Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Forward (+)

1309276 .. 1310308

Gene Structure 1033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACTGAGCTACAAGGAAGGAAAACTTGTAATTTGGGCCTGGGCTTGCATTACATTGATAAAATAAGAAAACCCAAAAACCTTGTAGCCAAGACATACAAAAACCCTCCAAAAGCTCAGAGGAGCAGAGAGCAGGCAGCAATGGAGTCTGAGAAACCAAGTTTCGAACCGTTTCGGCTGTTTTCGTCGCCAGGCTCGGGGTTTCTTGAACGATCAGAGCCCCCTCTTCCTCCGCCACCTCCTTCCGTCCAAGTGTTTCCCTCCGAGGTTTCGTCGTCTGTGAAGTACACCGTGGAGCCGGTGGAGTTGGGCGGACTTACTTTGCTCAAGGGCCGGGTTAGTACTCAAGACGTTTTCACACTATCCAACTCCGATTTAGTTCCTGGGAAATATGAAGGGGGATTAAAGCTGTGGGAAGGTTCTCTTTGTAGATCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

147

Amino Acids

16.09

Weight (kDa)

9.3

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	233, 312
AfaI	GTAC	2 cut(s)	287, 343
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	3 cut(s)	39, 190, 382
AluBI	AGCT	3 cut(s)	10, 116, 409
AluI	AGCT	3 cut(s)	10, 116, 409
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	2 cut(s)	37, 331
ApeKI	GCWGC	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	37, 331
AsuC2I	CCSGG	1 cut(s)	335
AsuII	TTCGAA	1 cut(s)	165
AvaI	CYCGRG	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	149
BciT130I	CCWGG	3 cut(s)	41, 192, 384
BcnI	CCSGG	1 cut(s)	335
BfaI	CTAG	1 cut(s)	439
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmcAI	AGTACT	1 cut(s)	343
Bme1390I	CCNGG	4 cut(s)	41, 192, 335, 384
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	37, 331
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	4 cut(s)	41, 192, 335, 384
Bpu14I	TTCGAA	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	311, 330
BpuMI	CCSGG	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	434
BsaJI	CCNNGG	4 cut(s)	40, 264, 291, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse118I	RCCGGY	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	3 cut(s)	41, 192, 384
BseCI	ATCGAT	1 cut(s)	434
BseDI	CCNNGG	4 cut(s)	40, 264, 291, 383
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	131, 141
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	2 cut(s)	39, 333
BshVI	ATCGAT	1 cut(s)	434
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	299, 334
BslI	CCNNNNNNNGG	1 cut(s)	197
BsnI	GGCC	2 cut(s)	39, 333
BsoBI	CYCGRG	1 cut(s)	196
Bsp119I	TTCGAA	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	212, 431, 435
BspACI	CCGC	2 cut(s)	233, 312
BspANI	GGCC	2 cut(s)	39, 333
BspCNI	CTCAG	2 cut(s)	130, 142
BspDI	ATCGAT	1 cut(s)	434
BspLI	GGNNCC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	4 cut(s)	40, 264, 291, 383
BssMI	GATC	3 cut(s)	212, 431, 435
Bst2UI	CCWGG	3 cut(s)	41, 192, 384
Bst4CI	ACNGT	2 cut(s)	171, 292
Bst6I	CTCTTC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	47, 135
BstDEI	CTNAG	3 cut(s)	6, 117, 150
BstDSI	CCRYGG	1 cut(s)	291
BstKTI	GATC	3 cut(s)	215, 434, 438
BstMBI	GATC	3 cut(s)	212, 431, 435
BstNI	CCWGG	3 cut(s)	41, 192, 384
BstSCI	CCNGG	4 cut(s)	39, 190, 333, 382
BstV1I	GCAGC	1 cut(s)	149
Bsu15I	ATCGAT	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	39, 333
BsuTUI	ATCGAT	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	47, 135
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	37, 331
ClaI	ATCGAT	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	286, 342
CviQI	GTAC	2 cut(s)	286, 342
DdeI	CTNAG	3 cut(s)	6, 117, 150
DpnI	GATC	3 cut(s)	214, 433, 437
DpnII	GATC	3 cut(s)	212, 431, 435
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	2 cut(s)	222, 327
Eco24I	GRGCYC	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	196
EcoRII	CCWGG	3 cut(s)	39, 190, 382
EcoT38I	GRGCYC	1 cut(s)	222
FaiI	YATR	2 cut(s)	97, 393
FalI	AAGNNNNNCTT	4 cut(s)	10, 42, 408, 440
Fnu4HI	GCNGC	1 cut(s)	138
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	439
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	39, 333
HapII	CCGG	2 cut(s)	299, 334
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	2 cut(s)	299, 334
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	5 cut(s)	120, 151, 217, 265, 373
Hpy188III	TCNNGA	2 cut(s)	206, 347
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	2 cut(s)	190, 277
HpyAV	CCTTC	4 cut(s)	12, 252, 389, 410
HpyCH4III	ACNGT	2 cut(s)	171, 292
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	1 cut(s)	49
HpyF3I	CTNAG	3 cut(s)	6, 117, 150
HpySE526I	ACGT	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	212, 431, 435
LmnI	GCTCC	2 cut(s)	123, 295
LpnPI	CCDG	9 cut(s)	26, 53, 119, 177, 204, 312, 347, 369, 396
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	439
MaeII	ACGT	1 cut(s)	351
MalI	GATC	3 cut(s)	214, 433, 437
MboI	GATC	3 cut(s)	212, 431, 435
MboII	GAAGA	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	7 cut(s)	114, 117, 234, 240, 249, 259, 271
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	1 cut(s)	404
MspI	CCGG	2 cut(s)	299, 334
MspR9I	CCNGG	4 cut(s)	41, 192, 335, 384
MvaI	CCWGG	3 cut(s)	41, 192, 384
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	3 cut(s)	212, 431, 435
NlaIV	GGNNCC	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp6I	CCWGG	3 cut(s)	39, 190, 382
PspGI	CCWGG	3 cut(s)	39, 190, 382
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	2 cut(s)	37, 331
RsaI	GTAC	2 cut(s)	287, 343
RsaNI	GTAC	2 cut(s)	286, 342
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	212, 431, 435
Sau96I	GGNCC	2 cut(s)	37, 331
ScaI	AGTACT	1 cut(s)	343
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	4 cut(s)	41, 192, 335, 384
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	8 cut(s)	12, 84, 118, 241, 270, 354, 411, 421
SfuI	TTCGAA	1 cut(s)	165
SmlI	CTYRAG	2 cut(s)	326, 345
SmoI	CTYRAG	2 cut(s)	326, 345
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	233, 312
SspMI	CTAG	1 cut(s)	439
StyD4I	CCNGG	4 cut(s)	39, 190, 333, 382
TaaI	ACNGT	2 cut(s)	171, 292
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	165, 434
TasI	AATT	1 cut(s)	31
TatI	WGTACW	2 cut(s)	285, 341
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	1 cut(s)	439
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.