Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Reverse (-)

45884280 .. 45887082

Gene Structure 2803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG364900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2766 bp

ATGATGAGTGACAAAGGGAGAAGGAAGAAGAGAGGCGGTGCCTCCAGAATTGGTGAGATGATGCGCGATGGCACCGCTACTCCGATTGCCTCCCTCAATACAGATTATGTATCAGACAGTTCCAATGACATGATGAAACCCTCTATCAAGAATCCGGGTGCATATCAAGATGCAGCATTATCACCTTACAAGCATGATCGACGTGAAGGATTGCGACCTCGTCGCTCAAACACAATTTCAACTCCAGATATAATTTTTGGGTATGACAATGATGATCCTGGTAGTTCGGTTGACCAGGATATTGAATACAATGATTCGGATGATGGTCAGAAAGATGATGGAGATATTGGTGAGGGCCAAGATGGAAGAAGACGGTATCATTTTCGAAATCGAAATCGTTCACAAGTCCAAGTCGACAGGTTCTCTATTGATCGAGGAATGGGGCCAAAGGTCGGTAAGGATGTAAGAGAGTGTGGATCCTCAGTTCACAAGCGTCATCGAATTACAAGGACTGATGATTCTGCGCTCGACCAAGCTCAAACTGCTGGGCCTGCAGGGCCAAGCTCAGAGGGAGGGACAGACATACAATCTCTGCAGCTGGTTGATCATAGTGTCAGTTTTGAGGATATAGGGGGGCTTTCTCAATATATTGATGCTCTGAAGGAAATGGTTTTCTTTCCTTTACTCTATCCAGATCTCTTTGTGAATTATCATATCACCCCACCAAGGGGTGTCTTGTTATGTGGTCCTCCTGGTACTGGGAAGACATTAATTGCCAGAGCCTTAGCCTCTGCTGCATCCAAGGGTGGCCACAAAGTTAGTTTTTACATGAGGAAGGGTGCAGATGTGCTAAGCAAGTGGGTTGGCGAGGCTGAAAGACAATTGAAACTTCTTTTTGAGGAAGCACAGAGAAATCAACCTTCAATCATATTCTTTGATGAAATAGATGGCCTGGCTCCTGTAAGATCCAGCAGGCAAGAGCAAACTCATAATTCTATTGTGTCTACATTGCTTGCTCTCATGGATGGTCTTGATTCCCGTGGAAAAGTGGTTTTGCTCGGAGCAACCAACCGAGTTGATGCAATTGATGGAGCTTTGCGGCGCCCCGGTAGATTTGATCGTGAATTCAACTTTCCTTTGCCTGGCTGTGAGGCCCGTGCTGAAATTTTAGACATTCACAGTCGGAAATGGAAGCATCCTCCTTCGAATGAGTTAAAATTGGAGCTTGCAGCTAACTGTGTTGGATACTGTGGTGCTGATTTAAAGGCTCTTTGCACTGAAGCTGCCATTCGTGCTTTCCGTGACAAATATCCTCAGGTCTACACAAGTGATGATAAATTTGTAATTGATGTTGATTCAGTAAGGGTTGAAAAGTATCACTTTGTTGAAGCCATGTCAACAATCACCCCAGCTGCTCACAGAGGTGCTGCTGTGCACTCTAGGCCATTGTCTTTAGTAGTTGCACCATGCCTGCAGAGGCATCTACAAAAAGCCATGAACTATATATCCGATATTTTTCCTCTGATTGCAGTGTCATCAGAATTGACCAAGCTTTCCGGGCTGTCTGCCATTCCTCCTGTTTATAGGCCTCGGCTTCTTCTATGTGGTGGTGAAGGTTCTGGCCTGGATCATCTAGGGCCTGCTATTTTACATGAACTCAACCAGTTTCCTGTTCATTGTCTAGGACTTGCATCTCTTCTATCTGATCCTAGTGCAAAGACACCAGAGGAAGCGCTGGTACATATATTTGGTGAAGCAAGGAGAACGACGCCATCCATTCTCTACTTGCCACAGTTCAATCTGTGGTGGGACAGGGCACATGAGCAGCTCGGCGCGGTTTTTCTGACTTTGCTACAAGAAGTTCCATCTGATTTACCTATATTACTACTTGCAACGTCATCTGAAGTTGATGCCATCACCTCTTCAATATTCTCCGAACGTTCTGTCTATCAGGTGACCGGTACGCCATCTAATGAAGACAGATGTTTGTTTTTTGACCGTCTGATCGAAGCTGCCTTGTCAGTCTTGTTGGAGGGCAGGAATAAAAGGTCTCAGGCTGAACTTCCGAAGGCTCCAAAAGTGGCAAGCGGTCCAAAGGTGTCAGAGTTAAACGCCAAGATAGAATCTGAGCAGCGTGCTCTTTGCCTATTGCAGATGTGCCTCAGAGATGTTTGCAATCGAATTCTATCCGATGAGAGGTTCAGTGCTTTTCACTATCCCATCTTGGATGAGGATGCTCCAAACTATCACTCAATTATCCAAAATCCTATGGATGTTGCGACCCTGCTGCAGCGTGTTGACTCTGGGCTGTATGTTACATGTAAAGCATTCCTGCAAGATGTTGATCTTCTAGTTTCCAATGCAAAGGCTTATAATGGAGATGATTACAACGAGGCTAGGATTGTTAGTAGAGCTTATGAGCTTGGATACGTGGTACATGGAATGCTGCAGTCACAGATGGGCCCTGGACTGATTGCATATTGTCACGAGATTGCTGCTCAAGGTGGCCCAGAAGATGCAACTGTTTTCACAAAGGCGAGTGCTCGACTTCGTAAGGTAAATCTGGATCCTAGCTACGAGGCACAAAAGAGGCTTTTTGTGCAGCGGACCGAAACTTGTGACATTCCACAGCTGGAGAGGCTATACGCAAGAATTGTGAAGGACATTTTCAACATCAGGGACAGAGACAAAAGCAATATAGTGCCACCTATGCATTTAATTTTCCGGTACTTGTCTAAATTTGCTGAGGATGAAGCAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

921

Amino Acids

102.28

Weight (kDa)

6.15

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IstB_IS21	PF01695	243 - 321	1.5e-06	IstB-like ATP binding protein
AAA	PF00004	245 - 380	8.1e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	408 - 444	2e-10	AAA+ lid domain
Bromodomain	PF00439	724 - 795	3.1e-14	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2373
AccB1I	GGYRCC	3 cut(s)	38, 71, 1101
AccI	GTMKAC	3 cut(s)	414, 1004, 1320
AccII	CGCG	2 cut(s)	66, 1835
AciI	CCGC	6 cut(s)	36, 75, 1099, 1835, 2088, 2605
AclI	AACGTT	1 cut(s)	1939
AclWI	GGATC	8 cut(s)	269, 471, 484, 960, 1635, 1700, 2561, 2574
AcoI	YGGCCR	1 cut(s)	808
AcsI	RAATTY	5 cut(s)	1124, 1164, 1337, 2181, 2738
AcuI	CTGAAG	3 cut(s)	680, 1299, 1923
AcyI	GRCGYC	2 cut(s)	1102, 1769
AfaI	GTAC	5 cut(s)	757, 1740, 1963, 2436, 2729
AfeI	AGCGCT	1 cut(s)	1734
AfiI	CCNNNNNNNGG	7 cut(s)	452, 726, 727, 728, 758, 1142, 2196
AflIII	ACRYGT	1 cut(s)	2318
AgeI	ACCGGT	1 cut(s)	1958
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	7 cut(s)	277, 294, 751, 951, 1141, 1623, 2464
