Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Reverse (-)

44920806 .. 44924458

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG179500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGTCCGAGGTGAGAGCTAGCTTTTTCTTCCCTTGTATCGATTTCCAATCTGAAACTGAATCATATTTCCGCCTTTCTCAGAAACCAAGTTTCGAACCATTTCGGCTCTTCTCATCATCAGGGTCAGGATTATTTGACCAATCAGAGCCCCCTCTTCCTCCTCCACCTCCTTGCGTCGAAGTGCTTCCCTCTCAGATTTCGCAGTCTGTGAAGTACACTGTGGAGCCAGTAGAATTGGGTGGACTTACATTGCTCAAGGGCCGAGTTAGTACTCAAGATGTTTTTACACTGTCCAACTCCGATTTAGTTCCGGGGAAATATGAAGGGGGACTAAAGCTATGGGAGGGTTCACTTGATCTAGTAAAAGCTCTTAGCTCTGAAGTTCAAAATGGACATCTATCATTTGCCGGTAGACGAGTTTTAGAGCTTGGCTGTGGTCATGGACTTCCCGGTATCTTTGCCTGCCTTGAGGGTGCAGCTGCTATTCATTTCCAAGACTTCAATGCTGAGGTCCTGCAATGTCTCACAATACCCAATGTAAATGCAAATGTTCCAAGCTTCCAACCCCCAGCATTGCAAGAGACAACGTGTGATAAGGGGGCGGAAATTCGTTTTTTTGCTGGGGACTGGCGTGAAGTCCATAACCATCTTCCCTATGCACAAAACACTGAGAAGGATGTTAATGTTAGTTCAGGGAAAAACCCGGATGCTCAATATGATATTATTTTAATGGCAGAGACAGTTTACTCAATCTCCACTCTCCAGCATCTCTATGAACTCATAAAGAAGGTATTATCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

268

Amino Acids

29.49

Weight (kDa)

