Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Reverse (-)

46045530 .. 46048307

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG368600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2778 bp

ATGATGAGTGACAAAGGGAGATGGAAGAAGAGAGGTGGTGCCTCCAGAATTGGTGAGATGATGAGCGATGGCACCGCTACTCCGATTGCCTCCCTCAATACAGATTATTTATCAGACAGTTCCAATGACATGATGAAACCCTCTATCAAGAATCCGGGTGCATATCAAGATGCAGCATTGTCACCTTACAAGCATGAACGACGTGAAGGATTGCGACCTCGTCGCTCAAACACAATTTCAACTCAAGATATAATTTTTGGATATGACAATGACGATCCTGGTAGTTCGGTTGACCAGGATATTGAATACAATGATGCGGATGATGGTCAGAAAGATGATGGAGATATTGGTGAGGGCCAAGATGGAAGAAGACGCTATCATTTTCGAAATCGAAATCGTGCACAAGTCCAAGTCGGCAGGTTCTCTATTGATGAAGGAATGGGGTCAAAGGTCGGTAAGGATGTAAGAGAGTGTGGATCCTCAGTTCACAAGCGTCATCGAATTACAAGGACTGCTGATTCTGCGCTCGACCAAGCTCAAACTGCTGGGCCTGCAGGGCCAAGCTCAGAGGGAGGGACAGACATACAACCTCTGCAGCTGGTTGATCATAGTGTCAATTTTGAGGATATAGGGGGGCTTTCTCAATATATTGATGCTCTGAAGGAAATGGTTTTCTTTCCTTTACTCTATCCAGATCTCTTTGTGAGTTATCATATCACCCCACCAAGGGGTGTCTTGTTATGTGGTCCTCCTGGTACTGGGAAGACATTAATTGCCAGAGCCTTAGCCTCTGCTGCATCCAAGGCTGGCCGCAAAGTTAGTTTTTACATGAGGAAGGGTGCAGATGTGCTAAGCAAGTGGGTTGGCGAGGCTGAAAGACAATTGATACTTCTTTTTGAGGAAGCACAGAGAAATCAACCTTCAATCATATTCTTTGATGAAATAGATGGCCTGGCTCCTGTAAGATCCAGCAGGCAAGAGCAAACTCATAATTCTATTGTGTCTACATTGCTTGCTCTCATGGATGGTCTTGATTCCCGTGGAAAAGTGGTTTTGCTCGGAGCAACCAACCGAGTTGATGCAATTGATGGAGCTTTGCGGCGCCCCGGTAGATTTGATCGTGAATTCAACTTTCCTTTGCCTGGCTGTGAGGCCCGTGCTGAAATTTTAGACATTCACAGTCGGAAATGGAAGCATCCTCCTTCGAATGAGTTAAAATTGGAGCTTGCAGCTAGCTGTGTTGGATACTGTGGTGCTGATTTAAAGGCTCTTTGCACTGAAGCTACCATTCGTGCTTTCCGTGAAAAATATCCTCAGGTCTACACAAGTGATGACAAATTTGTAATTGATGTTGATTCAGTAAGGGTTGAAAAGTATCACTTTGTTGAAGCCATGTCAACAATCACCCCAGCTGCTCACAGAGGTGCTGCTGTGCACTCTAGGCCATTGTCTTTAGTAGTTGCACCATGCCTGCAGAGGCATCTACAAAATGCCATGAACCATATATCCGATATTTTCCCTCCGATTGCAGTGTCATCAGAATTGACCAAGCTTTCCGGGCTGTCTGCTTGTGGCTCTGCCATTCCTCCTGTTTATAGGCCTCGGCTTCTTCTATGTGGTGGTGAAGGTTCTGGCCTGGATCATCTAGGGCCTGCTATTTTACATGAACTCAACCAGTTTCCTGTTCATTGTCTAGGACTTGCATCTCTTCTTTCTGATCCTAGTGCAAAGACACCAGAGGAAGCGCTGGTACATATATTTGGTGAAGCAAGGAGAACGACGCCATCCATTCTCTACTTGCCACAGTTCAATCTGTGGTGGGACAGGGCACATGAGCAGCTCGGCGCGGTTTTTCTGACTTTGCTACAAGAAGTTCCATCTGATTTACCTGTATTACTACTTGCAACGTCATCTGAAGTTGATGCCATCACCTCTTCAATATTCTCCGAACGTTCTGTCTATCAGGTGGCTGGTACGCCATCTAATGAAGACAGATGTTTGTTTTTTGACCGTCTGATCGAAGCTGCCTTGTCAGTCTTGTTGGAGGGCAGGAATAAAAGGTCTCAGGCTGAACTTCCGAAGGCTCCAAAAGTGGCAAGCGGTCCAAAGGTGTCAGAGTTAAACGCCAAGGTAGAATCTGAGCAGCGTGCTCTTCGCCTATTGCAGATGTGCCTCAGAGATGTTTGCAATCGAATTCTATCCGATGAGAGGTTTAGTGCTTTTCACTATCCCATCTTGGATGAGGATGCTCCAAACTATCACTCAATTATCCAAAATCCTATGGATGTTGCGACCCTGCTGCAGCGTGTTGACTCTGGGCTGTATGTTACATGTAAAGCATTCCAGCAAGATGTTGATCTTATAGTTTCCAATGCAAAGGCTTATAATGGAGATGATTACAATGGGGCTAGGATTGTTAGCAGAGCTTATGAGCTTGGATACGTGGTATATGGAATGCTGCAGTCACAGATGGGCCCTGGACTGATTGCATATTGTCACGAGATTGCTGCTCAAGGTGGCCCAGAAGATGTAACTGTTGTCACAAAGGCGAGTGCTCGACTTCGTGAGGTAAATCTGGATCCTAGCTACGAGGCACACAAGAGGCTTTTTGTGCAGCGGACCAAAACTTGTGACATTCCACAGCTCGAGAGGCTATACGCAAGAATTGTGAAGGACATTTTCAACATCAGGGACAGAGACAAAAGCAATATAGTGCCACCTATGCATTTAATTTTCAAGTACTTGTCTAAATTTGCAGAGGATGAAGCAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

925

Amino Acids

102.36

Weight (kDa)

6.1

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IstB_IS21	PF01695	243 - 320	2.9e-06	IstB-like ATP binding protein
AAA	PF00004	245 - 380	2e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	408 - 444	9.7e-10	AAA+ lid domain
Bromodomain	PF00439	728 - 799	1.1e-14	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2385
Acc36I	ACCTGC	1 cut(s)	408
AccB1I	GGYRCC	3 cut(s)	38, 71, 1101
AccI	GTMKAC	2 cut(s)	1004, 1320
AccII	CGCG	1 cut(s)	1847
AciI	CCGC	7 cut(s)	75, 317, 811, 1099, 1847, 2100, 2617
AclI	AACGTT	1 cut(s)	1951
AclWI	GGATC	8 cut(s)	269, 471, 484, 960, 1647, 1712, 2573, 2586
AcoI	YGGCCR	1 cut(s)	808
AcsI	RAATTY	5 cut(s)	1124, 1164, 1337, 2193, 2750
AcuI	CTGAAG	3 cut(s)	680, 1299, 1935
AcyI	GRCGYC	2 cut(s)	1102, 1781
AfaI	GTAC	4 cut(s)	757, 1752, 1975, 2741
AfeI	AGCGCT	1 cut(s)	1746
AfiI	CCNNNNNNNGG	6 cut(s)	726, 727, 728, 758, 1142, 2208
AflIII	ACRYGT	1 cut(s)	2330
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	7 cut(s)	277, 294, 751, 951, 1141, 1635, 2476
AleI	CACNNNNGTG	1 cut(s)	1422
AloI	GAACNNNNNNTCC	4 cut(s)	468, 500, 1490, 1522
Alw21I	GWGCWC	4 cut(s)	403, 1437, 2152, 2557
Alw26I	GTCTC	2 cut(s)	2067, 2691
Alw44I	GTGCAC	2 cut(s)	399, 1433
AlwI	GGATC	8 cut(s)	269, 471, 484, 960, 1647, 1712, 2573, 2586
Ama87I	CYCGRG	1 cut(s)	2645
Aor51HI	AGCGCT	1 cut(s)	1746
ApaI	GGGCCC	1 cut(s)	2477
ApaLI	GTGCAC	2 cut(s)	399, 1433
ApoI	RAATTY	5 cut(s)	1124, 1164, 1337, 2193, 2750
ArsI	GACNNNNNNTTYG	2 cut(s)	1941, 1973
