAGAAGTCCGCAGGTTCTCTATTGAAGAAGGTAAGCGGAGACCACGATCTCCTCGAAGAGTATTGCACCAGGGAATGGGGCCAAAGGTCAGTAGGGATGTGAGAAAGGGTGGATCACGAGTTCATAAGCGACATCGAATCACAAGGACTGATGATTCTGATGACTCCCTTCTTGTGGATGAGCTCGACCAAGGCCCTGCAATTCCTTGGGGGAAAGGTGGGAGCAGATCTGGACCACCTTGGCTTTTTGGGGGACTAGACATGCATGGAACAACGACATGGGGTTTGAATGTTGCTGCCTCGGGTTGGGGTCACCAGGGTGATGCTTTTGCTACCTTGACTTCTGGAATTCAAACTGCTGGGCCAAGCTCAAAGGGAGGGGCAGACATACAACCTTTGCAGGTTGATGATAGTGTCAGTTTTGAGGATATAGGGGGACTTTCTCAATATATTGATGCTTTGAAGGAAATGGTTTTCTTTCCTTTACTGTATCCAGATTTCTTTGCAAGCTATCATATCACCCCACCAAGGGGAGTTTTGTTATGTGGTCCTCCTGGTACTGGGAAAACATTAATTGCCAGAGCCTTAGCCTCTGCTGCATCCAAGGCTGGCCAGAAAGTGAGTTTTTACATGAGGAAGGGTGCAGATGTCCTAAGCAAGTGGGTTGGCGAGGCTGAAAGACAATTGAAACTTCTTTTTGAGGAAGCACAAAGAAATCAACCTTCAATCATATTCTTTGATGAAATAGATGGACTGGCTCCTGTAAGATCCAGCAAACAAGAGCAAATTCATAATTCTATTGTGTCTACATTGCTTGCTCTGATGGATGGTCTTGATTCCCGTGGACAAGTGGTTTTGATCGGAGCAACCAACCGAATTGATGCAATTGATGGAGCTTTGCGGCGCCCTGGTAGATTTGATCGTGAATTCAACTTTCCTTTGCCTGGCTGTGAGGCCCGTGCTGAAATTTTAGACATTCACAGTCGGAAATGGAAGCATCCTCCTTCAAATGAGTTAAAACTGGAGCTTGCAGCTAGCTGTGTTGGATATTGTGGTGCTGATTTAAAGGCTCTTTGCACTGAAGCTGCTATTCGTGCTTTCCGTGAAAAATATCCTCAGGTCTACACAAGTGATGATAAATTTGTAATTGATGTTGATTCAGTAAGGGTTGAAAAGTATCACTTTGTTGAAGCCATGTCAACAATCACCCCAGCTGCTCACAGAGGTGCTGTTGTGCACTCTAGGCCATTGTCTTTAGTAGTTGCACCATGCCTGCAGAGGCATCTCCAAAGAGCCATGAACTATATATCCGATATTTTCCCTCCGATTGCAGTGTCATCAGAATTGACCAAGCTTTCCATGCTCTCTTGTGGCTCTGCCATTCCTCTTGTTTATAGGCCTCGGCTTCTTCTATGTGGTGGTGAAGGTTCTGGCCTGGATCATCTTGGGCCTGCTATTTTACATGAACTCGAGAAGTTTCCTGTCCATTCTCTAGGACTTCCATCTCTTCTATCTGATCCTAGTGCAAAGACACCCGAGGAAGCATTGGTACATATATTTGGTGAAGCAAGGAGGACGACGCCATCAATTCTCTACTTGCCACAGTTCAATCTGTGGTGGGAGACGGCACATGAGCAGCTCCGTGCAGTTTTGCTGACATTGCTAGAAGAATTTCCATCTGATTTACCTATATTACTACTTGCAACCTCATCAGTGCCACCTGCTGAAGTTGATGCTATGACCTCTTCAATATTCTCCGAACGTTCTGTCTATCAGGTGGATACACCTTCTACTGAAGACAGATCATTGTTTTTTGACCGTCTGATTGAAGCTGCCTTGTCAGTCTTGTTGGAGGGCACAACTAAAAGGTCTCAGGAATCAGTATCTGTTCCTGAACTTCCAAAGGCTCCAAAAGTGGCAAGTGGTCCAAAGGTGTCAGAGTTAAAAGCCAAGGTAGAAGCTGAGCAGCATGCTCTTCGCCGATTGCGGATGTGCCTCAGAGATGTTTGCAATAGAATTCTATACGATAAGAGGTTTAGTGCTTTTCACTATCCTGTCTTGGATGAGGATGCTCCAAACTATCGCTCAATTATCCAAAATCCTATGGATGTTGCAACTCTGCTGCAGCGTGTTGACTCTGGGCTGTATATTACATGCTCAGCATTCCTGCAAGATGTTGATCTTATAGTTTCTAATGCAAAGGCTTATAATGGAGATGATTACAATGGTGCTAGGATTGTTAGTAGAGGTTATGAGCTTCGAGATGCCGTACATGGAATGCTGTCACAGATGGACCCTGCACTGATTGCATATTGTGACAAGATTGCTGCTCAAGGTGGTCCAGAACAAATACCTGAAGATTTAGGGGTAGCTACTTTTCCATCAATACCTGTTGTACAGCTGGGAACTGTCACTAGGGCGAGTGCTCGACTTCGTAATGTGCAGCCGGAGGTAAATCTGGATCATAGCTACGAGGCACACAAACGGCCGAAGAAGAATATTGATGCCCCACCTGCAGCTTCAACAGCAGAAGACAAGTCACAGCATCAAGGTTCTGTACTGTCCACGTCATCTCAGGAACCCGAGACGAATAACACAGATCTTGGAGTGCCAGAAACCTCTTCTGTTGTTCCCAATCAGCTTGAAACTTCTGAAGTAGTAGAAGTTTCTGGCCATGCTGATGCGAGTGGATCTGAAGACCTCAAGATGTTAGATGGTGAGATTACAAACCAAATGGAGTCTGTCAAGCGGCTTTTTGTGGAGCGGACCAAAACTTATGACATTCCACAGCTTGAGAGGCTTTATGCAAGAATTATGAAGGGCATTTTCGACATCAAGGACAAAAGCGATATGGATGGCACCAAGCATTTAATTTTGAAGTATTTGTTGAAATTTGCAGAGGATGAAGCAAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

1218

Amino Acids

135.08

Weight (kDa)

5.81

Isoelectric Point (pI)

57.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IstB_IS21	PF01695	423 - 507	3.6e-07	IstB-like ATP binding protein
AAA	PF00004	425 - 560	4.9e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	588 - 624	1.8e-10	AAA+ lid domain
Bromodomain	PF00439	916 - 986	2e-13	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2946
AarI	CACCTGC	2 cut(s)	2467, 3259
Acc36I	ACCTGC	5 cut(s)	169, 741, 1129, 2467, 3259
AccB1I	GGYRCC	2 cut(s)	1641, 3596
AccB7I	CCANNNNNTGG	1 cut(s)	814
AccBSI	CCGCTC	2 cut(s)	267, 3502
AccI	GTMKAC	2 cut(s)	1544, 1860
AccII	CGCG	2 cut(s)	82, 192
AclI	AACGTT	1 cut(s)	2500
AclWI	GGATC	7 cut(s)	62, 859, 1500, 2184, 2249, 3207, 3436
AcoI	YGGCCR	3 cut(s)	1348, 3224, 3409
AcsI	RAATTY	9 cut(s)	1086, 1524, 1664, 1704, 1877, 2408, 2754, 3629, 3649
AcuI	CTGAAG	6 cut(s)	1839, 2484, 2553, 3114, 3411, 3453
AcyI	GRCGYC	3 cut(s)	64, 1642, 2318
AfaI	GTAC	6 cut(s)	109, 1297, 2289, 3009, 3135, 3297
AflIII	ACRYGT	1 cut(s)	356
AjiI	CACGTC	1 cut(s)	3306
AjnI	CCWGG	6 cut(s)	807, 1053, 1291, 1645, 1681, 2172
AleI	CACNNNNGTG	2 cut(s)	1056, 1962
AloI	GAACNNNNNNTCC	4 cut(s)	843, 875, 2030, 2062
Alw21I	GWGCWC	3 cut(s)	924, 1977, 3166
Alw26I	GTCTC	5 cut(s)	424, 772, 2354, 2613, 3317
Alw44I	GTGCAC	1 cut(s)	1973
