Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Forward (+)

35933128 .. 35940122

Gene Structure 6995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG141500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3681 bp

ATGCCCAGAGAGGATCTATCGGAGATGCATCCGAAGCGATCGGATGGGTCGCCGGCGGCATTACGGAGCAGCGGGCGGATCAGCCGGCGTCCGAAAACTTACTCGCGAAGCATGTTCTATTACAACACGAGTACCAGTAGCATGATTCACAAACGCAGAAGGAAGGCCAAGACCAAGAACCGACCTGCCGCCTCCAGAATTGCTAAGATGATGCGCGATGGCTCCACTCGTTCCCAAAGATCGCCCCACCCCACTTCTCCCACTAAGCTCAATGCAAATTTACCCCGCCGCTCCGAAAGAAGGAGAACTCTGTCGGTAAAGAATCCAGATTATGCATCAGACAGTTCCGATGGTGATGAAGACATGATGAAACCCTCTACATGTAAATCTATCAAGAATCGGGGTGCATATCAAGATGAATTATCACCTTCCAAGCACAAAAAGATGGTGGAGAGACCAACACCTCGGCGTGAAGGATTGCGCCCTCGTCGCTCTAAGACTATTTCAAATGAGGATATACTTTTTGGATATGACGATCTTCCTGTTGATAGTTCGGAAGAGAAGGTTGACCAAGAAGAAACCGAAAATGGGCAGGATATTGAATACAATGATGCAGATGATGGTCAGAATGAGGGCGATGGTGAAGACATGGGTGACGATGATGGAGATGAAGATGGTGATGAAGATGGTGATGATGATGGTGATGATGAAGAGGGTGAAGAGGAACAAGATGGAAGAAGACGTTATGATCTTCGAAATCGTGCAGAAGTCCGCAGGTTCTCTATTGAAGAAGGTAAGCGGAGACCACGATCTCCTCGAAGAGTATTGCACCAGGGAATGGGGCCAAAGGTCAGTAGGGATGTAAGAAAGGGTGGATCACGAGTTCATAAGCGACATCGAATCACAAGGACTGATGATTCTGATGACTCCCTTCTTGTGGATGAGCTCGACCAAGGCCCTGCAATTCCTTGGGGGAAAGGTGGGAGCAGATCTGGACCACCTTGGCTTTTTGGGGGACTAGACATGCATGGAACAACGACATGGGGTTTGAATGTTGCTGCCTCGGGTTGGGGTCACCAGGGTGATGCTTTTGCTACCTTGACTTCTGGAATTCAAACTGCTGGGCCAAGCTCAAAGGGAGGGGCAGACATACAACCTTTGCAGGTTGATGATAGTGTCAGTTTTGAGGATATAGGGGGACTTTCTCAATATATTGATGCTTTGAAGGAAATGGTTTTCTTTCCTTTACTGTATCCAGATTTCTTTGCAAGCTATCATATCACCCCACCAAGGGGAGTTTTGTTATGTGGTCCTCCTGGTACTGGGAAAACGTTAATTGCCAGAGCCTTAGCCTCTGCTGCATCCAAGGCTGGCCAGAAAGTGAGTTTTTACATGAGGAAGGGTGCAGATGTCCTAAGCAAGTGGGTTGGCGAGGCTGAAAGACAATTGAAACTTCTTTTTGAGGAAGCACAAAGAAATCAACCTTCAATCATATTCTTTGATGAAATAGATGGACTGGCTCCTGTAAGATCCAGCAAACAAGAGCAAATTCATAATTCTATTGTGTCTACATTGCTTGCTCTGATGGATGGTCTTGATTCCCGTGGACAAGTGGTTTTGATCGGAGCAACCAACCGAATTGATGCAATTGATGGAGCTTTGCGGCGCCCTGGTAGATTTGATCGTGAATTCAACTTTCCTTTGCCTGGCTGTGAGGCCCGTGCTGAAATTTTAGACATTCACAGTCGGAAATGGAAGCATCCTCCTTCAAATGAGTTAAAACTGGAGCTTGCAGCTAGCTGTGTTGGATATTGTGGTGCTGATTTAAAGGCTCTTTGCACTGAAGCTGCTATTCGTGCTTTCCGTGAAAAATATCCTCAGGTCTACACAAGTGATGATAAATTTGTAATTGATGTTGATTCAGTAAGGGTTGAAAAGTATCACTTTGTTGAAGCCATGTCAACAATCACCCCAGCTGCTCACAGAGGTGCTGTTGTGCACTCTAGGCCATTGTCTTTAGTAGTTGCACCATGCCTGCAGAGGCATCTCCAAAGAGCCATGAACTATATATCCGATATTTTCCCTCCGATTGCAGTGTCATCAGAATTGACCAAGCTTTCCATGCTCTCTTGTGGCTCTGCCATTCCTCTTGTTTATAGGCCTCGGCTTCTTCTATGTGGTGGTGAAGGTTCTGGCCTGGATCATCTTGGGCCTGCTATTTTACATGAACTCGAGAAGTTTCCTGTCCATTCTCTAGGACTTCCATCTCTTCTATCTGATCCTAGTGCAAAGACACCAGAGGAAGCATTGGTACATATATTTGGTGAAGCAAGGAGGACGACGCCATCAATTCTCTACTTGCCACAGTTCAATCTGTGGTGGGAGACGGCACATGAGCAGCTCCGCGCAGTTTTGCTGACATTGCTAGAAGAATTTCCATCTGATTTACCTATATTACTACTTGCAACGTCATCAGTGCCACCTGCTGAAGTTGATGCTATGACCTCTTCAATATTCTCCGAACGTTCTGTCTATCAGGTGGATACACCTTCTACTGAAGACAGATCATTGTTTTTTGACCGTCTGATTGAAGCTGCCTTGTCAGTCTTGTTGGAGGGCACAACTAAAAGGTCTCAGGAATCAGTATCTGTTCCTGAACTTCCAAAGGCTCCAAAAGTGGCAAGTGGTCCAAAGGTGTCAGAGTTAAAAGCCAAGGTAGAAGCTGAGCAGCATGCTCTTCGCCGATTGCGGATGTGCCTCAGAGATGTTTGCAATAGAATTCTATACGATAAGAGGTTTAGTGCTTTTCACTATCCTGTCTTGGATGAGGATGCTCCAAACTATCGCTCAATTATCCAAAATCCTATGGATGTTGCAACTCTGCTGCAGCGTGTTGACTCTGGGCTGTATATTACATGCTCAGCATTCCTGCAAGATGTTGATCTTATAGTTTCTAATGCAAAGGCTTATAATGGAGATGATTACAATGGTGCTAGGATTGTTAGTAGAGGTTTTGAGCTTCGAGATGCGGTACATGGAATGCTGTCACAGATGGACCCTGCACTGATTGCATATTGTGACAAGATTGCTGCTCAAGGTGGTCCAGAACAAATACCTGAAGATTTAGGGGTAGCTACTTTCCCATCAATACCTGTTGTACAGCTGGGAACTGTCACTAGGGCGAGTGCTCGACTTCGTAATGTGCAGCCGGAGGTAAATCTGGATCATAGCTACGAGGCACACAAACGGCCGAAGAAGAATATTGATGCCACACCTGCAGCTTCAACAGCAGAAGACAAGTCACAGCATCAAGGTTCTGTACTGTCCACGTCATCTCAGGAACCCGAGACGAATAACACAGATCTTGGAGTGCCAGAAACCTCTTCTGTTGTTCCCAATCAGCTTGAAACTTCTGAAGTAGTAGAAGTTTCTGGCCATGCTGATGCGAGTGGATCTGAAGACATCAAGATGTTAGATGGTGAGATTACAAACCAAATGGAGTCTGTCAAGCGGCTTTTTGTGGAGCGGACCCAAACTTATGACATTCCACAGCTTGAGAGGCTTTATGCAAGAATTATGAAGGGCATTTTCGACATCAAGGACAAAAGCGATATAGATGGCACCAAGCATTTAATTTTGAAGTATTTGTTGAAATTTGCAGAGGATGAAGCAAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

1226

Amino Acids

135.96

Weight (kDa)

5.71

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IstB_IS21	PF01695	431 - 515	3.7e-07	IstB-like ATP binding protein
AAA	PF00004	433 - 568	4.9e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	596 - 632	1.8e-10	AAA+ lid domain
Bromodomain	PF00439	924 - 994	2e-13	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2970
AarI	CACCTGC	2 cut(s)	2491, 3283
Acc36I	ACCTGC	5 cut(s)	193, 765, 1153, 2491, 3283
AccB1I	GGYRCC	2 cut(s)	1665, 3620
AccB7I	CCANNNNNTGG	1 cut(s)	838
AccBSI	CCGCTC	2 cut(s)	291, 3526