AseI	ATTAAT	1 cut(s)	770
AspLEI	GCGC	4 cut(s)	526, 1104, 1747, 1847
AsuC2I	CCSGG	3 cut(s)	156, 1107, 1558
AsuHPI	GGTGA	8 cut(s)	65, 174, 362, 709, 1396, 1634, 1775, 1921
AsuII	TTCGAA	2 cut(s)	385, 1205
AsuNHI	GCTAGC	1 cut(s)	1232
AvaI	CYCGRG	1 cut(s)	2645
AvaII	GGWCC	3 cut(s)	746, 2102, 2619
AxyI	CCTNAGG	1 cut(s)	1314
BaeGI	GKGCMC	4 cut(s)	403, 1437, 1831, 2477
BaeI	ACNNNNGTAYC	2 cut(s)	1237, 1270
BamHI	GGATCC	2 cut(s)	476, 2578
BanI	GGYRCC	3 cut(s)	38, 71, 1101
BanII	GRGCYC	1 cut(s)	2477
BarI	GAAGNNNNNNTAC	2 cut(s)	1734, 1766
BauI	CACGAG	1 cut(s)	2498
BbsI	GAAGAC	3 cut(s)	376, 770, 1995
Bbv12I	GWGCWC	4 cut(s)	403, 1437, 2152, 2557
BcgI	CGANNNNNNTGC	4 cut(s)	2281, 2315, 2489, 2523
BciT130I	CCWGG	7 cut(s)	279, 296, 753, 953, 1143, 1637, 2478
BciVI	GTATCC	2 cut(s)	1238, 2432
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	3 cut(s)	156, 1107, 1558
BcoDI	GTCTC	2 cut(s)	2067, 2691
BfaI	CTAG	7 cut(s)	1233, 1440, 1646, 1694, 1722, 2409, 2583
BfmI	CTRYAG	5 cut(s)	552, 593, 1472, 2300, 2459
BfoI	RGCGCY	2 cut(s)	1105, 1748
BfuAI	ACCTGC	1 cut(s)	408
BfuI	GTATCC	2 cut(s)	1238, 2432
BglI	GCCNNNNNGGC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	694
BlpI	GCTNAGC	1 cut(s)	851
BmcAI	AGTACT	1 cut(s)	2741
Bme18I	GGWCC	3 cut(s)	746, 2102, 2619
BmeT110I	CYCGRG	1 cut(s)	2645
BmgBI	CACGTC	1 cut(s)	203
BmiI	GGNNCC	8 cut(s)	40, 73, 478, 957, 1103, 2085, 2475, 2580
BmrI	ACTGGG	1 cut(s)	768
BmtI	GCTAGC	1 cut(s)	1236
BmuI	ACTGGG	1 cut(s)	768
BpiI	GAAGAC	3 cut(s)	376, 770, 1995
BpmI	CTGGAG	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	784
Bpu1102I	GCTNAGC	1 cut(s)	851
Bpu14I	TTCGAA	2 cut(s)	385, 1205
BpuEI	CTTGAG	2 cut(s)	228, 2496
BpuMI	CCSGG	3 cut(s)	156, 1107, 1558
BsaAI	YACGTR	1 cut(s)	2443
BsaBI	GATNNNNATC	1 cut(s)	2355
BsaHI	GRCGYC	2 cut(s)	1102, 1781
BsaI	GGTCTC	1 cut(s)	2067
BsaJI	CCNNGG	7 cut(s)	725, 801, 1039, 1105, 1601, 2127, 2476
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	6 cut(s)	726, 727, 728, 758, 1142, 2208
Bse1I	ACTGG	2 cut(s)	763, 1675
Bse21I	CCTNAGG	1 cut(s)	1314
Bse3DI	GCAATG	1 cut(s)	1007
Bse8I	GATNNNNATC	1 cut(s)	2355
BseBI	CCWGG	7 cut(s)	279, 296, 753, 953, 1143, 1637, 2478
BseDI	CCNNGG	7 cut(s)	725, 801, 1039, 1105, 1601, 2127, 2476
BseJI	GATNNNNATC	1 cut(s)	2355