AleI	CACNNNNGTG	1 cut(s)	1422
AloI	GAACNNNNNNTCC	4 cut(s)	468, 500, 1490, 1522
Alw21I	GWGCWC	3 cut(s)	1437, 2140, 2545
Alw26I	GTCTC	2 cut(s)	2055, 2679
Alw44I	GTGCAC	1 cut(s)	1433
AlwI	GGATC	8 cut(s)	269, 471, 484, 960, 1635, 1700, 2561, 2574
Aor51HI	AGCGCT	1 cut(s)	1734
ApaI	GGGCCC	1 cut(s)	2465
ApaLI	GTGCAC	1 cut(s)	1433
ApoI	RAATTY	5 cut(s)	1124, 1164, 1337, 2181, 2738
ArsI	GACNNNNNNTTYG	2 cut(s)	1929, 1961
AseI	ATTAAT	1 cut(s)	770
AsiGI	ACCGGT	1 cut(s)	1958
Asp700I	GAANNNNTTC	1 cut(s)	397
AspLEI	GCGC	5 cut(s)	66, 526, 1104, 1735, 1835
AsuC2I	CCSGG	3 cut(s)	156, 1107, 1558
AsuHPI	GGTGA	9 cut(s)	65, 174, 362, 709, 1396, 1622, 1763, 1909, 1966
AsuII	TTCGAA	2 cut(s)	385, 1205
AvaII	GGWCC	3 cut(s)	746, 2090, 2607
AxyI	CCTNAGG	1 cut(s)	1314
BaeGI	GKGCMC	3 cut(s)	1437, 1819, 2465
BaeI	ACNNNNGTAYC	2 cut(s)	1237, 1270
BalI	TGGCCA	1 cut(s)	810
BamHI	GGATCC	2 cut(s)	476, 2566
BanI	GGYRCC	3 cut(s)	38, 71, 1101
BanII	GRGCYC	1 cut(s)	2465
BarI	GAAGNNNNNNTAC	2 cut(s)	1722, 1754
BauI	CACGAG	1 cut(s)	2486
BbsI	GAAGAC	3 cut(s)	376, 770, 1983
Bbv12I	GWGCWC	3 cut(s)	1437, 2140, 2545
BbvCI	CCTCAGC	1 cut(s)	2745
BcgI	CGANNNNNNTGC	4 cut(s)	2269, 2303, 2477, 2511
BciT130I	CCWGG	7 cut(s)	279, 296, 753, 953, 1143, 1625, 2466
BciVI	GTATCC	2 cut(s)	1238, 2420
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	3 cut(s)	156, 1107, 1558
BcoDI	GTCTC	2 cut(s)	2055, 2679
BfaI	CTAG	7 cut(s)	1440, 1634, 1682, 1710, 2351, 2397, 2571
BfmI	CTRYAG	5 cut(s)	552, 593, 1472, 2288, 2447
BfoI	RGCGCY	2 cut(s)	1105, 1736
BfuI	GTATCC	2 cut(s)	1238, 2420
BglI	GCCNNNNNGGC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	694
BlpI	GCTNAGC	1 cut(s)	851
Bme18I	GGWCC	3 cut(s)	746, 2090, 2607
BmgBI	CACGTC	1 cut(s)	203
BmiI	GGNNCC	9 cut(s)	40, 73, 444, 478, 957, 1103, 2073, 2463, 2568
BmrI	ACTGGG	1 cut(s)	768
BmuI	ACTGGG	1 cut(s)	768
BpiI	GAAGAC	3 cut(s)	376, 770, 1983
BpmI	CTGGAG	3 cut(s)	28, 228, 2654
Bpu10I	CCTNAGC	2 cut(s)	784, 2745
Bpu1102I	GCTNAGC	1 cut(s)	851
Bpu14I	TTCGAA	2 cut(s)	385, 1205
BpuEI	CTTGAG	1 cut(s)	2484
BpuMI	CCSGG	3 cut(s)	156, 1107, 1558
