Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Forward (+)

2081094 .. 2084261

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1018000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGTCTGAGAAACCAAGTTTCGAACCGTTTCGGCTGTTTTCATCGCCAGGGTCGGGGTTTCTTGAACAATCAGAGCCCCCTCTTCCTCCGCCGCCTCCTTCCGTCCAAGTGCTTCCCTCCGAGGTTTCGTCGTCTGTGAAGTACACCGTGGAGCCGGTGGAGTTGGGCGGACTTACTTTGCTCAAGGGTCGCGTTAGTACTCAAGACGTTTTCACGCTGTCCAACTCTGATTTAGTTCCTGGGAAATATGAAGGGGGATTAAAGCTGTGGGAAGGTTCTCTTGATCTAGTTAAAGCTCTAAGCTCTGAAGTTCAAAATGGAAATTTATCATTTGCCGGTAAATGCGTTTTAGAGCTTGGTTGTGGCCATGGACTTCCCGGTATCTTTGCCTGCCTTGAGGGTGCAGCTGCCATTCATTTCCAGGACTTCAATGCGGAGGTCCTGCGGTGCCTCACCATTCCTAATGTAAATTCAAACATTCCAAACTTCCAATCCCCATCAGTGCAAGCGACAAAGTCTAATGTGGGGGCCGAAATTGGTTTTTTTGCTGGTGACTGGCGTGAAATGCATAAGCTTCTTCCTTATGCACAAAACGACGAGAGGGATGTTAATGTTAGTTCAGAGCAAAGTTTAGATGCTCAGTATGATATTATTTTAATGGCGGAGACAGTTTACTCAATTTCTACTCTCCCACATCTATATGAACTCATAAAAAAGTGCTTAACTCCTTCTCATGGAGTAGTCTACATGGCTGCAAAGAAGCATTATTTTGGAGTAGGTGGGGGAACTCGAAGGTTTCTATCTGTGGTCGAGAAAGATGGGGTGTTGGCTTCTTGCATGGTTGCTGAAGTTGCAGATGGTTCTTCTAATGTCCGAGAGGTATGGAAGCTTTCGTTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

302

Amino Acids

32.59

Weight (kDa)