AlwI	GGATC	7 cut(s)	62, 859, 1500, 2184, 2249, 3207, 3436
AlwNI	CAGNNNCTG	1 cut(s)	2624
Ama87I	CYCGRG	4 cut(s)	1039, 2207, 2273, 3320
ApaLI	GTGCAC	1 cut(s)	1973
ApoI	RAATTY	9 cut(s)	1086, 1524, 1664, 1704, 1877, 2408, 2754, 3629, 3649
ArsI	GACNNNNNNTTYG	4 cut(s)	1006, 1038, 2490, 2522
AseI	ATTAAT	1 cut(s)	1310
Asp700I	GAANNNNTTC	1 cut(s)	2409
AspLEI	GCGC	3 cut(s)	192, 459, 1644
AsuII	TTCGAA	1 cut(s)	730
AsuNHI	GCTAGC	1 cut(s)	1772
AvaI	CYCGRG	4 cut(s)	1039, 2207, 2273, 3320
AvaII	GGWCC	6 cut(s)	971, 1286, 2663, 3031, 3077, 3504
AxyI	CCTNAGG	1 cut(s)	1854
BaeGI	GKGCMC	2 cut(s)	1977, 2597
BaeI	ACNNNNGTAYC	2 cut(s)	91, 124
BalI	TGGCCA	2 cut(s)	1350, 3411
BanI	GGYRCC	2 cut(s)	1641, 3596
BanII	GRGCYC	1 cut(s)	924
BarI	GAAGNNNNNNTAC	2 cut(s)	2271, 2303
BauI	CACGAG	2 cut(s)	103, 855
BbsI	GAAGAC	6 cut(s)	342, 627, 721, 2541, 3276, 3441
Bbv12I	GWGCWC	3 cut(s)	924, 1977, 3166
BceAI	ACGGC	3 cut(s)	2379, 2990, 3239
BcgI	CGANNNNNNTGC	2 cut(s)	2696, 2730
BciT130I	CCWGG	6 cut(s)	809, 1055, 1293, 1647, 1683, 2174
BciVI	GTATCC	2 cut(s)	1239, 2512
BcoDI	GTCTC	5 cut(s)	424, 772, 2354, 2613, 3317
BfaI	CTAG	8 cut(s)	995, 1773, 1980, 2231, 2259, 2402, 2970, 3153
BfmI	CTRYAG	3 cut(s)	2012, 2861, 3252
BfoI	RGCGCY	1 cut(s)	1645
BfuAI	ACCTGC	5 cut(s)	169, 741, 1129, 2467, 3259
BfuI	GTATCC	2 cut(s)	1239, 2512
BglII	AGATCT	2 cut(s)	965, 3337
BlpI	GCTNAGC	2 cut(s)	2700, 2896
Bme1390I	CCNGG	6 cut(s)	809, 1055, 1293, 1647, 1683, 2174
Bme18I	GGWCC	6 cut(s)	971, 1286, 2663, 3031, 3077, 3504
BmeT110I	CYCGRG	4 cut(s)	1039, 2207, 2273, 3320
BmgBI	CACGTC	1 cut(s)	3306
BmiI	GGNNCC	8 cut(s)	199, 819, 1497, 1643, 2646, 3033, 3318, 3598
BmrFI	CCNGG	6 cut(s)	809, 1055, 1293, 1647, 1683, 2174
BmrI	ACTGGG	1 cut(s)	1308
BmtI	GCTAGC	1 cut(s)	1776
BmuI	ACTGGG	1 cut(s)	1308
BpiI	GAAGAC	6 cut(s)	342, 627, 721, 2541, 3276, 3441
BpmI	CTGGAG	2 cut(s)	154, 1781
Bpu10I	CCTNAGC	2 cut(s)	1324, 1391
Bpu1102I	GCTNAGC	2 cut(s)	2700, 2896
Bpu14I	TTCGAA	1 cut(s)	730
BpuEI	CTTGAG	3 cut(s)	3054, 3425, 3551
BsaBI	GATNNNNATC	1 cut(s)	2916
BsaHI	GRCGYC	3 cut(s)	64, 1642, 2318
BsaI	GGTCTC	3 cut(s)	424, 772, 2613
Bse118I	RCCGGY	2 cut(s)	28, 60
Bse1I	ACTGG	4 cut(s)	111, 1303, 1497, 1764