BsaAI	YACGTR	1 cut(s)	2431
BsaBI	GATNNNNATC	1 cut(s)	2343
BsaHI	GRCGYC	2 cut(s)	1102, 1769
BsaI	GGTCTC	1 cut(s)	2055
BsaJI	CCNNGG	6 cut(s)	725, 801, 1039, 1105, 1589, 2464
BsaWI	WCCGGW	2 cut(s)	1958, 2724
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	7 cut(s)	452, 726, 727, 728, 758, 1142, 2196
Bse118I	RCCGGY	1 cut(s)	1958
Bse1I	ACTGG	2 cut(s)	763, 1663
Bse21I	CCTNAGG	1 cut(s)	1314
Bse3DI	GCAATG	1 cut(s)	1007
Bse8I	GATNNNNATC	1 cut(s)	2343
BseBI	CCWGG	7 cut(s)	279, 296, 753, 953, 1143, 1625, 2466
BseDI	CCNNGG	6 cut(s)	725, 801, 1039, 1105, 1589, 2464
BseJI	GATNNNNATC	1 cut(s)	2343
BseLI	CCNNNNNNNGG	7 cut(s)	452, 726, 727, 728, 758, 1142, 2196
BseMI	GCAATG	1 cut(s)	1007
BseMII	CTCAG	7 cut(s)	495, 579, 1328, 2066, 2118, 2176, 2736
BseNI	ACTGG	2 cut(s)	763, 1663
BseSI	GKGCMC	3 cut(s)	1437, 1819, 2465
BseYI	CCCAGC	2 cut(s)	545, 1408
BsgI	GTGCAG	2 cut(s)	861, 2621
Bsh1236I	CGCG	2 cut(s)	66, 1835
BshNI	GGYRCC	3 cut(s)	38, 71, 1101
BshTI	ACCGGT	1 cut(s)	1958
BsiHKAI	GWGCWC	3 cut(s)	1437, 2140, 2545
BsiSI	CCGG	5 cut(s)	155, 1107, 1557, 1959, 2725
BslFI	GGGAC	3 cut(s)	589, 1823, 2693
BslI	CCNNNNNNNGG	7 cut(s)	452, 726, 727, 728, 758, 1142, 2196
BsmAI	GTCTC	2 cut(s)	2055, 2679
BsmFI	GGGAC	3 cut(s)	589, 1823, 2693
BsmI	GAATGC	2 cut(s)	2327, 2448
Bso31I	GGTCTC	1 cut(s)	2055
Bsp119I	TTCGAA	2 cut(s)	385, 1205
Bsp120I	GGGCCC	1 cut(s)	2461
Bsp1286I	GDGCHC	5 cut(s)	1437, 1819, 2140, 2465, 2545
Bsp1720I	GCTNAGC	1 cut(s)	851
BspACI	CCGC	6 cut(s)	36, 75, 1099, 1835, 2088, 2605
BspCNI	CTCAG	7 cut(s)	494, 578, 1327, 2065, 2119, 2175, 2737
BspFNI	CGCG	2 cut(s)	66, 1835
BspLI	GGNNCC	9 cut(s)	40, 73, 444, 478, 957, 1103, 2073, 2463, 2568
BspMAI	CTGCAG	5 cut(s)	556, 597, 1476, 2292, 2451
BspPI	GGATC	8 cut(s)	269, 471, 484, 960, 1635, 1700, 2561, 2574
BspT104I	TTCGAA	2 cut(s)	385, 1205
BspT107I	GGYRCC	3 cut(s)	38, 71, 1101
BspTNI	GGTCTC	1 cut(s)	2055
BsrDI	GCAATG	1 cut(s)	1007
BsrFI	RCCGGY	1 cut(s)	1958
BsrI	ACTGG	2 cut(s)	763, 1663
BssAI	RCCGGY	1 cut(s)	1958
BssECI	CCNNGG	6 cut(s)	725, 801, 1039, 1105, 1589, 2464
