Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Reverse (-)

4407880 .. 4408625

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28817

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGACTTCCTGGTATCTTTGCCTGCCTTGAGGGTGCAGCTGCTATTCATTTCTAGGACTTCAATGCTAAGATCCTGCAATGTCGACACTAATGTAAATGCAAATGTTCCAAGCTTCCAACCCCGAGCATTGCAAGAGACAAAGTGTGATAAGGGGGTGGAAATTCGTTTTTTTGCTGGGGACTGGCGTGAAGTCCATAACCTTCTTCCCTATGCACAAAACAATGAGAAGGATGTTAAGTGCATCACTCGTCCTCATGGAGTAGTCTACTTGGCAGCCAAGAAGCATTATTTTGGAGTAGGAGGGGGAACTCGAAAGTTCCTATCAGTGGTGAAGAAAGATGGTGAGCTAGTTGGAAATTTAGACTCATGTTTAAAAAATTACAGAGCACTATATCACCATAGAATTTGTTGGCTCTTGTTTCCTATCTACCTGATTCATTGGGTGAAAGTGAATAGGAATACATCATACTACAATCATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

161

Amino Acids

18.63

Weight (kDa)

9.56

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	84, 267
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	3 cut(s)	162, 358, 405
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	40, 114, 349
AluI	AGCT	3 cut(s)	40, 114, 349
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	123
ApeKI	GCWGC	3 cut(s)	37, 40, 275
ApoI	RAATTY	3 cut(s)	162, 358, 405
AsuHPI	GGTGA	4 cut(s)	343, 356, 389, 457
AvaI	CYCGRG	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	3 cut(s)	27, 49, 287
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	54, 350
BisI	GCNGC	3 cut(s)	38, 41, 276
BlsI	GCNGC	3 cut(s)	39, 42, 277
Bme1390I	CCNGG	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	2 cut(s)	85, 128
BseBI	CCWGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	2 cut(s)	85, 128
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	3 cut(s)	27, 49, 287
BseYI	CCCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	66
BsrDI	GCAATG	2 cut(s)	85, 128
BsrI	ACTGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	27, 49, 287
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	24
CviAII	CATG	3 cut(s)	257, 369, 479
CviJI	RGCY	5 cut(s)	40, 114, 278, 349, 415
CviKI_1	RGCY	5 cut(s)	40, 114, 278, 349, 415
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
DraI	TTTAAA	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	9
FaeI	CATG	3 cut(s)	260, 372, 482
FaiI	YATR	9 cut(s)	198, 213, 258, 370, 394, 402, 469, 480, 484
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	3 cut(s)	256, 368, 478
FblI	GTMKAC	2 cut(s)	84, 267
Fnu4HI	GCNGC	3 cut(s)	38, 41, 276
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	3 cut(s)	38, 41, 276
FspBI	CTAG	2 cut(s)	54, 350
GluI	GCNGC	3 cut(s)	38, 41, 276
GsaI	CCCAGC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	260, 372, 482
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	2 cut(s)	365, 436
HphI	GGTGA	4 cut(s)	343, 356, 389, 457
Hpy166II	GTNNAC	2 cut(s)	85, 268
Hpy8I	GTNNAC	2 cut(s)	85, 268
HpyAV	CCTTC	2 cut(s)	212, 223
HpyCH4V	TGCA	6 cut(s)	37, 78, 101, 133, 215, 243
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	260, 372, 482
Kzo9I	GATC	1 cut(s)	71
LpnPI	CCDG	6 cut(s)	23, 36, 88, 162, 169, 446
Lsp1109I	GCAGC	3 cut(s)	27, 49, 287
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	2 cut(s)	54, 350
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	2 cut(s)	197, 346
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	4 cut(s)	162, 358, 379, 405
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	142, 334
MnlI	CCTC	3 cut(s)	24, 264, 296
MseI	TTAA	2 cut(s)	237, 374
MspA1I	CMGCKG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	3 cut(s)	260, 372, 482
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	3 cut(s)	39, 42, 277
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	40
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	237, 374
SatI	GCNGC	3 cut(s)	38, 41, 276
Sau3AI	GATC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	5 cut(s)	42, 116, 204, 351, 435
SfaNI	GCATC	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	4 cut(s)	162, 358, 379, 405
SspMI	CTAG	2 cut(s)	54, 350
StyD4I	CCNGG	1 cut(s)	9
TaqI	TCGA	2 cut(s)	84, 313
TasI	AATT	4 cut(s)	162, 358, 379, 405
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	2 cut(s)	237, 374
Tru9I	TTAA	2 cut(s)	237, 374
TscAI	CASTG	1 cut(s)	333
TseI	GCWGC	3 cut(s)	37, 40, 275
TspDTI	ATGAA	2 cut(s)	37, 428
TspRI	CASTG	1 cut(s)	333
XapI	RAATTY	3 cut(s)	162, 358, 405
XmiI	GTMKAC	2 cut(s)	84, 267
XspI	CTAG	2 cut(s)	54, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.