BseLI	CCNNNNNNNGG	6 cut(s)	726, 727, 728, 758, 1142, 2208
BseMI	GCAATG	1 cut(s)	1007
BseMII	CTCAG	6 cut(s)	495, 579, 1328, 2078, 2130, 2188
BseNI	ACTGG	2 cut(s)	763, 1675
BseSI	GKGCMC	4 cut(s)	403, 1437, 1831, 2477
BseYI	CCCAGC	2 cut(s)	545, 1408
BsgI	GTGCAG	2 cut(s)	861, 2633
Bsh1236I	CGCG	1 cut(s)	1847
BshNI	GGYRCC	3 cut(s)	38, 71, 1101
BsiHKAI	GWGCWC	4 cut(s)	403, 1437, 2152, 2557
BsiHKCI	CYCGRG	1 cut(s)	2645
BsiSI	CCGG	3 cut(s)	155, 1107, 1557
BslFI	GGGAC	3 cut(s)	589, 1835, 2705
BslI	CCNNNNNNNGG	6 cut(s)	726, 727, 728, 758, 1142, 2208
BsmAI	GTCTC	2 cut(s)	2067, 2691
BsmFI	GGGAC	3 cut(s)	589, 1835, 2705
BsmI	GAATGC	2 cut(s)	2339, 2460
Bso31I	GGTCTC	1 cut(s)	2067
BsoBI	CYCGRG	1 cut(s)	2645
Bsp119I	TTCGAA	2 cut(s)	385, 1205
Bsp120I	GGGCCC	1 cut(s)	2473
Bsp1286I	GDGCHC	6 cut(s)	403, 1437, 1831, 2152, 2477, 2557
Bsp1720I	GCTNAGC	1 cut(s)	851
BspACI	CCGC	7 cut(s)	75, 317, 811, 1099, 1847, 2100, 2617
BspCNI	CTCAG	6 cut(s)	494, 578, 1327, 2077, 2131, 2187
BspFNI	CGCG	1 cut(s)	1847
BspLI	GGNNCC	8 cut(s)	40, 73, 478, 957, 1103, 2085, 2475, 2580
BspMAI	CTGCAG	5 cut(s)	556, 597, 1476, 2304, 2463
BspMI	ACCTGC	1 cut(s)	408
BspOI	GCTAGC	1 cut(s)	1236
BspPI	GGATC	8 cut(s)	269, 471, 484, 960, 1647, 1712, 2573, 2586
BspQI	GCTCTTC	1 cut(s)	2157
BspT104I	TTCGAA	2 cut(s)	385, 1205
BspT107I	GGYRCC	3 cut(s)	38, 71, 1101
BspTNI	GGTCTC	1 cut(s)	2067
BsrDI	GCAATG	1 cut(s)	1007
BsrI	ACTGG	2 cut(s)	763, 1675
BssECI	CCNNGG	7 cut(s)	725, 801, 1039, 1105, 1601, 2127, 2476
BssNI	GRCGYC	2 cut(s)	1102, 1781
BssSI	CACGAG	1 cut(s)	2498
BssT1I	CCWWGG	3 cut(s)	725, 801, 2127
Bst2BI	CACGAG	1 cut(s)	2498
Bst2UI	CCWGG	7 cut(s)	279, 296, 753, 953, 1143, 1637, 2478
Bst4CI	ACNGT	6 cut(s)	119, 1181, 1250, 1806, 2012, 2536
Bst6I	CTCTTC	4 cut(s)	23, 1713, 1939, 2157
BstACI	GRCGYC	2 cut(s)	1102, 1781
BstBAI	YACGTR	1 cut(s)	2443
BstBI	TTCGAA	2 cut(s)	385, 1205
BstDEI	CTNAG	8 cut(s)	481, 565, 784, 851, 1314, 2064, 2139, 2174
BstDSI	CCRYGG	1 cut(s)	1039
BstFNI	CGCG	1 cut(s)	1847
BstH2I	RGCGCY	2 cut(s)	1105, 1748
BstHHI	GCGC	4 cut(s)	526, 1104, 1747, 1847
BstMAI	GTCTC	2 cut(s)	2067, 2691
BstNI	CCWGG	7 cut(s)	279, 296, 753, 953, 1143, 1637, 2478
BstNSI	RCATGY	1 cut(s)	2334
BstSFI	CTRYAG	5 cut(s)	552, 593, 1472, 2300, 2459
BstSLI	GKGCMC	4 cut(s)	403, 1437, 1831, 2477
BstUI	CGCG	1 cut(s)	1847