BssNI	GRCGYC	2 cut(s)	1102, 1769
BssSI	CACGAG	1 cut(s)	2486
BssT1I	CCWWGG	2 cut(s)	725, 801
Bst2BI	CACGAG	1 cut(s)	2486
Bst2UI	CCWGG	7 cut(s)	279, 296, 753, 953, 1143, 1625, 2466
Bst4CI	ACNGT	8 cut(s)	119, 375, 1181, 1238, 1250, 1794, 2000, 2524
Bst6I	CTCTTC	3 cut(s)	23, 1701, 1927
BstACI	GRCGYC	2 cut(s)	1102, 1769
BstBAI	YACGTR	1 cut(s)	2431
BstBI	TTCGAA	2 cut(s)	385, 1205
BstC8I	GCNNGC	8 cut(s)	552, 974, 1014, 1227, 1472, 1641, 2086, 2136
BstDEI	CTNAG	9 cut(s)	481, 565, 784, 851, 1314, 2052, 2127, 2162, 2745
BstDSI	CCRYGG	1 cut(s)	1039
BstEII	GGTNACC	1 cut(s)	1954
BstFNI	CGCG	2 cut(s)	66, 1835
BstH2I	RGCGCY	2 cut(s)	1105, 1736
BstHHI	GCGC	5 cut(s)	66, 526, 1104, 1735, 1835
BstMAI	GTCTC	2 cut(s)	2055, 2679
BstNI	CCWGG	7 cut(s)	279, 296, 753, 953, 1143, 1625, 2466
BstNSI	RCATGY	1 cut(s)	2322
BstPI	GGTNACC	1 cut(s)	1954
BstSFI	CTRYAG	5 cut(s)	552, 593, 1472, 2288, 2447
BstSLI	GKGCMC	3 cut(s)	1437, 1819, 2465
BstUI	CGCG	2 cut(s)	66, 1835
BstV2I	GAAGAC	3 cut(s)	376, 770, 1983
BstX2I	RGATCY	4 cut(s)	476, 694, 965, 2566
BstYI	RGATCY	4 cut(s)	476, 694, 965, 2566
Bsu36I	CCTNAGG	1 cut(s)	1314
BsuI	GTATCC	2 cut(s)	1238, 2420
BtgI	CCRYGG	1 cut(s)	1039
BtgZI	GCGATG	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	1536
BtsIMutI	CAGTG	3 cut(s)	1275, 1536, 2209
Cac8I	GCNNGC	8 cut(s)	552, 974, 1014, 1227, 1472, 1641, 2086, 2136
CfoI	GCGC	5 cut(s)	66, 526, 1104, 1735, 1835
Cfr10I	RCCGGY	1 cut(s)	1958
CpoI	CGGWCCG	1 cut(s)	2607
CseI	GACGC	2 cut(s)	482, 1777
Csp6I	GTAC	5 cut(s)	756, 1739, 1962, 2435, 2728
CspAI	ACCGGT	1 cut(s)	1958
CspI	CGGWCCG	1 cut(s)	2607
CviQI	GTAC	5 cut(s)	756, 1739, 1962, 2435, 2728
DdeI	CTNAG	9 cut(s)	481, 565, 784, 851, 1314, 2052, 2127, 2162, 2745
DinI	GGCGCC	1 cut(s)	1103
DraI	TTTAAA	1 cut(s)	1263
EaeI	YGGCCR	1 cut(s)	808
Eam1104I	CTCTTC	3 cut(s)	23, 1701, 1927
EarI	CTCTTC	3 cut(s)	23, 1701, 1927
Eco130I	CCWWGG	2 cut(s)	725, 801
Eco147I	AGGCCT	1 cut(s)	1588
Eco24I	GRGCYC	1 cut(s)	2465
Eco31I	GGTCTC	1 cut(s)	2055
Eco47I	GGWCC	3 cut(s)	746, 2090, 2607
Eco47III	AGCGCT	1 cut(s)	1734
