Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Reverse (-)

16795572 .. 16799039

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13200.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGTCTGAGAAACCAAGTTTCGAACCGTTCCGGCTATTCTCATCATCAGGGTCAGGATTATTCGACCAACCAGAGCCCCCTCTTCCTCCTCCACCTCCTTGTGTCGAAGTGCTTCCCTCTCAGAAATCGCCGTCTGGGAAGTTCACTGTGGAGCCGGTTGAATTGGGTGGACTTACATTGCTCAAGGGCCGAGTTAGTACTCAAGAGGTTTTTACGCTATCCAACTCCGATTTAGTTCCGGGGAAATATGAAGGGGGACTAAAGCTATGGGAAGGTTCACTTGATCTAGTAAAAGCTCTTAGCTCTGAAGTTCAAAATGGACATCTATCATTTGCTGGTAAACGAGTTTTAGAGCTTGGCTGTGGTCATGGACTTCCCGGTATCGTTGCTTGCATTGAGGGTGCAGCTGCTATTCATTTCCAGGACTTCAATGCTGAGGTCCTGCAATGTCTCACAATACCCAATGTAAATGCAAATGTTCCAAGCTTCCAACCTCCAGCATTGCAAGAGACAAAGTGTGATACAGGGATGGAAATTCGTTTTTTTGCTGGGGACTGGTGTGAAGTCCATAACCTTCTTCCCTATGCACAAAACAATGAGAAGGATGTTAATGTTAGTTCAGGGCAAAATCCAGATCCTCACTATGATATTATTTTAATGGCAGAGACAGTTTACTCAATCTCCACCCTGCAACATCTCTATGAACTCATAAAGAAGCCAAGAAGCATTATTTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

248

Amino Acids

26.9

Weight (kDa)

4.87

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	632
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	202
AgsI	TTSAA	3 cut(s)	164, 317, 433
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	6 cut(s)	268, 299, 306, 358, 410, 489
AluI	AGCT	6 cut(s)	268, 299, 306, 358, 410, 489
Alw26I	GTCTC	3 cut(s)	458, 506, 662
AlwI	GGATC	1 cut(s)	632
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	407, 410
ApoI	RAATTY	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	190, 442
AsuC2I	CCSGG	2 cut(s)	243, 381
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	397, 419
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	425
BcnI	CCSGG	2 cut(s)	243, 381
BcoDI	GTCTC	3 cut(s)	458, 506, 662
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	2 cut(s)	408, 411
BlsI	GCNGC	2 cut(s)	409, 412
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	3 cut(s)	243, 381, 425
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	190, 442
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	3 cut(s)	243, 381, 425
BpmI	CTGGAG	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	170, 189
BpuMI	CCSGG	2 cut(s)	243, 381
BsaJI	CCNNGG	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	563
Bse3DI	GCAATG	3 cut(s)	179, 455, 503
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	2 cut(s)	537, 613
BseMI	GCAATG	3 cut(s)	179, 455, 503
BseMII	CTCAG	2 cut(s)	137, 429
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	397, 419
BseYI	CCCAGC	1 cut(s)	551
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	4 cut(s)	34, 158, 242, 381
BslFI	GGGAC	2 cut(s)	273, 569
BsmAI	GTCTC	3 cut(s)	458, 506, 662
BsmFI	GGGAC	2 cut(s)	273, 569
BsnI	GGCC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	286, 637
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	136, 430
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	632
BspT104I	TTCGAA	1 cut(s)	24
BsrDI	GCAATG	3 cut(s)	179, 455, 503
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	286, 637
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	3 cut(s)	30, 151, 673
Bst6I	CTCTTC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	4 cut(s)	9, 123, 302, 438
BstF5I	GGATG	2 cut(s)	537, 613
BstKTI	GATC	2 cut(s)	289, 640
BstMAI	GTCTC	3 cut(s)	458, 506, 662
BstMBI	GATC	2 cut(s)	286, 637
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	3 cut(s)	241, 379, 423
BstV1I	GCAGC	2 cut(s)	397, 419
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	537, 613
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	190, 442
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	371
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	4 cut(s)	9, 123, 302, 438
DpnI	GATC	2 cut(s)	288, 639
DpnII	GATC	2 cut(s)	286, 637
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	1 cut(s)	374
FaiI	YATR	8 cut(s)	252, 271, 372, 573, 588, 648, 705, 713
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	2 cut(s)	273, 569
FatI	CATG	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	408, 411
FokI	GGATG	2 cut(s)	544, 620
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	408, 411
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	2 cut(s)	408, 411
GsaI	CCCAGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	4 cut(s)	34, 158, 242, 381
Hin1II	CATG	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	4 cut(s)	34, 158, 242, 381
Hpy166II	GTNNAC	5 cut(s)	147, 173, 281, 344, 676
Hpy188I	TCNGA	4 cut(s)	10, 126, 232, 310
Hpy188III	TCNNGA	3 cut(s)	57, 206, 635
Hpy8I	GTNNAC	5 cut(s)	147, 173, 281, 344, 676
HpyAV	CCTTC	4 cut(s)	248, 269, 587, 598
HpyCH4III	ACNGT	3 cut(s)	30, 151, 673
HpyCH4V	TGCA	7 cut(s)	396, 407, 448, 476, 508, 590, 694
HpyF3I	CTNAG	4 cut(s)	9, 123, 302, 438
Hsp92II	CATG	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	286, 637
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	2 cut(s)	397, 419
MaeI	CTAG	1 cut(s)	290
MalI	GATC	2 cut(s)	288, 639
MboI	GATC	2 cut(s)	286, 637
MboII	GAAGA	2 cut(s)	77, 572
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	2 cut(s)	164, 537
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	249, 517
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	2 cut(s)	612, 659
MslI	CAYNNNNRTG	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	4 cut(s)	34, 158, 242, 381
MspR9I	CCNGG	3 cut(s)	243, 381, 425
MvaI	CCWGG	1 cut(s)	425
NciI	CCSGG	2 cut(s)	243, 381
NdeII	GATC	2 cut(s)	286, 637
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	1 cut(s)	156
NmeAIII	GCCGAG	1 cut(s)	218
NspV	TTCGAA	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	114
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	409, 412
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	190, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	702
SaqAI	TTAA	2 cut(s)	612, 659
SatI	GCNGC	2 cut(s)	408, 411
Sau3AI	GATC	2 cut(s)	286, 637
Sau96I	GGNCC	2 cut(s)	190, 442
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	243, 381, 425
SduI	GDGCHC	1 cut(s)	81
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	185, 204
SmoI	CTYRAG	2 cut(s)	185, 204
Sse9I	AATT	2 cut(s)	164, 537
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	3 cut(s)	241, 379, 423
TaaI	ACNGT	3 cut(s)	30, 151, 673
TaqI	TCGA	3 cut(s)	24, 66, 108
TasI	AATT	2 cut(s)	164, 537
TatI	WGTACW	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	612, 659
Tru9I	TTAA	2 cut(s)	612, 659
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	2 cut(s)	407, 410
TspDTI	ATGAA	3 cut(s)	267, 407, 720
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.