AccI	GTMKAC	2 cut(s)	1568, 1884
AccII	CGCG	3 cut(s)	106, 216, 2406
AclI	AACGTT	2 cut(s)	1331, 2524
AclWI	GGATC	8 cut(s)	21, 86, 883, 1524, 2208, 2273, 3231, 3460
AcoI	YGGCCR	3 cut(s)	1372, 3248, 3433
AcuI	CTGAAG	6 cut(s)	1863, 2508, 2577, 3138, 3435, 3477
AcyI	GRCGYC	3 cut(s)	88, 1666, 2342
AfaI	GTAC	6 cut(s)	133, 1321, 2313, 3033, 3159, 3321
AflIII	ACRYGT	1 cut(s)	380
AjiI	CACGTC	1 cut(s)	3330
AjnI	CCWGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
AleI	CACNNNNGTG	2 cut(s)	1080, 1986
AloI	GAACNNNNNNTCC	4 cut(s)	867, 899, 2054, 2086
Alw21I	GWGCWC	3 cut(s)	948, 2001, 3190
Alw26I	GTCTC	5 cut(s)	448, 796, 2378, 2637, 3341
Alw44I	GTGCAC	1 cut(s)	1997
AlwI	GGATC	8 cut(s)	21, 86, 883, 1524, 2208, 2273, 3231, 3460
AlwNI	CAGNNNCTG	1 cut(s)	2648
Ama87I	CYCGRG	3 cut(s)	1063, 2231, 3344
ApaLI	GTGCAC	1 cut(s)	1997
ArsI	GACNNNNNNTTYG	4 cut(s)	1030, 1062, 2514, 2546
Asp700I	GAANNNNTTC	1 cut(s)	2433
AspLEI	GCGC	4 cut(s)	216, 483, 1668, 2408
AsuII	TTCGAA	1 cut(s)	754
AsuNHI	GCTAGC	1 cut(s)	1796
AvaI	CYCGRG	3 cut(s)	1063, 2231, 3344
AvaII	GGWCC	6 cut(s)	995, 1310, 2687, 3055, 3101, 3528
AxyI	CCTNAGG	1 cut(s)	1878
BaeGI	GKGCMC	2 cut(s)	2001, 2621
BaeI	ACNNNNGTAYC	2 cut(s)	115, 148
BalI	TGGCCA	2 cut(s)	1374, 3435
BanI	GGYRCC	2 cut(s)	1665, 3620
BanII	GRGCYC	1 cut(s)	948
BarI	GAAGNNNNNNTAC	2 cut(s)	2295, 2327
BauI	CACGAG	2 cut(s)	127, 879
BbsI	GAAGAC	6 cut(s)	366, 651, 745, 2565, 3300, 3465
Bbv12I	GWGCWC	3 cut(s)	948, 2001, 3190
BceAI	ACGGC	2 cut(s)	2403, 3263
BcgI	CGANNNNNNTGC	2 cut(s)	2720, 2754
BciT130I	CCWGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
BciVI	GTATCC	2 cut(s)	1263, 2536
BcoDI	GTCTC	5 cut(s)	448, 796, 2378, 2637, 3341
BfaI	CTAG	8 cut(s)	1019, 1797, 2004, 2255, 2283, 2426, 2994, 3177
BfmI	CTRYAG	3 cut(s)	2036, 2885, 3276
BfoI	RGCGCY	1 cut(s)	1669
BfuAI	ACCTGC	5 cut(s)	193, 765, 1153, 2491, 3283
BfuI	GTATCC	2 cut(s)	1263, 2536
BglII	AGATCT	2 cut(s)	989, 3361
BlpI	GCTNAGC	2 cut(s)	2724, 2920
Bme1390I	CCNGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
Bme18I	GGWCC	6 cut(s)	995, 1310, 2687, 3055, 3101, 3528
BmeT110I	CYCGRG	3 cut(s)	1063, 2231, 3344
BmgBI	CACGTC	1 cut(s)	3330
BmiI	GGNNCC	9 cut(s)	223, 843, 1521, 1667, 2670, 3057, 3342, 3530, 3622
BmrFI	CCNGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