Eco57I	CTGAAG	3 cut(s)	680, 1299, 1923
Eco81I	CCTNAGG	1 cut(s)	1314
Eco91I	GGTNACC	1 cut(s)	1954
EcoO109I	RGGNCCY	2 cut(s)	1637, 2462
EcoO65I	GGTNACC	1 cut(s)	1954
EcoRI	GAATTC	2 cut(s)	1124, 2181
EcoRII	CCWGG	7 cut(s)	277, 294, 751, 951, 1141, 1623, 2464
EcoT14I	CCWWGG	2 cut(s)	725, 801
EcoT22I	ATGCAT	1 cut(s)	2715
EcoT38I	GRGCYC	1 cut(s)	2465
EgeI	GGCGCC	1 cut(s)	1103
EheI	GGCGCC	1 cut(s)	1103
ErhI	CCWWGG	2 cut(s)	725, 801
FalI	AAGNNNNNCTT	2 cut(s)	1364, 1396
FaqI	GGGAC	3 cut(s)	589, 1823, 2693
FbaI	TGATCA	1 cut(s)	604
FblI	GTMKAC	3 cut(s)	414, 1004, 1320
FriOI	GRGCYC	1 cut(s)	2465
FspBI	CTAG	7 cut(s)	1440, 1634, 1682, 1710, 2351, 2397, 2571
GlaI	GCGC	5 cut(s)	65, 525, 1103, 1734, 1834
GsaI	CCCAGC	2 cut(s)	549, 1412
GsuI	CTGGAG	3 cut(s)	28, 228, 2654
HaeII	RGCGCY	2 cut(s)	1105, 1736
HapII	CCGG	5 cut(s)	155, 1107, 1557, 1959, 2725
HgaI	GACGC	2 cut(s)	482, 1777
HhaI	GCGC	5 cut(s)	66, 526, 1104, 1735, 1835
Hin1I	GRCGYC	2 cut(s)	1102, 1769
Hin6I	GCGC	5 cut(s)	64, 524, 1102, 1733, 1833
HinP1I	GCGC	5 cut(s)	64, 524, 1102, 1733, 1833
HincII	GTYRAC	4 cut(s)	292, 415, 1398, 2299
HindII	GTYRAC	4 cut(s)	292, 415, 1398, 2299
HindIII	AAGCTT	1 cut(s)	1550
HinfI	GANTC	7 cut(s)	151, 314, 518, 1034, 1355, 2123, 2300
HpaII	CCGG	5 cut(s)	155, 1107, 1557, 1959, 2725
HphI	GGTGA	9 cut(s)	65, 174, 362, 709, 1396, 1622, 1763, 1909, 1966
Hpy166II	GTNNAC	9 cut(s)	292, 401, 415, 487, 1005, 1321, 1398, 1435, 2299
Hpy188III	TCNNGA	9 cut(s)	45, 148, 167, 245, 692, 1031, 1121, 2486, 2564
Hpy8I	GTNNAC	9 cut(s)	292, 401, 415, 487, 1005, 1321, 1398, 1435, 2299
Hpy99I	CGWCG	3 cut(s)	204, 225, 1771
HpyAV	CCTTC	9 cut(s)	15, 200, 655, 829, 930, 1212, 1607, 2062, 2653
HpyCH4III	ACNGT	8 cut(s)	119, 375, 1181, 1238, 1250, 1794, 2000, 2524
HpyCH4IV	ACGT	4 cut(s)	202, 1895, 1939, 2430
HpyF3I	CTNAG	9 cut(s)	481, 565, 784, 851, 1314, 2052, 2127, 2162, 2745
HpySE526I	ACGT	4 cut(s)	202, 1895, 1939, 2430
Hsp92I	GRCGYC	2 cut(s)	1102, 1769
HspAI	GCGC	5 cut(s)	64, 524, 1102, 1733, 1833
KasI	GGCGCC	1 cut(s)	1101
Ksp22I	TGATCA	1 cut(s)	604
LmnI	GCTCC	6 cut(s)	961, 1061, 1091, 1222, 2077, 2242