5.14

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	450
AccI	GTMKAC	1 cut(s)	747
AccII	CGCG	1 cut(s)	195
AciI	CCGC	6 cut(s)	92, 95, 171, 437, 448, 665
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	325, 472
AcuI	CTGAAG	2 cut(s)	330, 870
AfaI	GTAC	2 cut(s)	146, 202
AfiI	CCNNNNNNNGG	2 cut(s)	56, 737
AgsI	TTSAA	4 cut(s)	68, 317, 433, 477
AjnI	CCWGG	3 cut(s)	49, 241, 423
AluBI	AGCT	7 cut(s)	268, 299, 306, 358, 410, 577, 892
AluI	AGCT	7 cut(s)	268, 299, 306, 358, 410, 577, 892
Alw26I	GTCTC	1 cut(s)	662
AoxI	GGCC	2 cut(s)	367, 531
ApeKI	GCWGC	3 cut(s)	407, 410, 755
ApoI	RAATTY	2 cut(s)	325, 472
Asp700I	GAANNNNTTC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	442, 531
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	448, 566
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	442
BalI	TGGCCA	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	397, 419, 742
BccI	CCATC	3 cut(s)	508, 815, 854
BciT130I	CCWGG	3 cut(s)	51, 243, 425
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	4 cut(s)	95, 408, 411, 756
BlsI	GCNGC	4 cut(s)	96, 409, 412, 757
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	4 cut(s)	51, 243, 381, 425
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	442, 531
BmiI	GGNNCC	3 cut(s)	156, 452, 532
BmrFI	CCNGG	4 cut(s)	51, 243, 381, 425
BmsI	GCATC	1 cut(s)	628
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	3 cut(s)	170, 189, 419
BpuMI	CCSGG	1 cut(s)	381
BsaJI	CCNNGG	5 cut(s)	50, 123, 150, 242, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 737
Bse118I	RCCGGY	2 cut(s)	157, 338
Bse1I	ACTGG	1 cut(s)	563
BseBI	CCWGG	3 cut(s)	51, 243, 425
BseDI	CCNNGG	5 cut(s)	50, 123, 150, 242, 370
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	2 cut(s)	56, 737
BseMII	CTCAG	1 cut(s)	656
BseNI	ACTGG	1 cut(s)	563
BseXI	GCAGC	3 cut(s)	397, 419, 742
BsgI	GTGCAG	1 cut(s)	426
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	369, 533
BshNI	GGYRCC	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	158, 339, 381
BslI	CCNNNNNNNGG	2 cut(s)	56, 737
BsmAI	GTCTC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	369, 533
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	6 cut(s)	92, 95, 171, 437, 448, 665
BspANI	GGCC	2 cut(s)	369, 533
BspCNI	CTCAG	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	3 cut(s)	156, 452, 532
BspT104I	TTCGAA	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	450
BsrFI	RCCGGY	2 cut(s)	157, 338
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	2 cut(s)	157, 338
BssECI	CCNNGG	5 cut(s)	50, 123, 150, 242, 370
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	3 cut(s)	51, 243, 425
Bst4CI	ACNGT	3 cut(s)	30, 151, 673
Bst6I	CTCTTC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	394, 510
BstDEI	CTNAG	3 cut(s)	9, 302, 642
BstDSI	CCRYGG	2 cut(s)	150, 370
BstF5I	GGATG	1 cut(s)	613
BstFNI	CGCG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	568, 854
BstNI	CCWGG	3 cut(s)	51, 243, 425
BstSCI	CCNGG	4 cut(s)	49, 241, 379, 423
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	397, 419, 742
BsuRI	GGCC	2 cut(s)	369, 533
BtgI	CCRYGG	2 cut(s)	150, 370
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	613
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	2 cut(s)	394, 510
Cfr10I	RCCGGY	2 cut(s)	157, 338
Cfr13I	GGNCC	2 cut(s)	442, 531
Csp6I	GTAC	2 cut(s)	145, 201
CviAII	CATG	4 cut(s)	371, 737, 751, 841
CviQI	GTAC	2 cut(s)	145, 201
DdeI	CTNAG	3 cut(s)	9, 302, 642
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	3 cut(s)	81, 186, 680
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	2 cut(s)	330, 870
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	3 cut(s)	49, 241, 423
EcoT14I	CCWWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	4 cut(s)	374, 740, 754, 844
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	4 cut(s)	370, 736, 750, 840
FblI	GTMKAC	1 cut(s)	747
Fnu4HI	GCNGC	4 cut(s)	95, 408, 411, 756
FokI	GGATG	1 cut(s)	620
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	95, 408, 411, 756
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	4 cut(s)	95, 408, 411, 756
HaeIII	GGCC	2 cut(s)	369, 533
HapII	CCGG	3 cut(s)	158, 339, 381
Hin1II	CATG	4 cut(s)	374, 740, 754, 844
HindIII	AAGCTT	2 cut(s)	575, 890
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	3 cut(s)	158, 339, 381
HphI	GGTGA	2 cut(s)	448, 566
Hpy166II	GTNNAC	3 cut(s)	147, 676, 748
Hpy188I	TCNGA	7 cut(s)	10, 76, 124, 232, 310, 625, 878
Hpy188III	TCNNGA	4 cut(s)	65, 206, 284, 814
Hpy8I	GTNNAC	3 cut(s)	147, 676, 748
Hpy99I	CGWCG	2 cut(s)	136, 602
HpyAV	CCTTC	5 cut(s)	111, 248, 269, 741, 789
HpyCH4III	ACNGT	3 cut(s)	30, 151, 673
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	7 cut(s)	407, 508, 571, 590, 758, 840, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	568, 854
HpyF3I	CTNAG	3 cut(s)	9, 302, 642
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	374, 740, 754, 844
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	3 cut(s)	397, 419, 742
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	77, 572, 858
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	4 cut(s)	325, 472, 537, 681
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	369
Mph1103I	ATGCAT	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	6 cut(s)	263, 294, 612, 659, 725, 900
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	3 cut(s)	158, 339, 381
MspR9I	CCNGG	4 cut(s)	51, 243, 381, 425
MvaI	CCWGG	3 cut(s)	51, 243, 425
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	568, 854
NciI	CCSGG	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	4 cut(s)	374, 740, 754, 844
NlaIV	GGNNCC	3 cut(s)	156, 452, 532
NmuCI	GTSAC	1 cut(s)	554
NsiI	ATGCAT	1 cut(s)	573
NspV	TTCGAA	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	30
PflFI	GACNNNGTC	1 cut(s)	517
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	4 cut(s)	96, 409, 412, 757
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	3 cut(s)	49, 241, 423
PspGI	CCWGG	3 cut(s)	49, 241, 423
PspN4I	GGNNCC	3 cut(s)	156, 452, 532
PspPI	GGNCC	2 cut(s)	442, 531
PspPPI	RGGWCCY	1 cut(s)	442
PsyI	GACNNNGTC	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	146, 202
RsaNI	GTAC	2 cut(s)	145, 201
RseI	CAYNNNNRTG	1 cut(s)	702
SaqAI	TTAA	6 cut(s)	263, 294, 612, 659, 725, 900
SatI	GCNGC	4 cut(s)	95, 408, 411, 756
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	442, 531
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	51, 243, 381, 425
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	628
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	3 cut(s)	185, 204, 398
SmoI	CTYRAG	3 cut(s)	185, 204, 398
Sse9I	AATT	4 cut(s)	325, 472, 537, 681
SsiI	CCGC	6 cut(s)	92, 95, 171, 437, 448, 665
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	4 cut(s)	49, 241, 379, 423
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	3 cut(s)	30, 151, 673
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	24, 793, 813
TasI	AATT	4 cut(s)	325, 472, 537, 681
TatI	WGTACW	2 cut(s)	144, 200
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	6 cut(s)	263, 294, 612, 659, 725, 900
Tru9I	TTAA	6 cut(s)	263, 294, 612, 659, 725, 900
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	3 cut(s)	407, 410, 755
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	4 cut(s)	33, 267, 407, 720
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	510
Tth111I	GACNNNGTC	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	2 cut(s)	325, 472
XmiI	GTMKAC	1 cut(s)	747
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.