BmrI	ACTGGG	1 cut(s)	1332
BmtI	GCTAGC	1 cut(s)	1800
BmuI	ACTGGG	1 cut(s)	1332
BpiI	GAAGAC	6 cut(s)	366, 651, 745, 2565, 3300, 3465
BpmI	CTGGAG	2 cut(s)	178, 1805
Bpu10I	CCTNAGC	2 cut(s)	1348, 1415
Bpu1102I	GCTNAGC	2 cut(s)	2724, 2920
Bpu14I	TTCGAA	1 cut(s)	754
BpuEI	CTTGAG	2 cut(s)	3078, 3575
BsaBI	GATNNNNATC	1 cut(s)	2940
BsaHI	GRCGYC	3 cut(s)	88, 1666, 2342
BsaI	GGTCTC	3 cut(s)	448, 796, 2637
Bse118I	RCCGGY	2 cut(s)	52, 84
Bse1I	ACTGG	4 cut(s)	135, 1327, 1521, 1788
Bse21I	CCTNAGG	1 cut(s)	1878
Bse3DI	GCAATG	2 cut(s)	1571, 2420
Bse8I	GATNNNNATC	1 cut(s)	2940
BseBI	CCWGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
BseJI	GATNNNNATC	1 cut(s)	2940
BseMI	GCAATG	2 cut(s)	1571, 2420
BseMII	CTCAG	6 cut(s)	1892, 2648, 2715, 2773, 2934, 3350
BseNI	ACTGG	4 cut(s)	135, 1327, 1521, 1788
BseRI	GAGGAG	1 cut(s)	804
BseSI	GKGCMC	2 cut(s)	2001, 2621
BseX3I	CGGCCG	1 cut(s)	3248
BseYI	CCCAGC	3 cut(s)	1121, 1972, 3163
BsgI	GTGCAG	4 cut(s)	783, 1425, 3045, 3224
Bsh1236I	CGCG	3 cut(s)	106, 216, 2406
Bsh1285I	CGRYCG	2 cut(s)	41, 3251
BshNI	GGYRCC	2 cut(s)	1665, 3620
BsiEI	CGRYCG	2 cut(s)	41, 3251
BsiHKAI	GWGCWC	3 cut(s)	948, 2001, 3190
BsiHKCI	CYCGRG	3 cut(s)	1063, 2231, 3344
BsiSI	CCGG	3 cut(s)	53, 85, 3209
BslFI	GGGAC	2 cut(s)	1029, 1212
BsmAI	GTCTC	5 cut(s)	448, 796, 2378, 2637, 3341
BsmBI	CGTCTC	2 cut(s)	2378, 3341
BsmFI	GGGAC	2 cut(s)	1029, 1212
BsmI	GAATGC	2 cut(s)	2924, 3045
Bso31I	GGTCTC	3 cut(s)	448, 796, 2637
BsoBI	CYCGRG	3 cut(s)	1063, 2231, 3344
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	4 cut(s)	948, 2001, 2621, 3190
Bsp1407I	TGTACA	1 cut(s)	3157
Bsp1720I	GCTNAGC	2 cut(s)	2724, 2920
Bsp68I	TCGCGA	1 cut(s)	106
BspCNI	CTCAG	6 cut(s)	1891, 2647, 2716, 2772, 2933, 3349
BspFNI	CGCG	3 cut(s)	106, 216, 2406
BspLI	GGNNCC	9 cut(s)	223, 843, 1521, 1667, 2670, 3057, 3342, 3530, 3622
BspMAI	CTGCAG	3 cut(s)	2040, 2889, 3280
BspMI	ACCTGC	5 cut(s)	193, 765, 1153, 2491, 3283
BspOI	GCTAGC	1 cut(s)	1800
BspPI	GGATC	8 cut(s)	21, 86, 883, 1524, 2208, 2273, 3231, 3460
BspQI	GCTCTTC	1 cut(s)	2742
BspT104I	TTCGAA	1 cut(s)	754
BspT107I	GGYRCC	2 cut(s)	1665, 3620
BspTNI	GGTCTC	3 cut(s)	448, 796, 2637
BsrBI	CCGCTC	2 cut(s)	291, 3526
BsrDI	GCAATG	2 cut(s)	1571, 2420
BsrFI	RCCGGY	2 cut(s)	52, 84
BsrGI	TGTACA	1 cut(s)	3157
BsrI	ACTGG	4 cut(s)	135, 1327, 1521, 1788
