Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Reverse (-)

65215180 .. 65217362

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G037010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGCTTGGTTGTGGCCATGGACTTCCTGGTATCTTTGCCTGCCTTGAGCTGCTATTCATTTCTAGGACTTCAATGCTAAGATCCTGCAATGTCGACACTAATGTAAATGCAAATGTTCCAAGCTTCCAACCCCGAGCATTGCAAGAGACAAAGTGTGATAAGGGGGTGGAAATTCGTTTTTTTGCTGGGGACTGGCGTGAAGTCCATAACCTTCTTCCCTATGCACAAAACAATGAGAAGGATGTTAAGGTTAGTTCAAGGCAAAAGACAATTTACTCAATCTCCACTCTTCAGCATCTCTATGAACTCATAAAGAAGTGCATCACTCGTCCTCATGGAGTAGTCTACTTGGCAGCCAAGAAGCATTATTTTGGAGTAGGAGGGGGAACTCGAAAGTTCCTATCAGTGGTGAAGAAAGATGTCAGCATCAGTATTGCTGAAATACAATCTTGCGGAAATGCCGCCATCGCTTTGGAACTTTGGAGCTTGAATTTCCATCAATATCGACCACAAACTATTGAGGATTTTAATATTCCAATCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

182

Amino Acids

20.52

Weight (kDa)

8.91

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	96, 348
AciI	CCGC	2 cut(s)	456, 465
AclWI	GGATC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	174, 493
AcuI	CTGAAG	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	3 cut(s)	75, 261, 493
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	4 cut(s)	7, 52, 126, 489
AluI	AGCT	4 cut(s)	7, 52, 126, 489
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	52, 356
ApoI	RAATTY	2 cut(s)	174, 493
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	39, 368
BccI	CCATC	2 cut(s)	476, 507
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	66
BisI	GCNGC	3 cut(s)	53, 357, 465
BlsI	GCNGC	3 cut(s)	54, 358, 466
Bme1390I	CCNGG	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	3 cut(s)	307, 333, 438
BpuEI	CTTGAG	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	2 cut(s)	97, 140
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	2 cut(s)	97, 140
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	39, 368
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	18
BsoBI	CYCGRG	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	83
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	2 cut(s)	456, 465
BspANI	GGCC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	78
BsrDI	GCAATG	2 cut(s)	97, 140
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	86
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	39, 368
BstX2I	RGATCY	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	43
CviAII	CATG	2 cut(s)	20, 338
CviJI	RGCY	6 cut(s)	7, 18, 52, 126, 359, 489
CviKI_1	RGCY	6 cut(s)	7, 18, 52, 126, 359, 489
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	2 cut(s)	23, 341
FaiI	YATR	6 cut(s)	21, 210, 225, 306, 314, 339
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	19, 337
FblI	GTMKAC	2 cut(s)	96, 348
Fnu4HI	GCNGC	3 cut(s)	53, 357, 465
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	53, 357, 465
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	3 cut(s)	53, 357, 465
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	23, 341
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	124
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	97, 349
Hpy8I	GTNNAC	2 cut(s)	97, 349
HpyAV	CCTTC	2 cut(s)	224, 235
HpyCH4V	TGCA	5 cut(s)	90, 113, 145, 227, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	23, 341
Kzo9I	GATC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	4, 486
LpnPI	CCDG	6 cut(s)	15, 42, 55, 100, 174, 181
Lsp1109I	GCAGC	2 cut(s)	39, 368
LweI	GCATC	3 cut(s)	307, 333, 438
MaeI	CTAG	1 cut(s)	66
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	3 cut(s)	209, 284, 427
MflI	RGATCY	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	3 cut(s)	174, 273, 493
MluNI	TGGCCA	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	3 cut(s)	345, 377, 517
Mox20I	TGGCCA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	2 cut(s)	249, 531
MslI	CAYNNNNRTG	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	2 cut(s)	23, 341
PkrI	GCNGC	3 cut(s)	54, 358, 466
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	303
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	249, 531
SatI	GCNGC	3 cut(s)	53, 357, 465
Sau3AI	GATC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	6 cut(s)	9, 54, 128, 216, 255, 491
SfaNI	GCATC	3 cut(s)	307, 333, 438
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	174, 273, 493
SsiI	CCGC	2 cut(s)	456, 465
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	19
TaqI	TCGA	3 cut(s)	96, 394, 508
TasI	AATT	3 cut(s)	174, 273, 493
TauI	GCSGC	1 cut(s)	467
Tru1I	TTAA	2 cut(s)	249, 531
Tru9I	TTAA	2 cut(s)	249, 531
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	2 cut(s)	52, 356
TspDTI	ATGAA	2 cut(s)	49, 321
TspRI	CASTG	1 cut(s)	414
XapI	RAATTY	2 cut(s)	174, 493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XmiI	GTMKAC	2 cut(s)	96, 348
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.