MaeI	CTAG	7 cut(s)	1440, 1634, 1682, 1710, 2351, 2397, 2571
MaeII	ACGT	4 cut(s)	202, 1895, 1939, 2430
MaeIII	GTNAC	7 cut(s)	8, 1301, 1954, 2314, 2451, 2483, 2618
MfeI	CAATTG	2 cut(s)	881, 1083
MflI	RGATCY	4 cut(s)	476, 694, 965, 2566
MhlI	GDGCHC	5 cut(s)	1437, 1819, 2140, 2465, 2545
MlsI	TGGCCA	1 cut(s)	810
MluNI	TGGCCA	1 cut(s)	810
Mly113I	GGCGCC	1 cut(s)	1102
MlyI	GAGTC	1 cut(s)	2294
MmeI	TCCRAC	3 cut(s)	1163, 1222, 2010
Mox20I	TGGCCA	1 cut(s)	810
Mph1103I	ATGCAT	1 cut(s)	2715
MroXI	GAANNNNTTC	1 cut(s)	397
MscI	TGGCCA	1 cut(s)	810
MseI	TTAA	5 cut(s)	770, 1214, 1262, 2108, 2717
MslI	CAYNNNNRTG	1 cut(s)	1422
Msp20I	TGGCCA	1 cut(s)	810
MspA1I	CMGCKG	4 cut(s)	598, 1412, 2605, 2632
MspI	CCGG	5 cut(s)	155, 1107, 1557, 1959, 2725
MunI	CAATTG	2 cut(s)	881, 1083
Mva1269I	GAATGC	2 cut(s)	2327, 2448
MvaI	CCWGG	7 cut(s)	279, 296, 753, 953, 1143, 1625, 2466
MvnI	CGCG	2 cut(s)	66, 1835
NarI	GGCGCC	1 cut(s)	1102
NciI	CCSGG	3 cut(s)	156, 1107, 1558
NlaIV	GGNNCC	9 cut(s)	40, 73, 444, 478, 957, 1103, 2073, 2463, 2568
NmeAIII	GCCGAG	2 cut(s)	1570, 1809
NmuCI	GTSAC	6 cut(s)	8, 1301, 1954, 2451, 2483, 2618
NsiI	ATGCAT	1 cut(s)	2715
NspI	RCATGY	1 cut(s)	2322
NspV	TTCGAA	2 cut(s)	385, 1205
OliI	CACNNNNGTG	1 cut(s)	1422
PceI	AGGCCT	1 cut(s)	1588
PciI	ACATGT	1 cut(s)	2318
PcsI	WCGNNNNNNNCGW	1 cut(s)	1297
PctI	GAATGC	2 cut(s)	2327, 2448
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	6 cut(s)	151, 314, 518, 1034, 1355, 2123
PflFI	GACNNNGTC	1 cut(s)	219
PinAI	ACCGGT	1 cut(s)	1958
PleI	GAGTC	1 cut(s)	2294
PluTI	GGCGCC	1 cut(s)	1105
PpsI	GAGTC	1 cut(s)	2294
Ppu21I	YACGTR	1 cut(s)	2431
PscI	ACATGT	1 cut(s)	2318
PshBI	ATTAAT	1 cut(s)	770
PsiI	TTATAA	1 cut(s)	2373
Psp1406I	AACGTT	1 cut(s)	1939
Psp6I	CCWGG	7 cut(s)	277, 294, 751, 951, 1141, 1623, 2464
PspEI	GGTNACC	1 cut(s)	1954
PspFI	CCCAGC	2 cut(s)	545, 1408
PspGI	CCWGG	7 cut(s)	277, 294, 751, 951, 1141, 1623, 2464
PspN4I	GGNNCC	9 cut(s)	40, 73, 444, 478, 957, 1103, 2073, 2463, 2568
PspOMI	GGGCCC	1 cut(s)	2461
PstI	CTGCAG	5 cut(s)	556, 597, 1476, 2292, 2451