BssAI	RCCGGY	2 cut(s)	52, 84
BssNI	GRCGYC	3 cut(s)	88, 1666, 2342
BssSI	CACGAG	2 cut(s)	127, 879
BssT1I	CCWWGG	6 cut(s)	952, 968, 1001, 1289, 1365, 2712
Bst2BI	CACGAG	2 cut(s)	127, 879
Bst2UI	CCWGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
Bst4CI	ACNGT	7 cut(s)	344, 1251, 1745, 2367, 2582, 3172, 3324
Bst6I	CTCTTC	8 cut(s)	552, 705, 714, 814, 2274, 2512, 2742, 3388
BstACI	GRCGYC	3 cut(s)	88, 1666, 2342
BstAPI	GCANNNNNTGC	1 cut(s)	3068
BstAUI	TGTACA	1 cut(s)	3157
BstBI	TTCGAA	1 cut(s)	754
BstDSI	CCRYGG	1 cut(s)	1603
BstEII	GGTNACC	1 cut(s)	1073
BstFNI	CGCG	3 cut(s)	106, 216, 2406
BstH2I	RGCGCY	1 cut(s)	1669
BstHHI	GCGC	4 cut(s)	216, 483, 1668, 2408
BstMAI	GTCTC	5 cut(s)	448, 796, 2378, 2637, 3341
BstMCI	CGRYCG	2 cut(s)	41, 3251
BstNI	CCWGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
BstNSI	RCATGY	5 cut(s)	115, 384, 1027, 2735, 2919
BstPI	GGTNACC	1 cut(s)	1073
BstSCI	CCNGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
BstSFI	CTRYAG	3 cut(s)	2036, 2885, 3276
BstSLI	GKGCMC	2 cut(s)	2001, 2621
BstUI	CGCG	3 cut(s)	106, 216, 2406
BstV2I	GAAGAC	6 cut(s)	366, 651, 745, 2565, 3300, 3465
BstX2I	RGATCY	5 cut(s)	13, 989, 1529, 3361, 3452
BstYI	RGATCY	5 cut(s)	13, 989, 1529, 3361, 3452
BstZI	CGGCCG	1 cut(s)	3248
Bsu36I	CCTNAGG	1 cut(s)	1878
BsuI	GTATCC	2 cut(s)	1263, 2536
BtgI	CCRYGG	1 cut(s)	1603
BtgZI	GCGATG	2 cut(s)	231, 651
BtrI	CACGTC	1 cut(s)	3330
BtsI	GCAGTG	1 cut(s)	2100
BtsIMutI	CAGTG	4 cut(s)	1839, 2100, 2481, 3062
BtuMI	TCGCGA	1 cut(s)	106
BveI	ACCTGC	5 cut(s)	193, 765, 1153, 2491, 3283
CaiI	CAGNNNCTG	1 cut(s)	2648
CfoI	GCGC	4 cut(s)	216, 483, 1668, 2408
Cfr10I	RCCGGY	2 cut(s)	52, 84
CseI	GACGC	2 cut(s)	77, 2350
Csp6I	GTAC	6 cut(s)	132, 1320, 2312, 3032, 3158, 3320
CviQI	GTAC	6 cut(s)	132, 1320, 2312, 3032, 3158, 3320
DinI	GGCGCC	1 cut(s)	1667
DraI	TTTAAA	1 cut(s)	1827
EaeI	YGGCCR	3 cut(s)	1372, 3248, 3433
EagI	CGGCCG	1 cut(s)	3248
Eam1104I	CTCTTC	8 cut(s)	552, 705, 714, 814, 2274, 2512, 2742, 3388
EarI	CTCTTC	8 cut(s)	552, 705, 714, 814, 2274, 2512, 2742, 3388
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	946
EclXI	CGGCCG	1 cut(s)	3248
Eco130I	CCWWGG	6 cut(s)	952, 968, 1001, 1289, 1365, 2712
Eco147I	AGGCCT	1 cut(s)	2161
Eco24I	GRGCYC	1 cut(s)	948
Eco31I	GGTCTC	3 cut(s)	448, 796, 2637
