Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Forward (+)

13572929 .. 13576492

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G166800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGTCTGAGAAACCAAGTTTCGAACCGTTTCGGCTGTTTTCATCATCAGGGTCAGGATTTCTTGAACAATCAGAGCCTCCTCTTCCCCCTCCGCCTCCTTGCGTCGAAGTGTTGCCCTCCGAGATTTTGCCCTCTGTGAAGTACGCTGTGGAGCCAGTTCAGTTGGGTGGACTTACTTTGCTCAAGGGCCGCGTTAGTACTCAAGAGGTTTTCACGCTATCCAACTCCGATTTAGTTCCTGGGAAATATGAAGGGGGATTAAAGCTATGGGAAGGTTCTCTTGATCTAGTTAAAGCTCTAAGCTCTGAAGTTCAAAATGGACATTTATCGTTTACCGGTAAACGAGTTTTAGAGCTTGGTTGTGGTCATGGACTTCCTGGTATCTTTGCTTGCCTTAAGGGTGCAGCTGCCATTCATTTCCAGGACTTCAATGCAGAGGTCCTGCAGTGTCTCACCATACCTAATGTAAATTCAAATGTTCCAAGCTTCCAACCCCCAGCATTGCAAGTTACAAAGTGTGATGCGGGGACGGAAATTCGTTTTTTTGCTGGCAACTGGCGTGAAATCCATAAGCTTCTTCCCTATGTACAAAACATTGAGAAGGATTTTAATGTTAGTACAGGGAAAAGTCTAGATGCTCAGTATGATATTATTTTAATGGCAGAGACAGTTTACTCGATCTCTGCTCTCCCACATCTCTATGAACTCATAAAGAAGTGCATAACTCCTTCTCATGGAGTAGTATACATGGCTGCCAAGAAGCATTATTTTGGAGTCGGTGGGGGAACTCGAAGGTTCCTATCTATTGTGGAGAAAGATGGGGTCTTGGCTTCTAGCATGGTCGCTGAAGTTGCAGATGGTTCTTCTAATGTCCGAGAGGTATGGAAGCTTTCGTTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

302

Amino Acids

32.76

Weight (kDa)