Bse21I	CCTNAGG	1 cut(s)	1854
Bse3DI	GCAATG	2 cut(s)	1547, 2396
Bse8I	GATNNNNATC	1 cut(s)	2916
BseBI	CCWGG	6 cut(s)	809, 1055, 1293, 1647, 1683, 2174
BseJI	GATNNNNATC	1 cut(s)	2916
BseMI	GCAATG	2 cut(s)	1547, 2396
BseMII	CTCAG	6 cut(s)	1868, 2624, 2691, 2749, 2910, 3326
BseNI	ACTGG	4 cut(s)	111, 1303, 1497, 1764
BseRI	GAGGAG	1 cut(s)	780
BseSI	GKGCMC	2 cut(s)	1977, 2597
BseX3I	CGGCCG	1 cut(s)	3224
BseYI	CCCAGC	3 cut(s)	1097, 1948, 3139
BsgI	GTGCAG	5 cut(s)	759, 1401, 2403, 3021, 3200
Bsh1236I	CGCG	2 cut(s)	82, 192
Bsh1285I	CGRYCG	2 cut(s)	17, 3227
BshNI	GGYRCC	2 cut(s)	1641, 3596
BsiEI	CGRYCG	2 cut(s)	17, 3227
BsiHKAI	GWGCWC	3 cut(s)	924, 1977, 3166
BsiHKCI	CYCGRG	4 cut(s)	1039, 2207, 2273, 3320
BsiSI	CCGG	3 cut(s)	29, 61, 3185
BslFI	GGGAC	2 cut(s)	1005, 1188
BsmAI	GTCTC	5 cut(s)	424, 772, 2354, 2613, 3317
BsmBI	CGTCTC	2 cut(s)	2354, 3317
BsmFI	GGGAC	2 cut(s)	1005, 1188
BsmI	GAATGC	2 cut(s)	2900, 3021
Bso31I	GGTCTC	3 cut(s)	424, 772, 2613
BsoBI	CYCGRG	4 cut(s)	1039, 2207, 2273, 3320
Bsp119I	TTCGAA	1 cut(s)	730
Bsp1286I	GDGCHC	4 cut(s)	924, 1977, 2597, 3166
Bsp1407I	TGTACA	1 cut(s)	3133
Bsp1720I	GCTNAGC	2 cut(s)	2700, 2896
Bsp68I	TCGCGA	1 cut(s)	82
BspCNI	CTCAG	6 cut(s)	1867, 2623, 2692, 2748, 2909, 3325
BspFNI	CGCG	2 cut(s)	82, 192
BspLI	GGNNCC	8 cut(s)	199, 819, 1497, 1643, 2646, 3033, 3318, 3598
BspMAI	CTGCAG	3 cut(s)	2016, 2865, 3256
BspMI	ACCTGC	5 cut(s)	169, 741, 1129, 2467, 3259
BspOI	GCTAGC	1 cut(s)	1776
BspPI	GGATC	7 cut(s)	62, 859, 1500, 2184, 2249, 3207, 3436
BspQI	GCTCTTC	1 cut(s)	2718
BspT104I	TTCGAA	1 cut(s)	730
BspT107I	GGYRCC	2 cut(s)	1641, 3596
BspTNI	GGTCTC	3 cut(s)	424, 772, 2613
BsrBI	CCGCTC	2 cut(s)	267, 3502
BsrDI	GCAATG	2 cut(s)	1547, 2396
BsrFI	RCCGGY	2 cut(s)	28, 60
BsrGI	TGTACA	1 cut(s)	3133
BsrI	ACTGG	4 cut(s)	111, 1303, 1497, 1764
BssAI	RCCGGY	2 cut(s)	28, 60
BssNI	GRCGYC	3 cut(s)	64, 1642, 2318
BssSI	CACGAG	2 cut(s)	103, 855
BssT1I	CCWWGG	6 cut(s)	928, 944, 977, 1265, 1341, 2688
Bst2BI	CACGAG	2 cut(s)	103, 855
Bst2UI	CCWGG	6 cut(s)	809, 1055, 1293, 1647, 1683, 2174
Bst4CI	ACNGT	7 cut(s)	320, 1227, 1721, 2343, 2558, 3148, 3300
Bst6I	CTCTTC	8 cut(s)	528, 681, 690, 790, 2250, 2488, 2718, 3364