Eco47I	GGWCC	6 cut(s)	995, 1310, 2687, 3055, 3101, 3528
Eco52I	CGGCCG	1 cut(s)	3248
Eco53kI	GAGCTC	1 cut(s)	946
Eco57I	CTGAAG	6 cut(s)	1863, 2508, 2577, 3138, 3435, 3477
Eco81I	CCTNAGG	1 cut(s)	1878
Eco88I	CYCGRG	3 cut(s)	1063, 2231, 3344
Eco91I	GGTNACC	1 cut(s)	1073
EcoICRI	GAGCTC	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	956
EcoO65I	GGTNACC	1 cut(s)	1073
EcoRI	GAATTC	3 cut(s)	1110, 1688, 2778
EcoRII	CCWGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
EcoT14I	CCWWGG	6 cut(s)	952, 968, 1001, 1289, 1365, 2712
EcoT22I	ATGCAT	3 cut(s)	30, 337, 1029
EcoT38I	GRGCYC	1 cut(s)	948
EgeI	GGCGCC	1 cut(s)	1667
EheI	GGCGCC	1 cut(s)	1667
ErhI	CCWWGG	6 cut(s)	952, 968, 1001, 1289, 1365, 2712
Esp3I	CGTCTC	2 cut(s)	2378, 3341
FalI	AAGNNNNNCTT	2 cut(s)	1928, 1960
FaqI	GGGAC	2 cut(s)	1029, 1212
FauI	CCCGC	2 cut(s)	65, 293
FblI	GTMKAC	2 cut(s)	1568, 1884
FriOI	GRGCYC	1 cut(s)	948
FspBI	CTAG	8 cut(s)	1019, 1797, 2004, 2255, 2283, 2426, 2994, 3177
GlaI	GCGC	4 cut(s)	215, 482, 1667, 2407
GsaI	CCCAGC	3 cut(s)	1125, 1976, 3167
GsuI	CTGGAG	2 cut(s)	178, 1805
HaeII	RGCGCY	1 cut(s)	1669
HapII	CCGG	3 cut(s)	53, 85, 3209
HgaI	GACGC	2 cut(s)	77, 2350
HhaI	GCGC	4 cut(s)	216, 483, 1668, 2408
Hin1I	GRCGYC	3 cut(s)	88, 1666, 2342
Hin6I	GCGC	4 cut(s)	214, 481, 1666, 2406
HinP1I	GCGC	4 cut(s)	214, 481, 1666, 2406
HincII	GTYRAC	3 cut(s)	568, 1962, 2896
HindII	GTYRAC	3 cut(s)	568, 1962, 2896
HindIII	AAGCTT	1 cut(s)	2114
HpaII	CCGG	3 cut(s)	53, 85, 3209
Hpy166II	GTNNAC	8 cut(s)	568, 1569, 1607, 1885, 1962, 1999, 2896, 3327
Hpy8I	GTNNAC	8 cut(s)	568, 1569, 1607, 1885, 1962, 1999, 2896, 3327
Hpy99I	CGWCG	2 cut(s)	492, 2344
HpyCH4III	ACNGT	7 cut(s)	344, 1251, 1745, 2367, 2582, 3172, 3324
HpyCH4IV	ACGT	5 cut(s)	742, 1331, 2468, 2524, 3329
HpySE526I	ACGT	5 cut(s)	742, 1331, 2468, 2524, 3329
Hsp92I	GRCGYC	3 cut(s)	88, 1666, 2342
HspAI	GCGC	4 cut(s)	214, 481, 1666, 2406
KasI	GGCGCC	1 cut(s)	1665
KroI	GCCGGC	2 cut(s)	52, 84
KroNI	GCCGGC	2 cut(s)	54, 86
LguI	GCTCTTC	1 cut(s)	2742
MaeI	CTAG	8 cut(s)	1019, 1797, 2004, 2255, 2283, 2426, 2994, 3177
MaeII	ACGT	5 cut(s)	742, 1331, 2468, 2524, 3329
MaeIII	GTNAC	6 cut(s)	653, 1073, 3045, 3077, 3172, 3300
MbiI	CCGCTC	2 cut(s)	291, 3526
MfeI	CAATTG	2 cut(s)	1445, 1647
MflI	RGATCY	5 cut(s)	13, 989, 1529, 3361, 3452
