RchiOBHm_Chr1g0331231

Histidine protein methyltransferase 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006354
Physical Location & Seq
Reverse (-)
21071170 .. 21071919
750 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56026

Sequence Viewer

Length: 348 bp
ATGGAGTCCGAGGTGAGAGAGCTAGCTTTCTTCCCTTATACCGATTTCCAATCTGAAACTGAATACGATTTCTGCGTTTCTCAGAAACCAAGTTTCGAACCATTTCGGCTCTTCTCCTCATCAGGGTCAGGATTATTTGACCAATCAGAGCCCCCTGTTCCTCCTCCACCTCCTTGCGTCGAAGTGCTTCCCTCTCAGATTTCGCAGTCTGTGAAGTACAGTGTGGAGCCAGTAGAATTGGGTGGACTTACATTGCTCAAGGGCCGAGTTAGTACTCAAGATGTTTTTAAGCTGTCCAACTCCGATTTAGTTCCCGGGAAATATGAAGCTATGGGAAGGTTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

115

Amino Acids

12.79

Weight (kDa)

4.45

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 218, 274
AfiI CCNNNNNNNGG 1 cut(s) 123
AluBI AGCT 4 cut(s) 22, 26, 292, 329
AluI AGCT 4 cut(s) 22, 26, 292, 329
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 1 cut(s) 262
Asp700I GAANNNNTTC 2 cut(s) 102, 186
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 2 cut(s) 315, 316
AsuHPI GGTGA 1 cut(s) 25
AsuII TTCGAA 1 cut(s) 96
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 314
BanII GRGCYC 1 cut(s) 153
BcnI CCSGG 2 cut(s) 315, 316
BfaI CTAG 1 cut(s) 23
BmcAI AGTACT 1 cut(s) 274
Bme1390I CCNGG 2 cut(s) 315, 316
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 2 cut(s) 315, 316
BmtI GCTAGC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 96
BpuEI CTTGAG 2 cut(s) 242, 261
BpuMI CCSGG 2 cut(s) 315, 316
BsaJI CCNNGG 2 cut(s) 9, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 9, 314
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 2 cut(s) 95, 209
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 2 cut(s) 106, 153
BshFI GGCC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 314
Bsp119I TTCGAA 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 153
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 2 cut(s) 94, 208
BspLI GGNNCC 1 cut(s) 228
BspOI GCTAGC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 251
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 9, 314
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 81, 195
BstSCI CCNGG 2 cut(s) 313, 314
BsuRI GGCC 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 262
Cfr9I CCCGGG 1 cut(s) 314
CseI GACGC 1 cut(s) 166
Csp6I GTAC 2 cut(s) 217, 273
CviJI RGCY 8 cut(s) 22, 26, 109, 151, 229, 264, 292, 329
CviKI_1 RGCY 8 cut(s) 22, 26, 109, 151, 229, 264, 292, 329
CviQI GTAC 2 cut(s) 217, 273
DdeI CTNAG 2 cut(s) 81, 195
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 153
FaiI YATR 3 cut(s) 39, 324, 332
FalI AAGNNNNNCTT 1 cut(s) 328
FriOI GRGCYC 1 cut(s) 153
FspBI CTAG 1 cut(s) 23
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 166
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 245, 342
Hpy188I TCNGA 6 cut(s) 10, 55, 84, 148, 198, 304
Hpy188III TCNNGA 2 cut(s) 129, 278
Hpy8I GTNNAC 2 cut(s) 245, 342
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 81, 195
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 5 cut(s) 108, 114, 168, 243, 328
MaeI CTAG 1 cut(s) 23
MboII GAAGA 2 cut(s) 22, 103
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 236
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 6 cut(s) 4, 127, 171, 174, 180, 202
MroXI GAANNNNTTC 2 cut(s) 102, 186
MseI TTAA 1 cut(s) 288
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 2 cut(s) 315, 316
NciI CCSGG 2 cut(s) 315, 316
NheI GCTAGC 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 290
NspV TTCGAA 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdmI GAANNNNTTC 2 cut(s) 102, 186
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 262
RsaI GTAC 2 cut(s) 218, 274
RsaNI GTAC 2 cut(s) 217, 273
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 288
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 315, 316
SduI GDGCHC 1 cut(s) 153
SetI ASST 7 cut(s) 15, 24, 28, 172, 294, 331, 341
SfuI TTCGAA 1 cut(s) 96
SmaI CCCGGG 1 cut(s) 316
SmlI CTYRAG 2 cut(s) 257, 276
SmoI CTYRAG 2 cut(s) 257, 276
Sse9I AATT 1 cut(s) 236
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 313, 314
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 96, 180
TasI AATT 1 cut(s) 236
TatI WGTACW 2 cut(s) 216, 272
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 339
TspMI CCCGGG 1 cut(s) 314
TspRI CASTG 1 cut(s) 226
XmaI CCCGGG 1 cut(s) 314
XmnI GAANNNNTTC 2 cut(s) 102, 186
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.