BstACI	GRCGYC	3 cut(s)	64, 1642, 2318
BstAPI	GCANNNNNTGC	1 cut(s)	3044
BstAUI	TGTACA	1 cut(s)	3133
BstBI	TTCGAA	1 cut(s)	730
BstDSI	CCRYGG	1 cut(s)	1579
BstEII	GGTNACC	1 cut(s)	1049
BstFNI	CGCG	2 cut(s)	82, 192
BstH2I	RGCGCY	1 cut(s)	1645
BstHHI	GCGC	3 cut(s)	192, 459, 1644
BstMAI	GTCTC	5 cut(s)	424, 772, 2354, 2613, 3317
BstMCI	CGRYCG	2 cut(s)	17, 3227
BstNI	CCWGG	6 cut(s)	809, 1055, 1293, 1647, 1683, 2174
BstNSI	RCATGY	5 cut(s)	91, 360, 1003, 2711, 2895
BstPI	GGTNACC	1 cut(s)	1049
BstSCI	CCNGG	6 cut(s)	807, 1053, 1291, 1645, 1681, 2172
BstSFI	CTRYAG	3 cut(s)	2012, 2861, 3252
BstSLI	GKGCMC	2 cut(s)	1977, 2597
BstUI	CGCG	2 cut(s)	82, 192
BstV2I	GAAGAC	6 cut(s)	342, 627, 721, 2541, 3276, 3441
BstX2I	RGATCY	4 cut(s)	965, 1505, 3337, 3428
BstYI	RGATCY	4 cut(s)	965, 1505, 3337, 3428
BstZI	CGGCCG	1 cut(s)	3224
Bsu36I	CCTNAGG	1 cut(s)	1854
BsuI	GTATCC	2 cut(s)	1239, 2512
BtgI	CCRYGG	1 cut(s)	1579
BtgZI	GCGATG	2 cut(s)	207, 627
BtrI	CACGTC	1 cut(s)	3306
BtsI	GCAGTG	1 cut(s)	2076
BtsIMutI	CAGTG	4 cut(s)	1815, 2076, 2457, 3038
BtuMI	TCGCGA	1 cut(s)	82
BveI	ACCTGC	5 cut(s)	169, 741, 1129, 2467, 3259
CaiI	CAGNNNCTG	1 cut(s)	2624
CfoI	GCGC	3 cut(s)	192, 459, 1644
Cfr10I	RCCGGY	2 cut(s)	28, 60
CseI	GACGC	2 cut(s)	53, 2326
Csp6I	GTAC	6 cut(s)	108, 1296, 2288, 3008, 3134, 3296
CviQI	GTAC	6 cut(s)	108, 1296, 2288, 3008, 3134, 3296
DinI	GGCGCC	1 cut(s)	1643
DraI	TTTAAA	1 cut(s)	1803
EaeI	YGGCCR	3 cut(s)	1348, 3224, 3409
EagI	CGGCCG	1 cut(s)	3224
Eam1104I	CTCTTC	8 cut(s)	528, 681, 690, 790, 2250, 2488, 2718, 3364
EarI	CTCTTC	8 cut(s)	528, 681, 690, 790, 2250, 2488, 2718, 3364
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	922
EclXI	CGGCCG	1 cut(s)	3224
Eco130I	CCWWGG	6 cut(s)	928, 944, 977, 1265, 1341, 2688
Eco147I	AGGCCT	1 cut(s)	2137
Eco24I	GRGCYC	1 cut(s)	924
Eco31I	GGTCTC	3 cut(s)	424, 772, 2613
Eco47I	GGWCC	6 cut(s)	971, 1286, 2663, 3031, 3077, 3504
Eco52I	CGGCCG	1 cut(s)	3224
Eco53kI	GAGCTC	1 cut(s)	922
Eco57I	CTGAAG	6 cut(s)	1839, 2484, 2553, 3114, 3411, 3453
Eco81I	CCTNAGG	1 cut(s)	1854
Eco88I	CYCGRG	4 cut(s)	1039, 2207, 2273, 3320
Eco91I	GGTNACC	1 cut(s)	1049
EcoICRI	GAGCTC	1 cut(s)	922