6.0

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	747
AccII	CGCG	1 cut(s)	195
AciI	CCGC	3 cut(s)	95, 193, 527
AcsI	RAATTY	2 cut(s)	472, 537
AcuI	CTGAAG	2 cut(s)	330, 870
AfaI	GTAC	4 cut(s)	146, 202, 591, 622
AfiI	CCNNNNNNNGG	1 cut(s)	737
AflII	CTTAAG	1 cut(s)	398
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	68, 317, 433, 477
AjnI	CCWGG	3 cut(s)	241, 379, 423
AluBI	AGCT	8 cut(s)	268, 299, 306, 358, 410, 489, 577, 892
AluI	AGCT	8 cut(s)	268, 299, 306, 358, 410, 489, 577, 892
Alw26I	GTCTC	2 cut(s)	458, 662
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	3 cut(s)	407, 410, 755
ApoI	RAATTY	2 cut(s)	472, 537
AsiGI	ACCGGT	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	190, 442
AsuHPI	GGTGA	1 cut(s)	448
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	442
BbvI	GCAGC	3 cut(s)	397, 419, 742
BccI	CCATC	2 cut(s)	815, 854
BciT130I	CCWGG	3 cut(s)	243, 381, 425
BcoDI	GTCTC	2 cut(s)	458, 662
BfaI	CTAG	3 cut(s)	290, 635, 837
BfmI	CTRYAG	1 cut(s)	446
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	4 cut(s)	193, 408, 411, 756
BlsI	GCNGC	4 cut(s)	194, 409, 412, 757
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	3 cut(s)	243, 381, 425
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	190, 442
BmiI	GGNNCC	2 cut(s)	156, 800
BmrFI	CCNGG	3 cut(s)	243, 381, 425
BmsI	GCATC	2 cut(s)	514, 628
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	170, 189
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	2 cut(s)	158, 563
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	3 cut(s)	243, 381, 425
BseDI	CCNNGG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	656
BseNI	ACTGG	2 cut(s)	158, 563
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	397, 419, 742
BseYI	CCCAGC	1 cut(s)	499
BsgI	GTGCAG	1 cut(s)	426
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	192
BshTI	ACCGGT	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	2 cut(s)	458, 662
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	589
Bsp143I	GATC	2 cut(s)	286, 681
BspACI	CCGC	3 cut(s)	95, 193, 527
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	156, 800
BspMAI	CTGCAG	1 cut(s)	450
BspT104I	TTCGAA	1 cut(s)	24
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	338
BsrGI	TGTACA	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	158, 563
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	286, 681
BssNAI	GTATAC	1 cut(s)	748
Bst1107I	GTATAC	1 cut(s)	748
Bst2UI	CCWGG	3 cut(s)	243, 381, 425
Bst4CI	ACNGT	2 cut(s)	30, 673
Bst6I	CTCTTC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	589
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	394, 553
BstDEI	CTNAG	3 cut(s)	9, 302, 642
BstFNI	CGCG	1 cut(s)	195
BstKTI	GATC	2 cut(s)	289, 684
BstMAI	GTCTC	2 cut(s)	458, 662
BstMBI	GATC	2 cut(s)	286, 681
BstMWI	GCNNNNNNNGC	1 cut(s)	854
BstNI	CCWGG	3 cut(s)	243, 381, 425
BstSCI	CCNGG	3 cut(s)	241, 379, 423
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	397, 419, 742
BstZ17I	GTATAC	1 cut(s)	748
BsuRI	GGCC	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	394, 553
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	190, 442
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	4 cut(s)	145, 201, 590, 621
CspAI	ACCGGT	1 cut(s)	338
CviAII	CATG	4 cut(s)	371, 737, 751, 841
CviQI	GTAC	4 cut(s)	145, 201, 590, 621
DdeI	CTNAG	3 cut(s)	9, 302, 642
DpnI	GATC	2 cut(s)	288, 683
DpnII	GATC	2 cut(s)	286, 681
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	2 cut(s)	330, 870
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	3 cut(s)	241, 379, 423
FaeI	CATG	4 cut(s)	374, 740, 754, 844
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	4 cut(s)	370, 736, 750, 840
FauI	CCCGC	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	747
Fnu4HI	GCNGC	4 cut(s)	193, 408, 411, 756
Fsp4HI	GCNGC	4 cut(s)	193, 408, 411, 756
FspBI	CTAG	3 cut(s)	290, 635, 837
GluI	GCNGC	4 cut(s)	193, 408, 411, 756
GsaI	CCCAGC	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	4 cut(s)	374, 740, 754, 844
HindIII	AAGCTT	3 cut(s)	487, 575, 890
HinfI	GANTC	2 cut(s)	5, 777
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	5 cut(s)	173, 336, 344, 676, 748
Hpy188I	TCNGA	6 cut(s)	10, 76, 124, 232, 310, 878
Hpy188III	TCNNGA	5 cut(s)	57, 65, 206, 284, 635
Hpy8I	GTNNAC	5 cut(s)	173, 336, 344, 676, 748
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	5 cut(s)	248, 269, 598, 741, 789
HpyCH4III	ACNGT	2 cut(s)	30, 673
HpyCH4V	TGCA	6 cut(s)	407, 437, 448, 508, 723, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	854
HpyF3I	CTNAG	3 cut(s)	9, 302, 642
Hsp92II	CATG	4 cut(s)	374, 740, 754, 844
Kzo9I	GATC	2 cut(s)	286, 681
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	3 cut(s)	397, 419, 742
LweI	GCATC	2 cut(s)	514, 628
MaeI	CTAG	3 cut(s)	290, 635, 837
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	2 cut(s)	288, 683
MboI	GATC	2 cut(s)	286, 681
MboII	GAAGA	3 cut(s)	77, 572, 858
MluCI	AATT	2 cut(s)	472, 537
MlyI	GAGTC	2 cut(s)	14, 786
MmeI	TCCRAC	2 cut(s)	249, 517
MnlI	CCTC	9 cut(s)	90, 93, 102, 108, 130, 145, 202, 433, 874
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	6 cut(s)	263, 294, 399, 612, 659, 900
MslI	CAYNNNNRTG	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	3 cut(s)	243, 381, 425
MvaI	CCWGG	3 cut(s)	243, 381, 425
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	854
NdeII	GATC	2 cut(s)	286, 681
NlaIII	CATG	4 cut(s)	374, 740, 754, 844
NlaIV	GGNNCC	2 cut(s)	156, 800
NspV	TTCGAA	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	423
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	4 cut(s)	194, 409, 412, 757
PleI	GAGTC	2 cut(s)	13, 785
PpsI	GAGTC	2 cut(s)	13, 785
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	3 cut(s)	241, 379, 423
PspFI	CCCAGC	1 cut(s)	499
PspGI	CCWGG	3 cut(s)	241, 379, 423
PspN4I	GGNNCC	2 cut(s)	156, 800
PspPI	GGNCC	2 cut(s)	190, 442
PspPPI	RGGWCCY	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	450
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	4 cut(s)	146, 202, 591, 622
RsaNI	GTAC	4 cut(s)	145, 201, 590, 621
RseI	CAYNNNNRTG	1 cut(s)	702
SaqAI	TTAA	6 cut(s)	263, 294, 399, 612, 659, 900
SatI	GCNGC	4 cut(s)	193, 408, 411, 756
Sau3AI	GATC	2 cut(s)	286, 681
Sau96I	GGNCC	2 cut(s)	190, 442
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	2 cut(s)	14, 786
ScrFI	CCNGG	3 cut(s)	243, 381, 425
SfaNI	GCATC	2 cut(s)	514, 628
SfcI	CTRYAG	1 cut(s)	446
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	3 cut(s)	185, 204, 398
SmoI	CTYRAG	3 cut(s)	185, 204, 398
Sse9I	AATT	2 cut(s)	472, 537
SsiI	CCGC	3 cut(s)	95, 193, 527
SspMI	CTAG	3 cut(s)	290, 635, 837
StyD4I	CCNGG	3 cut(s)	241, 379, 423
TaaI	ACNGT	2 cut(s)	30, 673
TaqI	TCGA	4 cut(s)	24, 108, 680, 793
TasI	AATT	2 cut(s)	472, 537
TatI	WGTACW	3 cut(s)	200, 589, 620
TauI	GCSGC	1 cut(s)	195
Tru1I	TTAA	6 cut(s)	263, 294, 399, 612, 659, 900
Tru9I	TTAA	6 cut(s)	263, 294, 399, 612, 659, 900
TscAI	CASTG	1 cut(s)	455
TseI	GCWGC	3 cut(s)	407, 410, 755
TspDTI	ATGAA	4 cut(s)	33, 267, 407, 720
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	455
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	2 cut(s)	472, 537
XbaI	TCTAGA	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	747
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	3 cut(s)	290, 635, 837
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.