BstV2I	GAAGAC	3 cut(s)	376, 770, 1995
BstX2I	RGATCY	4 cut(s)	476, 694, 965, 2578
BstYI	RGATCY	4 cut(s)	476, 694, 965, 2578
Bsu36I	CCTNAGG	1 cut(s)	1314
BsuI	GTATCC	2 cut(s)	1238, 2432
BtgI	CCRYGG	1 cut(s)	1039
BtgZI	GCGATG	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	1536
BtsIMutI	CAGTG	2 cut(s)	1275, 1536
BveI	ACCTGC	1 cut(s)	408
CfoI	GCGC	4 cut(s)	526, 1104, 1747, 1847
CseI	GACGC	3 cut(s)	381, 482, 1789
Csp6I	GTAC	4 cut(s)	756, 1751, 1974, 2740
CviQI	GTAC	4 cut(s)	756, 1751, 1974, 2740
DdeI	CTNAG	8 cut(s)	481, 565, 784, 851, 1314, 2064, 2139, 2174
DinI	GGCGCC	1 cut(s)	1103
DraI	TTTAAA	1 cut(s)	1263
EaeI	YGGCCR	1 cut(s)	808
Eam1104I	CTCTTC	4 cut(s)	23, 1713, 1939, 2157
EarI	CTCTTC	4 cut(s)	23, 1713, 1939, 2157
Eco130I	CCWWGG	3 cut(s)	725, 801, 2127
Eco147I	AGGCCT	1 cut(s)	1600
Eco24I	GRGCYC	1 cut(s)	2477
Eco31I	GGTCTC	1 cut(s)	2067
Eco47I	GGWCC	3 cut(s)	746, 2102, 2619
Eco47III	AGCGCT	1 cut(s)	1746
Eco57I	CTGAAG	3 cut(s)	680, 1299, 1935
Eco81I	CCTNAGG	1 cut(s)	1314
Eco88I	CYCGRG	1 cut(s)	2645
EcoO109I	RGGNCCY	2 cut(s)	1649, 2474
EcoRI	GAATTC	2 cut(s)	1124, 2193
EcoRII	CCWGG	7 cut(s)	277, 294, 751, 951, 1141, 1635, 2476
EcoT14I	CCWWGG	3 cut(s)	725, 801, 2127
EcoT22I	ATGCAT	1 cut(s)	2727
EcoT38I	GRGCYC	1 cut(s)	2477
EgeI	GGCGCC	1 cut(s)	1103
EheI	GGCGCC	1 cut(s)	1103
ErhI	CCWWGG	3 cut(s)	725, 801, 2127
FalI	AAGNNNNNCTT	2 cut(s)	1364, 1396
FaqI	GGGAC	3 cut(s)	589, 1835, 2705
FbaI	TGATCA	1 cut(s)	604
FblI	GTMKAC	2 cut(s)	1004, 1320
FriOI	GRGCYC	1 cut(s)	2477
FspBI	CTAG	7 cut(s)	1233, 1440, 1646, 1694, 1722, 2409, 2583
GlaI	GCGC	4 cut(s)	525, 1103, 1746, 1846
GsaI	CCCAGC	2 cut(s)	549, 1412
GsuI	CTGGAG	1 cut(s)	28
HaeII	RGCGCY	2 cut(s)	1105, 1748
HapII	CCGG	3 cut(s)	155, 1107, 1557
HgaI	GACGC	3 cut(s)	381, 482, 1789
HhaI	GCGC	4 cut(s)	526, 1104, 1747, 1847
Hin1I	GRCGYC	2 cut(s)	1102, 1781
Hin6I	GCGC	4 cut(s)	524, 1102, 1745, 1845
HinP1I	GCGC	4 cut(s)	524, 1102, 1745, 1845
HincII	GTYRAC	3 cut(s)	292, 1398, 2311
HindII	GTYRAC	3 cut(s)	292, 1398, 2311
HindIII	AAGCTT	1 cut(s)	1550
HinfI	GANTC	6 cut(s)	151, 518, 1034, 1355, 2135, 2312
HpaII	CCGG	3 cut(s)	155, 1107, 1557
HphI	GGTGA	8 cut(s)	65, 174, 362, 709, 1396, 1634, 1775, 1921
Hpy166II	GTNNAC	8 cut(s)	292, 401, 487, 1005, 1321, 1398, 1435, 2311