EcoO109I	RGGNCCY	1 cut(s)	932
EcoO65I	GGTNACC	1 cut(s)	1049
EcoRI	GAATTC	3 cut(s)	1086, 1664, 2754
EcoRII	CCWGG	6 cut(s)	807, 1053, 1291, 1645, 1681, 2172
EcoT14I	CCWWGG	6 cut(s)	928, 944, 977, 1265, 1341, 2688
EcoT22I	ATGCAT	3 cut(s)	6, 313, 1005
EcoT38I	GRGCYC	1 cut(s)	924
EgeI	GGCGCC	1 cut(s)	1643
EheI	GGCGCC	1 cut(s)	1643
ErhI	CCWWGG	6 cut(s)	928, 944, 977, 1265, 1341, 2688
Esp3I	CGTCTC	2 cut(s)	2354, 3317
FalI	AAGNNNNNCTT	2 cut(s)	1904, 1936
FaqI	GGGAC	2 cut(s)	1005, 1188
FauI	CCCGC	2 cut(s)	41, 269
FblI	GTMKAC	2 cut(s)	1544, 1860
FriOI	GRGCYC	1 cut(s)	924
FspBI	CTAG	8 cut(s)	995, 1773, 1980, 2231, 2259, 2402, 2970, 3153
GlaI	GCGC	3 cut(s)	191, 458, 1643
GsaI	CCCAGC	3 cut(s)	1101, 1952, 3143
GsuI	CTGGAG	2 cut(s)	154, 1781
HaeII	RGCGCY	1 cut(s)	1645
HapII	CCGG	3 cut(s)	29, 61, 3185
HgaI	GACGC	2 cut(s)	53, 2326
HhaI	GCGC	3 cut(s)	192, 459, 1644
Hin1I	GRCGYC	3 cut(s)	64, 1642, 2318
Hin6I	GCGC	3 cut(s)	190, 457, 1642
HinP1I	GCGC	3 cut(s)	190, 457, 1642
HincII	GTYRAC	3 cut(s)	544, 1938, 2872
HindII	GTYRAC	3 cut(s)	544, 1938, 2872
HindIII	AAGCTT	1 cut(s)	2090
HpaII	CCGG	3 cut(s)	29, 61, 3185
Hpy166II	GTNNAC	8 cut(s)	544, 1545, 1583, 1861, 1938, 1975, 2872, 3303
Hpy8I	GTNNAC	8 cut(s)	544, 1545, 1583, 1861, 1938, 1975, 2872, 3303
Hpy99I	CGWCG	2 cut(s)	468, 2320
HpyCH4III	ACNGT	7 cut(s)	320, 1227, 1721, 2343, 2558, 3148, 3300
HpyCH4IV	ACGT	3 cut(s)	718, 2500, 3305
HpySE526I	ACGT	3 cut(s)	718, 2500, 3305
Hsp92I	GRCGYC	3 cut(s)	64, 1642, 2318
HspAI	GCGC	3 cut(s)	190, 457, 1642
KasI	GGCGCC	1 cut(s)	1641
KroI	GCCGGC	2 cut(s)	28, 60
KroNI	GCCGGC	2 cut(s)	30, 62
LguI	GCTCTTC	1 cut(s)	2718
MaeI	CTAG	8 cut(s)	995, 1773, 1980, 2231, 2259, 2402, 2970, 3153
MaeII	ACGT	3 cut(s)	718, 2500, 3305
MaeIII	GTNAC	6 cut(s)	629, 1049, 3021, 3053, 3148, 3276
MbiI	CCGCTC	2 cut(s)	267, 3502
MfeI	CAATTG	2 cut(s)	1421, 1623
MflI	RGATCY	4 cut(s)	965, 1505, 3337, 3428
MhlI	GDGCHC	4 cut(s)	924, 1977, 2597, 3166
MlsI	TGGCCA	2 cut(s)	1350, 3411
MluNI	TGGCCA	2 cut(s)	1350, 3411
Mly113I	GGCGCC	1 cut(s)	1642
MlyI	GAGTC	3 cut(s)	896, 2867, 3485
MmeI	TCCRAC	3 cut(s)	1703, 1762, 2568
Mox20I	TGGCCA	2 cut(s)	1350, 3411
Mph1103I	ATGCAT	3 cut(s)	6, 313, 1005