PsuI	RGATCY	4 cut(s)	476, 694, 965, 2566
PsyI	GACNNNGTC	1 cut(s)	219
PvuII	CAGCTG	3 cut(s)	598, 1412, 2632
RsaI	GTAC	5 cut(s)	757, 1740, 1963, 2436, 2729
RsaNI	GTAC	5 cut(s)	756, 1739, 1962, 2435, 2728
RseI	CAYNNNNRTG	1 cut(s)	1422
Rsr2I	CGGWCCG	1 cut(s)	2607
RsrII	CGGWCCG	1 cut(s)	2607
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	5 cut(s)	770, 1214, 1262, 2108, 2717
SbfI	CCTGCAGG	1 cut(s)	556
SchI	GAGTC	1 cut(s)	2294
SdaI	CCTGCAGG	1 cut(s)	556
SduI	GDGCHC	5 cut(s)	1437, 1819, 2140, 2465, 2545
SfcI	CTRYAG	5 cut(s)	552, 593, 1472, 2288, 2447
SfiI	GGCCNNNNNGGCC	1 cut(s)	556
SfoI	GGCGCC	1 cut(s)	1103
SfuI	TTCGAA	2 cut(s)	385, 1205
SinI	GGWCC	3 cut(s)	746, 2090, 2607
SmiMI	CAYNNNNRTG	1 cut(s)	1422
SmlI	CTYRAG	1 cut(s)	2499
SmoI	CTYRAG	1 cut(s)	2499
Sse8387I	CCTGCAGG	1 cut(s)	556
SseBI	AGGCCT	1 cut(s)	1588
SsiI	CCGC	6 cut(s)	36, 75, 1099, 1835, 2088, 2605
SspDI	GGCGCC	1 cut(s)	1101
SspI	AATATT	1 cut(s)	1929
SspMI	CTAG	7 cut(s)	1440, 1634, 1682, 1710, 2351, 2397, 2571
StuI	AGGCCT	1 cut(s)	1588
StyI	CCWWGG	2 cut(s)	725, 801
TaaI	ACNGT	8 cut(s)	119, 375, 1181, 1238, 1250, 1794, 2000, 2524
TaiI	ACGT	4 cut(s)	205, 1898, 1942, 2433
TaqII	GACCGA	1 cut(s)	2624
TauI	GCSGC	1 cut(s)	1102
TfiI	GAWTC	6 cut(s)	151, 314, 518, 1034, 1355, 2123
Tru1I	TTAA	5 cut(s)	770, 1214, 1262, 2108, 2717
Tru9I	TTAA	5 cut(s)	770, 1214, 1262, 2108, 2717
TscAI	CASTG	3 cut(s)	1282, 1536, 2209
TseFI	GTSAC	6 cut(s)	8, 1301, 1954, 2451, 2483, 2618
Tsp45I	GTSAC	6 cut(s)	8, 1301, 1954, 2451, 2483, 2618
TspDTI	ATGAA	7 cut(s)	149, 954, 1511, 1664, 1668, 1989, 2766
TspGWI	ACGGA	1 cut(s)	1289
TspRI	CASTG	3 cut(s)	1282, 1536, 2209
Tth111I	GACNNNGTC	1 cut(s)	219
VneI	GTGCAC	1 cut(s)	1433
VpaK11BI	GGWCC	3 cut(s)	746, 2090, 2607
VspI	ATTAAT	1 cut(s)	770
XapI	RAATTY	5 cut(s)	1124, 1164, 1337, 2181, 2738
XceI	RCATGY	1 cut(s)	2322
XmiI	GTMKAC	3 cut(s)	414, 1004, 1320
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	7 cut(s)	1440, 1634, 1682, 1710, 2351, 2397, 2571
Zsp2I	ATGCAT	1 cut(s)	2715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.