Hpy8I	GTNNAC	8 cut(s)	292, 401, 487, 1005, 1321, 1398, 1435, 2311
Hpy99I	CGWCG	3 cut(s)	204, 225, 1783
HpyAV	CCTTC	9 cut(s)	200, 428, 655, 829, 930, 1212, 1619, 2074, 2665
HpyCH4III	ACNGT	6 cut(s)	119, 1181, 1250, 1806, 2012, 2536
HpyCH4IV	ACGT	4 cut(s)	202, 1907, 1951, 2442
HpyF3I	CTNAG	8 cut(s)	481, 565, 784, 851, 1314, 2064, 2139, 2174
HpySE526I	ACGT	4 cut(s)	202, 1907, 1951, 2442
Hsp92I	GRCGYC	2 cut(s)	1102, 1781
HspAI	GCGC	4 cut(s)	524, 1102, 1745, 1845
KasI	GGCGCC	1 cut(s)	1101
Ksp22I	TGATCA	1 cut(s)	604
LguI	GCTCTTC	1 cut(s)	2157
LmnI	GCTCC	6 cut(s)	961, 1061, 1091, 1222, 2089, 2254
MaeI	CTAG	7 cut(s)	1233, 1440, 1646, 1694, 1722, 2409, 2583
MaeII	ACGT	4 cut(s)	202, 1907, 1951, 2442
MaeIII	GTNAC	8 cut(s)	8, 180, 2326, 2463, 2495, 2530, 2539, 2630
MfeI	CAATTG	2 cut(s)	881, 1083
MflI	RGATCY	4 cut(s)	476, 694, 965, 2578
MhlI	GDGCHC	6 cut(s)	403, 1437, 1831, 2152, 2477, 2557
Mly113I	GGCGCC	1 cut(s)	1102
MlyI	GAGTC	1 cut(s)	2306
MmeI	TCCRAC	3 cut(s)	1163, 1222, 2022
Mph1103I	ATGCAT	1 cut(s)	2727
MseI	TTAA	5 cut(s)	770, 1214, 1262, 2120, 2729
MslI	CAYNNNNRTG	1 cut(s)	1422
MspA1I	CMGCKG	3 cut(s)	598, 1412, 2617
MspI	CCGG	3 cut(s)	155, 1107, 1557
MunI	CAATTG	2 cut(s)	881, 1083
Mva1269I	GAATGC	2 cut(s)	2339, 2460
MvaI	CCWGG	7 cut(s)	279, 296, 753, 953, 1143, 1637, 2478
MvnI	CGCG	1 cut(s)	1847
NarI	GGCGCC	1 cut(s)	1102
NciI	CCSGG	3 cut(s)	156, 1107, 1558
NheI	GCTAGC	1 cut(s)	1232
NlaIV	GGNNCC	8 cut(s)	40, 73, 478, 957, 1103, 2085, 2475, 2580
NmeAIII	GCCGAG	2 cut(s)	1582, 1821
NmuCI	GTSAC	6 cut(s)	8, 180, 2463, 2495, 2539, 2630
NsiI	ATGCAT	1 cut(s)	2727
NspI	RCATGY	1 cut(s)	2334
NspV	TTCGAA	2 cut(s)	385, 1205
OliI	CACNNNNGTG	1 cut(s)	1422
PaeR7I	CTCGAG	1 cut(s)	2645
PceI	AGGCCT	1 cut(s)	1600
PciI	ACATGT	1 cut(s)	2330
PciSI	GCTCTTC	1 cut(s)	2157
PcsI	WCGNNNNNNNCGW	1 cut(s)	1297
PctI	GAATGC	2 cut(s)	2339, 2460
PfeI	GAWTC	5 cut(s)	151, 518, 1034, 1355, 2135
PflFI	GACNNNGTC	1 cut(s)	219
PleI	GAGTC	1 cut(s)	2306
PluTI	GGCGCC	1 cut(s)	1105
PpsI	GAGTC	1 cut(s)	2306
Ppu21I	YACGTR	1 cut(s)	2443
PscI	ACATGT	1 cut(s)	2330
PshBI	ATTAAT	1 cut(s)	770
PsiI	TTATAA	1 cut(s)	2385
Psp1406I	AACGTT	1 cut(s)	1951
Psp6I	CCWGG	7 cut(s)	277, 294, 751, 951, 1141, 1635, 2476
PspFI	CCCAGC	2 cut(s)	545, 1408
PspGI	CCWGG	7 cut(s)	277, 294, 751, 951, 1141, 1635, 2476