MreI	CGCCGGCG	1 cut(s)	28
MroNI	GCCGGC	2 cut(s)	28, 60
MroXI	GAANNNNTTC	1 cut(s)	2409
MscI	TGGCCA	2 cut(s)	1350, 3411
MseI	TTAA	5 cut(s)	1310, 1754, 1802, 2681, 3608
MslI	CAYNNNNRTG	3 cut(s)	1056, 1962, 3417
Msp20I	TGGCCA	2 cut(s)	1350, 3411
MspA1I	CMGCKG	3 cut(s)	48, 1952, 3139
MspI	CCGG	3 cut(s)	29, 61, 3185
MspR9I	CCNGG	6 cut(s)	809, 1055, 1293, 1647, 1683, 2174
MunI	CAATTG	2 cut(s)	1421, 1623
Mva1269I	GAATGC	2 cut(s)	2900, 3021
MvaI	CCWGG	6 cut(s)	809, 1055, 1293, 1647, 1683, 2174
MvnI	CGCG	2 cut(s)	82, 192
NaeI	GCCGGC	2 cut(s)	30, 62
NarI	GGCGCC	1 cut(s)	1642
NgoMIV	GCCGGC	2 cut(s)	28, 60
NheI	GCTAGC	1 cut(s)	1772
NlaIV	GGNNCC	8 cut(s)	199, 819, 1497, 1643, 2646, 3033, 3318, 3598
NmeAIII	GCCGAG	2 cut(s)	421, 2119
NmuCI	GTSAC	6 cut(s)	629, 1049, 3021, 3053, 3148, 3276
NruI	TCGCGA	1 cut(s)	82
NsiI	ATGCAT	3 cut(s)	6, 313, 1005
NspI	RCATGY	5 cut(s)	91, 360, 1003, 2711, 2895
NspV	TTCGAA	1 cut(s)	730
OliI	CACNNNNGTG	2 cut(s)	1056, 1962
PaeI	GCATGC	1 cut(s)	2711
PaeR7I	CTCGAG	1 cut(s)	2207
PaqCI	CACCTGC	2 cut(s)	2467, 3259
PceI	AGGCCT	1 cut(s)	2137
PciI	ACATGT	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	2718
PcsI	WCGNNNNNNNCGW	2 cut(s)	790, 1837
PctI	GAATGC	2 cut(s)	2900, 3021
PdiI	GCCGGC	2 cut(s)	30, 62
PdmI	GAANNNNTTC	1 cut(s)	2409
PfeI	GAWTC	8 cut(s)	121, 298, 373, 876, 893, 1574, 1895, 2615
PflMI	CCANNNNNTGG	1 cut(s)	814
Ple19I	CGATCG	1 cut(s)	17
PleI	GAGTC	3 cut(s)	896, 2867, 3484
PluTI	GGCGCC	1 cut(s)	1645
PpsI	GAGTC	3 cut(s)	896, 2867, 3484
PscI	ACATGT	1 cut(s)	356
PshBI	ATTAAT	1 cut(s)	1310
PsiI	TTATAA	1 cut(s)	2946
Psp124BI	GAGCTC	1 cut(s)	924
Psp1406I	AACGTT	1 cut(s)	2500
Psp6I	CCWGG	6 cut(s)	807, 1053, 1291, 1645, 1681, 2172
PspEI	GGTNACC	1 cut(s)	1049
PspFI	CCCAGC	3 cut(s)	1097, 1948, 3139
PspGI	CCWGG	6 cut(s)	807, 1053, 1291, 1645, 1681, 2172
PspN4I	GGNNCC	8 cut(s)	199, 819, 1497, 1643, 2646, 3033, 3318, 3598
PstI	CTGCAG	3 cut(s)	2016, 2865, 3256
PstNI	CAGNNNCTG	1 cut(s)	2624
PsuI	RGATCY	4 cut(s)	965, 1505, 3337, 3428
PvuI	CGATCG	1 cut(s)	17
PvuII	CAGCTG	2 cut(s)	1952, 3139
RruI	TCGCGA	1 cut(s)	82
RsaI	GTAC	6 cut(s)	109, 1297, 2289, 3009, 3135, 3297
