Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Reverse (-)

36856350 .. 36859750

Gene Structure 3401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAGTCCGAGAAACCAACTTTCGAACCATTTCGGCTCTTCTCATCATCAGGGTCAGGATTATTTGACGAACCAGAGCCCCCACTTCCTCCTCCACCCCCTTGCGTCGAAGTGCTTCCCTCTCAGATTTCGCAGTCTGTGAAGTACACTGTGGAGCCAGTAGAATTGGGTGGACTTACATTGCTCAAGGGCCGAGTTAGTACTCAAGATGTTTTTACACTGTCCAACTCCGATTTAGTTCCGGGGAAATATGAAGGGGGACTAAAGCTATGGGAAGGTTCACTTGATCTAGTAAAAGCTCTTAGCTCTGAAGTTCAAAATGGACATCTATCATTTGCCGGTAAACGAGTTTTAGAGGTGGGCATCCTGATAAATTCAGCTTGGCTGTGGTCATGGACTTCCCGGTATCTTTGCCTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

140

Amino Acids

15.33

Weight (kDa)

4.84

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	2 cut(s)	146, 202
AgsI	TTSAA	1 cut(s)	317
AluBI	AGCT	4 cut(s)	268, 299, 306, 380
AluI	AGCT	4 cut(s)	268, 299, 306, 380
AoxI	GGCC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	373
Asp700I	GAANNNNTTC	2 cut(s)	30, 114
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	2 cut(s)	243, 403
AsuII	TTCGAA	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	81
BcnI	CCSGG	2 cut(s)	243, 403
BfaI	CTAG	1 cut(s)	290
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	243, 403
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	243, 403
BmsI	GCATC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	170, 189
BpuMI	CCSGG	2 cut(s)	243, 403
BsaJI	CCNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	242, 339, 403
BslFI	GGGAC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	151, 222
Bst6I	CTCTTC	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	123, 302
BstF5I	GGATG	1 cut(s)	363
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	241, 401
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	147, 218
Cac8I	GCNNGC	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	145, 201
CviAII	CATG	1 cut(s)	393
CviJI	RGCY	9 cut(s)	37, 79, 157, 192, 268, 299, 306, 380, 385
CviKI_1	RGCY	9 cut(s)	37, 79, 157, 192, 268, 299, 306, 380, 385
CviQI	GTAC	2 cut(s)	145, 201
DdeI	CTNAG	2 cut(s)	123, 302
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	1 cut(s)	396
FaiI	YATR	3 cut(s)	252, 271, 394
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	1 cut(s)	392
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	3 cut(s)	242, 339, 403
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	396
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	3 cut(s)	242, 339, 403
Hpy166II	GTNNAC	4 cut(s)	147, 173, 281, 344
Hpy188I	TCNGA	4 cut(s)	10, 126, 232, 310
Hpy188III	TCNNGA	3 cut(s)	57, 206, 367
Hpy8I	GTNNAC	4 cut(s)	147, 173, 281, 344
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	248, 269
HpyCH4III	ACNGT	2 cut(s)	151, 222
HpyF3I	CTNAG	2 cut(s)	123, 302
Hsp92II	CATG	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	8 cut(s)	36, 42, 87, 171, 255, 352, 380, 416
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	1 cut(s)	290
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	2 cut(s)	164, 373
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	4 cut(s)	99, 102, 130, 349
MroXI	GAANNNNTTC	2 cut(s)	30, 114
MspI	CCGG	3 cut(s)	242, 339, 403
MspR9I	CCNGG	2 cut(s)	243, 403
NciI	CCSGG	2 cut(s)	243, 403
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	396
NlaIV	GGNNCC	1 cut(s)	156
NmeAIII	GCCGAG	1 cut(s)	218
NspV	TTCGAA	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	44
PdmI	GAANNNNTTC	2 cut(s)	30, 114
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	190
RsaI	GTAC	2 cut(s)	146, 202
RsaNI	GTAC	2 cut(s)	145, 201
SapI	GCTCTTC	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	190
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	243, 403
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	6 cut(s)	270, 280, 301, 308, 360, 382
SfaNI	GCATC	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	185, 204
SmoI	CTYRAG	2 cut(s)	185, 204
Sse9I	AATT	2 cut(s)	164, 373
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	241, 401
TaaI	ACNGT	2 cut(s)	151, 222
TaqI	TCGA	2 cut(s)	24, 108
TasI	AATT	2 cut(s)	164, 373
TatI	WGTACW	2 cut(s)	144, 200
TscAI	CASTG	2 cut(s)	154, 225
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	154, 225
XapI	RAATTY	1 cut(s)	373
XmnI	GAANNNNTTC	2 cut(s)	30, 114
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.