PspN4I	GGNNCC	8 cut(s)	40, 73, 478, 957, 1103, 2085, 2475, 2580
PspOMI	GGGCCC	1 cut(s)	2473
PstI	CTGCAG	5 cut(s)	556, 597, 1476, 2304, 2463
PsuI	RGATCY	4 cut(s)	476, 694, 965, 2578
PsyI	GACNNNGTC	1 cut(s)	219
PvuII	CAGCTG	2 cut(s)	598, 1412
RsaI	GTAC	4 cut(s)	757, 1752, 1975, 2741
RsaNI	GTAC	4 cut(s)	756, 1751, 1974, 2740
RseI	CAYNNNNRTG	1 cut(s)	1422
SapI	GCTCTTC	1 cut(s)	2157
SaqAI	TTAA	5 cut(s)	770, 1214, 1262, 2120, 2729
SbfI	CCTGCAGG	1 cut(s)	556
ScaI	AGTACT	1 cut(s)	2741
SchI	GAGTC	1 cut(s)	2306
SdaI	CCTGCAGG	1 cut(s)	556
SduI	GDGCHC	6 cut(s)	403, 1437, 1831, 2152, 2477, 2557
SfcI	CTRYAG	5 cut(s)	552, 593, 1472, 2300, 2459
SfiI	GGCCNNNNNGGCC	1 cut(s)	556
SfoI	GGCGCC	1 cut(s)	1103
Sfr274I	CTCGAG	1 cut(s)	2645
SfuI	TTCGAA	2 cut(s)	385, 1205
SinI	GGWCC	3 cut(s)	746, 2102, 2619
SlaI	CTCGAG	1 cut(s)	2645
SmiMI	CAYNNNNRTG	1 cut(s)	1422
SmlI	CTYRAG	3 cut(s)	243, 2511, 2645
SmoI	CTYRAG	3 cut(s)	243, 2511, 2645
Sse8387I	CCTGCAGG	1 cut(s)	556
SseBI	AGGCCT	1 cut(s)	1600
SsiI	CCGC	7 cut(s)	75, 317, 811, 1099, 1847, 2100, 2617
SspDI	GGCGCC	1 cut(s)	1101
SspI	AATATT	1 cut(s)	1941
SspMI	CTAG	7 cut(s)	1233, 1440, 1646, 1694, 1722, 2409, 2583
StuI	AGGCCT	1 cut(s)	1600
StyI	CCWWGG	3 cut(s)	725, 801, 2127
TaaI	ACNGT	6 cut(s)	119, 1181, 1250, 1806, 2012, 2536
TaiI	ACGT	4 cut(s)	205, 1910, 1954, 2445
TaqI	TCGA	9 cut(s)	385, 391, 499, 528, 1205, 2019, 2191, 2557, 2646
TatI	WGTACW	1 cut(s)	2739
TauI	GCSGC	2 cut(s)	813, 1102
TfiI	GAWTC	5 cut(s)	151, 518, 1034, 1355, 2135
Tru1I	TTAA	5 cut(s)	770, 1214, 1262, 2120, 2729
Tru9I	TTAA	5 cut(s)	770, 1214, 1262, 2120, 2729
TscAI	CASTG	2 cut(s)	1282, 1536
TseFI	GTSAC	6 cut(s)	8, 180, 2463, 2495, 2539, 2630
Tsp45I	GTSAC	6 cut(s)	8, 180, 2463, 2495, 2539, 2630
TspDTI	ATGAA	9 cut(s)	149, 210, 447, 954, 1511, 1676, 1680, 2001, 2778
TspGWI	ACGGA	1 cut(s)	1289
TspRI	CASTG	2 cut(s)	1282, 1536
Tth111I	GACNNNGTC	1 cut(s)	219
VneI	GTGCAC	2 cut(s)	399, 1433
VpaK11BI	GGWCC	3 cut(s)	746, 2102, 2619
VspI	ATTAAT	1 cut(s)	770
XapI	RAATTY	5 cut(s)	1124, 1164, 1337, 2193, 2750
XceI	RCATGY	1 cut(s)	2334
XhoI	CTCGAG	1 cut(s)	2645
XmiI	GTMKAC	2 cut(s)	1004, 1320
XspI	CTAG	7 cut(s)	1233, 1440, 1646, 1694, 1722, 2409, 2583
ZrmI	AGTACT	1 cut(s)	2741
Zsp2I	ATGCAT	1 cut(s)	2727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.