RsaNI	GTAC	6 cut(s)	108, 1296, 2288, 3008, 3134, 3296
RseI	CAYNNNNRTG	3 cut(s)	1056, 1962, 3417
SacI	GAGCTC	1 cut(s)	924
SapI	GCTCTTC	1 cut(s)	2718
SaqAI	TTAA	5 cut(s)	1310, 1754, 1802, 2681, 3608
SchI	GAGTC	3 cut(s)	896, 2867, 3485
ScrFI	CCNGG	6 cut(s)	809, 1055, 1293, 1647, 1683, 2174
SduI	GDGCHC	4 cut(s)	924, 1977, 2597, 3166
SfcI	CTRYAG	3 cut(s)	2012, 2861, 3252
SfoI	GGCGCC	1 cut(s)	1643
Sfr274I	CTCGAG	1 cut(s)	2207
SfuI	TTCGAA	1 cut(s)	730
SgrAI	CRCCGGYG	1 cut(s)	28
SinI	GGWCC	6 cut(s)	971, 1286, 2663, 3031, 3077, 3504
SlaI	CTCGAG	1 cut(s)	2207
SmiMI	CAYNNNNRTG	3 cut(s)	1056, 1962, 3417
SmlI	CTYRAG	4 cut(s)	2207, 3069, 3440, 3530
SmoI	CTYRAG	4 cut(s)	2207, 3069, 3440, 3530
SphI	GCATGC	1 cut(s)	2711
SseBI	AGGCCT	1 cut(s)	2137
SspDI	GGCGCC	1 cut(s)	1641
SspI	AATATT	2 cut(s)	2490, 3238
SspMI	CTAG	8 cut(s)	995, 1773, 1980, 2231, 2259, 2402, 2970, 3153
SstI	GAGCTC	1 cut(s)	924
StuI	AGGCCT	1 cut(s)	2137
StyD4I	CCNGG	6 cut(s)	807, 1053, 1291, 1645, 1681, 2172
StyI	CCWWGG	6 cut(s)	928, 944, 977, 1265, 1341, 2688
TaaI	ACNGT	7 cut(s)	320, 1227, 1721, 2343, 2558, 3148, 3300
TaiI	ACGT	3 cut(s)	721, 2503, 3308
TaqI	TCGA	8 cut(s)	730, 793, 874, 924, 2208, 2998, 3166, 3567
TatI	WGTACW	2 cut(s)	3133, 3295
TauI	GCSGC	5 cut(s)	35, 167, 267, 1642, 3490
TfiI	GAWTC	8 cut(s)	121, 298, 373, 876, 893, 1574, 1895, 2615
Tru1I	TTAA	5 cut(s)	1310, 1754, 1802, 2681, 3608
Tru9I	TTAA	5 cut(s)	1310, 1754, 1802, 2681, 3608
TscAI	CASTG	4 cut(s)	1822, 2076, 2457, 3045
TseFI	GTSAC	6 cut(s)	629, 1049, 3021, 3053, 3148, 3276
Tsp45I	GTSAC	6 cut(s)	629, 1049, 3021, 3053, 3148, 3276
TspGWI	ACGGA	3 cut(s)	55, 1829, 2369
TspRI	CASTG	4 cut(s)	1822, 2076, 2457, 3045
Van91I	CCANNNNNTGG	1 cut(s)	814
VneI	GTGCAC	1 cut(s)	1973
VpaK11BI	GGWCC	6 cut(s)	971, 1286, 2663, 3031, 3077, 3504
VspI	ATTAAT	1 cut(s)	1310
XapI	RAATTY	9 cut(s)	1086, 1524, 1664, 1704, 1877, 2408, 2754, 3629, 3649
XceI	RCATGY	5 cut(s)	91, 360, 1003, 2711, 2895
XhoI	CTCGAG	1 cut(s)	2207
XmiI	GTMKAC	2 cut(s)	1544, 1860
XmnI	GAANNNNTTC	1 cut(s)	2409
XspI	CTAG	8 cut(s)	995, 1773, 1980, 2231, 2259, 2402, 2970, 3153
Zsp2I	ATGCAT	3 cut(s)	6, 313, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.