MhlI	GDGCHC	4 cut(s)	948, 2001, 2621, 3190
MlsI	TGGCCA	2 cut(s)	1374, 3435
MluNI	TGGCCA	2 cut(s)	1374, 3435
Mly113I	GGCGCC	1 cut(s)	1666
MlyI	GAGTC	3 cut(s)	920, 2891, 3509
MmeI	TCCRAC	3 cut(s)	1727, 1786, 2592
Mox20I	TGGCCA	2 cut(s)	1374, 3435
Mph1103I	ATGCAT	3 cut(s)	30, 337, 1029
MreI	CGCCGGCG	1 cut(s)	52
MroNI	GCCGGC	2 cut(s)	52, 84
MroXI	GAANNNNTTC	1 cut(s)	2433
MscI	TGGCCA	2 cut(s)	1374, 3435
MseI	TTAA	5 cut(s)	1334, 1778, 1826, 2705, 3632
MslI	CAYNNNNRTG	4 cut(s)	1080, 1986, 3441, 3467
Msp20I	TGGCCA	2 cut(s)	1374, 3435
MspA1I	CMGCKG	3 cut(s)	72, 1976, 3163
MspI	CCGG	3 cut(s)	53, 85, 3209
MspR9I	CCNGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
MunI	CAATTG	2 cut(s)	1445, 1647
Mva1269I	GAATGC	2 cut(s)	2924, 3045
MvaI	CCWGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
MvnI	CGCG	3 cut(s)	106, 216, 2406
NaeI	GCCGGC	2 cut(s)	54, 86
NarI	GGCGCC	1 cut(s)	1666
NgoMIV	GCCGGC	2 cut(s)	52, 84
NheI	GCTAGC	1 cut(s)	1796
NlaIV	GGNNCC	9 cut(s)	223, 843, 1521, 1667, 2670, 3057, 3342, 3530, 3622
NmeAIII	GCCGAG	2 cut(s)	445, 2143
NmuCI	GTSAC	6 cut(s)	653, 1073, 3045, 3077, 3172, 3300
NruI	TCGCGA	1 cut(s)	106
NsiI	ATGCAT	3 cut(s)	30, 337, 1029
NspI	RCATGY	5 cut(s)	115, 384, 1027, 2735, 2919
NspV	TTCGAA	1 cut(s)	754
OliI	CACNNNNGTG	2 cut(s)	1080, 1986
PaeI	GCATGC	1 cut(s)	2735
PaeR7I	CTCGAG	1 cut(s)	2231
PaqCI	CACCTGC	2 cut(s)	2491, 3283
PceI	AGGCCT	1 cut(s)	2161
PciI	ACATGT	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	2742
PcsI	WCGNNNNNNNCGW	2 cut(s)	814, 1861
PctI	GAATGC	2 cut(s)	2924, 3045
PdiI	GCCGGC	2 cut(s)	54, 86
PdmI	GAANNNNTTC	1 cut(s)	2433
PfeI	GAWTC	8 cut(s)	145, 322, 397, 900, 917, 1598, 1919, 2639
PflMI	CCANNNNNTGG	1 cut(s)	838
Ple19I	CGATCG	1 cut(s)	41
PleI	GAGTC	3 cut(s)	920, 2891, 3508
PluTI	GGCGCC	1 cut(s)	1669
PpsI	GAGTC	3 cut(s)	920, 2891, 3508
PscI	ACATGT	1 cut(s)	380
PsiI	TTATAA	1 cut(s)	2970
Psp124BI	GAGCTC	1 cut(s)	948
Psp1406I	AACGTT	2 cut(s)	1331, 2524
Psp6I	CCWGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
PspEI	GGTNACC	1 cut(s)	1073
PspFI	CCCAGC	3 cut(s)	1121, 1972, 3163
PspGI	CCWGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
PspN4I	GGNNCC	9 cut(s)	223, 843, 1521, 1667, 2670, 3057, 3342, 3530, 3622
PstI	CTGCAG	3 cut(s)	2040, 2889, 3280
PstNI	CAGNNNCTG	1 cut(s)	2648
