Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037927.1

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 865

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037927.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

atgcccaaaacaatgacaggacaagccactgctgttgtggcaatggaggaaacatttgttactctggggggtttaaacatattgaaagcccaaaatattggtaacccaaaccgaaacaaggaaaaacccccccaaaaccctgtcagcagagagcagacagcaatggagtccgaggtgagagagctagctttcttcccttataccgatttccaatctgaaactgaatacgatttctgcgtttcccagaaaccaagtttcgaaccatttcggctcttctcctcatcagggtcaggattatttgaccaatcagagccccctgttcctcctccacctccttgcgtcgaagtgcttccctctcagatttcgcagtctgtgaagtacactgtggagccagtagaattgggtggacttacattgctcaagggccgagttagtactcaagatgtttttaagctgtccaactccgatttagttccggggaaatatgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

163

Amino Acids

17.95

Weight (kDa)

4.78

Isoelectric Point (pI)

63.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	380, 436
AfiI	CCNNNNNNNGG	2 cut(s)	118, 285
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	3 cut(s)	184, 188, 454
AluI	AGCT	3 cut(s)	184, 188, 454
AoxI	GGCC	1 cut(s)	424
Asp700I	GAANNNNTTC	2 cut(s)	264, 348
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	187
AsuII	TTCGAA	1 cut(s)	258
AsuNHI	GCTAGC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	477
BfaI	CTAG	1 cut(s)	185
BmcAI	AGTACT	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	477
BmtI	GCTAGC	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	258
BpuEI	CTTGAG	2 cut(s)	404, 423
BpuMI	CCSGG	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	171, 476
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 285
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	3 cut(s)	48, 168, 413
BseDI	CCNNGG	2 cut(s)	171, 476
BseLI	CCNNNNNNNGG	2 cut(s)	118, 285
BseMI	GCAATG	3 cut(s)	48, 168, 413
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	2 cut(s)	268, 315
BshFI	GGCC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	118, 285
BsnI	GGCC	1 cut(s)	426
Bsp119I	TTCGAA	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	315
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	390
BspOI	GCTAGC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	278
BspT104I	TTCGAA	1 cut(s)	258
BsrDI	GCAATG	3 cut(s)	48, 168, 413
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	2 cut(s)	171, 476
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	357
BstEII	GGTNACC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	426
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 381
Cac8I	GCNNGC	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	424
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	379, 435
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviJI	RGCY	9 cut(s)	26, 89, 184, 188, 271, 313, 391, 426, 454
CviKI_1	RGCY	9 cut(s)	26, 89, 184, 188, 271, 313, 391, 426, 454
CviQI	GTAC	2 cut(s)	379, 435
DdeI	CTNAG	1 cut(s)	357
DraI	TTTAAA	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	315
FaiI	YATR	3 cut(s)	80, 201, 486
FriOI	GRGCYC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	1 cut(s)	476
HgaI	GACGC	1 cut(s)	328
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	381, 407
Hpy188I	TCNGA	5 cut(s)	172, 217, 310, 360, 466
Hpy188III	TCNNGA	2 cut(s)	291, 440
Hpy8I	GTNNAC	2 cut(s)	381, 407
Hpy99I	CGWCG	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	357
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	8 cut(s)	3, 50, 153, 257, 270, 276, 330, 405
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	58, 101
MboII	GAAGA	2 cut(s)	184, 265
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	7 cut(s)	40, 166, 289, 333, 336, 342, 364
MroXI	GAANNNNTTC	2 cut(s)	264, 348
MseI	TTAA	2 cut(s)	74, 450
MspI	CCGG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	477
MssI	GTTTAAAC	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	477
NheI	GCTAGC	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	390
NmeAIII	GCCGAG	1 cut(s)	452
NspV	TTCGAA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdmI	GAANNNNTTC	2 cut(s)	264, 348
PleI	GAGTC	1 cut(s)	175
PmeI	GTTTAAAC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	424
RsaI	GTAC	2 cut(s)	380, 436
RsaNI	GTAC	2 cut(s)	379, 435
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	74, 450
Sau96I	GGNCC	1 cut(s)	424
ScaI	AGTACT	1 cut(s)	436
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	5 cut(s)	177, 186, 190, 334, 456
SfuI	TTCGAA	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	419, 438
SmoI	CTYRAG	2 cut(s)	419, 438
Sse9I	AATT	1 cut(s)	398
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	258, 342
TasI	AATT	1 cut(s)	398
TatI	WGTACW	2 cut(s)	378, 434
Tru1I	TTAA	2 cut(s)	74, 450
Tru9I	TTAA	2 cut(s)	74, 450
TscAI	CASTG	2 cut(s)	34, 388
TspRI	CASTG	2 cut(s)	34, 388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmnI	GAANNNNTTC	2 cut(s)	264, 348
XspI	CTAG	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.