4.86

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	2 cut(s)	73, 605
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	2 cut(s)	218, 274
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	389, 505
AluBI	AGCT	8 cut(s)	20, 24, 340, 371, 378, 430, 482, 561
AluI	AGCT	8 cut(s)	20, 24, 340, 371, 378, 430, 482, 561
Alw26I	GTCTC	3 cut(s)	530, 578, 734
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	2 cut(s)	479, 482
ApoI	RAATTY	1 cut(s)	609
Asp700I	GAANNNNTTC	2 cut(s)	102, 186
AspS9I	GGNCC	2 cut(s)	262, 514
AsuC2I	CCSGG	3 cut(s)	315, 453, 707
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	96
AsuNHI	GCTAGC	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	469, 491
BccI	CCATC	1 cut(s)	657
BcnI	CCSGG	3 cut(s)	315, 453, 707
BcoDI	GTCTC	3 cut(s)	530, 578, 734
BfaI	CTAG	2 cut(s)	21, 362
BisI	GCNGC	2 cut(s)	480, 483
BlsI	GCNGC	2 cut(s)	481, 484
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	3 cut(s)	315, 453, 707
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	2 cut(s)	262, 514
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	3 cut(s)	315, 453, 707
BmsI	GCATC	2 cut(s)	700, 778
BmtI	GCTAGC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	749
Bpu10I	CCTNAGC	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	3 cut(s)	242, 261, 491
BpuMI	CCSGG	3 cut(s)	315, 453, 707
Bsa29I	ATCGAT	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	9, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	230, 635
Bse3DI	GCAATG	3 cut(s)	251, 527, 575
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	9, 314
BseGI	GGATG	2 cut(s)	685, 715
BseMI	GCAATG	3 cut(s)	251, 527, 575
BseMII	CTCAG	4 cut(s)	95, 209, 501, 663
BseNI	ACTGG	2 cut(s)	230, 635
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	469, 491
BseYI	CCCAGC	2 cut(s)	571, 623
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	264
BshVI	ATCGAT	1 cut(s)	42
BsiSI	CCGG	4 cut(s)	314, 411, 453, 707
BslFI	GGGAC	2 cut(s)	345, 641
BsmAI	GTCTC	3 cut(s)	530, 578, 734
BsmFI	GGGAC	2 cut(s)	345, 641
BsnI	GGCC	1 cut(s)	264
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	2 cut(s)	73, 605
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	4 cut(s)	94, 208, 502, 664
BspDI	ATCGAT	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	228
BspOI	GCTAGC	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	96
BsrDI	GCAATG	3 cut(s)	251, 527, 575
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	230, 635
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	9, 314
BssMI	GATC	1 cut(s)	358
Bst4CI	ACNGT	3 cut(s)	223, 294, 745
Bst6I	CTCTTC	2 cut(s)	116, 162
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	22, 466
BstDEI	CTNAG	5 cut(s)	81, 195, 374, 510, 672
BstF5I	GGATG	2 cut(s)	685, 715
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	3 cut(s)	530, 578, 734
BstMBI	GATC	1 cut(s)	358
BstSCI	CCNGG	3 cut(s)	313, 451, 705
BstV1I	GCAGC	2 cut(s)	469, 491
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	685, 715
BtsIMutI	CAGTG	3 cut(s)	219, 290, 669
Cac8I	GCNNGC	2 cut(s)	22, 466
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	262, 514
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	217, 273
CviAII	CATG	1 cut(s)	443
CviQI	GTAC	2 cut(s)	217, 273
DdeI	CTNAG	5 cut(s)	81, 195, 374, 510, 672
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eam1104I	CTCTTC	2 cut(s)	116, 162
EarI	CTCTTC	2 cut(s)	116, 162
EciI	GGCGGA	2 cut(s)	62, 620
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	1 cut(s)	446
FaqI	GGGAC	2 cut(s)	345, 641
FatI	CATG	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	480, 483
FokI	GGATG	2 cut(s)	692, 722
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	480, 483
FspBI	CTAG	2 cut(s)	21, 362
GluI	GCNGC	2 cut(s)	480, 483
GsaI	CCCAGC	2 cut(s)	575, 627
GsuI	CTGGAG	1 cut(s)	749
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	4 cut(s)	314, 411, 453, 707
HgaI	GACGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	2 cut(s)	5, 62
HpaII	CCGG	4 cut(s)	314, 411, 453, 707
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	5 cut(s)	219, 245, 353, 416, 748
Hpy188I	TCNGA	7 cut(s)	10, 55, 84, 148, 198, 304, 382
Hpy188III	TCNNGA	2 cut(s)	129, 278
Hpy8I	GTNNAC	5 cut(s)	219, 245, 353, 416, 748
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	3 cut(s)	320, 670, 784
HpyCH4III	ACNGT	3 cut(s)	223, 294, 745
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	5 cut(s)	479, 520, 548, 580, 662
HpyF3I	CTNAG	5 cut(s)	81, 195, 374, 510, 672
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	1 cut(s)	446
Kzo9I	GATC	1 cut(s)	358
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	2 cut(s)	469, 491
LweI	GCATC	2 cut(s)	700, 778
MaeI	CTAG	2 cut(s)	21, 362
MaeII	ACGT	1 cut(s)	590
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	4 cut(s)	22, 103, 149, 644
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	2 cut(s)	236, 609
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	321, 589
MnlI	CCTC	9 cut(s)	4, 165, 171, 174, 180, 202, 340, 466, 505
MroXI	GAANNNNTTC	2 cut(s)	102, 186
MseI	TTAA	2 cut(s)	684, 731
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	4 cut(s)	314, 411, 453, 707
MspR9I	CCNGG	3 cut(s)	315, 453, 707
NciI	CCSGG	3 cut(s)	315, 453, 707
NdeII	GATC	1 cut(s)	358
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	1 cut(s)	228
NmeAIII	GCCGAG	1 cut(s)	290
NspV	TTCGAA	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	2 cut(s)	102, 186
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	481, 484
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	514
PspFI	CCCAGC	2 cut(s)	571, 623
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	262, 514
PspPPI	RGGWCCY	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	218, 274
RsaNI	GTAC	2 cut(s)	217, 273
RseI	CAYNNNNRTG	1 cut(s)	774
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	684, 731
SatI	GCNGC	2 cut(s)	480, 483
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	2 cut(s)	262, 514
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	315, 453, 707
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	2 cut(s)	700, 778
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	3 cut(s)	257, 276, 470
SmoI	CTYRAG	3 cut(s)	257, 276, 470
Sse9I	AATT	2 cut(s)	236, 609
SsiI	CCGC	2 cut(s)	73, 605
SspMI	CTAG	2 cut(s)	21, 362
StyD4I	CCNGG	3 cut(s)	313, 451, 705
TaaI	ACNGT	3 cut(s)	223, 294, 745
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	3 cut(s)	42, 96, 180
TasI	AATT	2 cut(s)	236, 609
TatI	WGTACW	2 cut(s)	216, 272
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	684, 731
Tru9I	TTAA	2 cut(s)	684, 731
TscAI	CASTG	3 cut(s)	226, 297, 676
TseI	GCWGC	2 cut(s)	479, 482
TspDTI	ATGAA	3 cut(s)	339, 479, 792
TspRI	CASTG	3 cut(s)	226, 297, 676
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	415
XmnI	GAANNNNTTC	2 cut(s)	102, 186
XspI	CTAG	2 cut(s)	21, 362
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.