PsuI	RGATCY	5 cut(s)	13, 989, 1529, 3361, 3452
PvuI	CGATCG	1 cut(s)	41
PvuII	CAGCTG	2 cut(s)	1976, 3163
RruI	TCGCGA	1 cut(s)	106
RsaI	GTAC	6 cut(s)	133, 1321, 2313, 3033, 3159, 3321
RsaNI	GTAC	6 cut(s)	132, 1320, 2312, 3032, 3158, 3320
RseI	CAYNNNNRTG	4 cut(s)	1080, 1986, 3441, 3467
SacI	GAGCTC	1 cut(s)	948
SapI	GCTCTTC	1 cut(s)	2742
SaqAI	TTAA	5 cut(s)	1334, 1778, 1826, 2705, 3632
SchI	GAGTC	3 cut(s)	920, 2891, 3509
ScrFI	CCNGG	6 cut(s)	833, 1079, 1317, 1671, 1707, 2198
SduI	GDGCHC	4 cut(s)	948, 2001, 2621, 3190
SfcI	CTRYAG	3 cut(s)	2036, 2885, 3276
SfoI	GGCGCC	1 cut(s)	1667
Sfr274I	CTCGAG	1 cut(s)	2231
SfuI	TTCGAA	1 cut(s)	754
SgrAI	CRCCGGYG	1 cut(s)	52
SinI	GGWCC	6 cut(s)	995, 1310, 2687, 3055, 3101, 3528
SlaI	CTCGAG	1 cut(s)	2231
SmiMI	CAYNNNNRTG	4 cut(s)	1080, 1986, 3441, 3467
SmlI	CTYRAG	3 cut(s)	2231, 3093, 3554
SmoI	CTYRAG	3 cut(s)	2231, 3093, 3554
SphI	GCATGC	1 cut(s)	2735
SseBI	AGGCCT	1 cut(s)	2161
SspDI	GGCGCC	1 cut(s)	1665
SspI	AATATT	2 cut(s)	2514, 3262
SspMI	CTAG	8 cut(s)	1019, 1797, 2004, 2255, 2283, 2426, 2994, 3177
SstI	GAGCTC	1 cut(s)	948
StuI	AGGCCT	1 cut(s)	2161
StyD4I	CCNGG	6 cut(s)	831, 1077, 1315, 1669, 1705, 2196
StyI	CCWWGG	6 cut(s)	952, 968, 1001, 1289, 1365, 2712
TaaI	ACNGT	7 cut(s)	344, 1251, 1745, 2367, 2582, 3172, 3324
TaiI	ACGT	5 cut(s)	745, 1334, 2471, 2527, 3332
TaqI	TCGA	8 cut(s)	754, 817, 898, 948, 2232, 3022, 3190, 3591
TatI	WGTACW	2 cut(s)	3157, 3319
TauI	GCSGC	5 cut(s)	59, 191, 291, 1666, 3514
TfiI	GAWTC	8 cut(s)	145, 322, 397, 900, 917, 1598, 1919, 2639
Tru1I	TTAA	5 cut(s)	1334, 1778, 1826, 2705, 3632
Tru9I	TTAA	5 cut(s)	1334, 1778, 1826, 2705, 3632
TscAI	CASTG	4 cut(s)	1846, 2100, 2481, 3069
TseFI	GTSAC	6 cut(s)	653, 1073, 3045, 3077, 3172, 3300
Tsp45I	GTSAC	6 cut(s)	653, 1073, 3045, 3077, 3172, 3300
TspGWI	ACGGA	2 cut(s)	79, 1853
TspRI	CASTG	4 cut(s)	1846, 2100, 2481, 3069
Van91I	CCANNNNNTGG	1 cut(s)	838
VneI	GTGCAC	1 cut(s)	1997
VpaK11BI	GGWCC	6 cut(s)	995, 1310, 2687, 3055, 3101, 3528
XceI	RCATGY	5 cut(s)	115, 384, 1027, 2735, 2919
XhoI	CTCGAG	1 cut(s)	2231
XmiI	GTMKAC	2 cut(s)	1568, 1884
XmnI	GAANNNNTTC	1 cut(s)	2433
XspI	CTAG	8 cut(s)	1019, 1797, 2004, 2255, 2283, 2426, 2994, 3177
Zsp2I	ATGCAT	3 cut(s)	30, 337, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.