Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000597.1

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Forward (+)

45142 .. 47729

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000597.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atgcccaaaacaatgacaggacaagccactgctgttgtggcaatggaggaaacatttgttactctgggccggggtttaaacatattgaaagcccaaaatattggtaacccaaaccgaaacaaggaaaaacccccccaaaaccctgtcagcagagagcagacagcaatggagtccgaggtgagagagctagctttcttcccttataccgatttccaatctgaaactgaatacgatttctgcgtttcccagaaaccaagtttcgaaccatttcggctcttctcctcatcagggtcaggattatttgaccaatcagagccccctgttcctcctccacctccttgcgtcgaagtgcttccctctcagatttcgcagtctgtgaagtacactgtggagccagtagaattgggtggacttacattgctcaagggccgagttagtactcaagatgtttttaagctgtccaactccgatttagttccggggaaatatgaagataggtggggactaaagctatgggaaggttcacttgatctagtaaaagctcttagctctgaagttcaaaatggacatctatcatttgccggtaaacgagttttagaggtgggcatcctgataacttcagctgctattcatttccaagacttcaatgctgaggtcctgcaatgtctcacaatacccaatgtaaatgcaaatgttccaagcttccaacccccagcattgcaagagacaaagtgtgataaggggacggaaattcgtttttttgctggggactggcgtgaagtccataaccatcttccctatgcacaaaacactgagaaggatgttaatgttagttcagggaaaaacccagatgctcaatatgatataattttaatggcagagacagtttactcaatctccactctccagcatctctatgaactcataaagaaggtattatctatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

315

Amino Acids

35.0

Weight (kDa)

5.11

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	750
AcuI	CTGAAG	2 cut(s)	573, 603
AfaI	GTAC	2 cut(s)	383, 439
AfiI	CCNNNNNNNGG	2 cut(s)	121, 288
AgsI	TTSAA	3 cut(s)	88, 560, 646
AluBI	AGCT	8 cut(s)	187, 191, 457, 511, 542, 549, 623, 702
AluI	AGCT	8 cut(s)	187, 191, 457, 511, 542, 549, 623, 702
Alw26I	GTCTC	3 cut(s)	671, 719, 875
AoxI	GGCC	2 cut(s)	67, 427
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	1 cut(s)	750
Asp700I	GAANNNNTTC	2 cut(s)	267, 351
AspS9I	GGNCC	3 cut(s)	67, 427, 655
AsuC2I	CCSGG	2 cut(s)	71, 480
AsuHPI	GGTGA	1 cut(s)	190
AsuII	TTCGAA	1 cut(s)	261
AsuNHI	GCTAGC	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	1 cut(s)	798
BcnI	CCSGG	2 cut(s)	71, 480
BcoDI	GTCTC	3 cut(s)	671, 719, 875
BfaI	CTAG	2 cut(s)	188, 533
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	71, 480
Bme18I	GGWCC	1 cut(s)	655
BmgT120I	GGNCC	3 cut(s)	67, 427, 655
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	71, 480
BmsI	GCATC	3 cut(s)	615, 841, 919
BmtI	GCTAGC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	890
Bpu10I	CCTNAGC	1 cut(s)	651
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	407, 426
BpuMI	CCSGG	2 cut(s)	71, 480
BsaJI	CCNNGG	3 cut(s)	70, 174, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	881, 911
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 288
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	2 cut(s)	395, 776
Bse3DI	GCAATG	5 cut(s)	48, 171, 416, 668, 716
BseDI	CCNNGG	3 cut(s)	70, 174, 479
BseGI	GGATG	2 cut(s)	606, 826
BseLI	CCNNNNNNNGG	2 cut(s)	121, 288
BseMI	GCAATG	5 cut(s)	48, 171, 416, 668, 716
BseMII	CTCAG	3 cut(s)	374, 642, 804
BseNI	ACTGG	2 cut(s)	395, 776
BseRI	GAGGAG	2 cut(s)	271, 318
BseXI	GCAGC	1 cut(s)	610
BseYI	CCCAGC	2 cut(s)	712, 764
BshFI	GGCC	2 cut(s)	69, 429
BsiSI	CCGG	3 cut(s)	70, 479, 582
BslFI	GGGAC	3 cut(s)	516, 757, 782
BslI	CCNNNNNNNGG	2 cut(s)	121, 288
BsmAI	GTCTC	3 cut(s)	671, 719, 875
BsmFI	GGGAC	3 cut(s)	516, 757, 782
BsnI	GGCC	2 cut(s)	69, 429
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	529
BspANI	GGCC	2 cut(s)	69, 429
BspCNI	CTCAG	3 cut(s)	373, 643, 805
BspLI	GGNNCC	1 cut(s)	393
BspOI	GCTAGC	1 cut(s)	191
BspQI	GCTCTTC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	261
BsrDI	GCAATG	5 cut(s)	48, 171, 416, 668, 716
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	395, 776
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	3 cut(s)	70, 174, 479
BssMI	GATC	1 cut(s)	529
Bst4CI	ACNGT	2 cut(s)	388, 886
Bst6I	CTCTTC	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	4 cut(s)	360, 545, 651, 813
BstEII	GGTNACC	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	606, 826
BstKTI	GATC	1 cut(s)	532
BstMAI	GTCTC	3 cut(s)	671, 719, 875
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	69, 478
BstV1I	GCAGC	1 cut(s)	610
BstXI	CCANNNNNNTGG	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	69, 429
BtsCI	GGATG	2 cut(s)	606, 826
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 384, 810
Cac8I	GCNNGC	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	3 cut(s)	67, 427, 655
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	382, 438
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviQI	GTAC	2 cut(s)	382, 438
DdeI	CTNAG	4 cut(s)	360, 545, 651, 813
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
DraI	TTTAAA	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	655
Eco57I	CTGAAG	2 cut(s)	573, 603
Eco91I	GGTNACC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	655
EcoO65I	GGTNACC	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	318
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	3 cut(s)	516, 757, 782
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	2 cut(s)	593, 833
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	2 cut(s)	188, 533
GluI	GCNGC	1 cut(s)	624
GsaI	CCCAGC	2 cut(s)	716, 768
GsuI	CTGGAG	1 cut(s)	890
HaeIII	GGCC	2 cut(s)	69, 429
HapII	CCGG	3 cut(s)	70, 479, 582
HgaI	GACGC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	3 cut(s)	70, 479, 582
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	5 cut(s)	384, 410, 524, 587, 889
Hpy188I	TCNGA	6 cut(s)	175, 220, 313, 363, 469, 553
Hpy188III	TCNNGA	3 cut(s)	294, 443, 610
Hpy8I	GTNNAC	5 cut(s)	384, 410, 524, 587, 889
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	512, 811, 925
HpyCH4III	ACNGT	2 cut(s)	388, 886
HpyCH4V	TGCA	4 cut(s)	661, 689, 721, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	4 cut(s)	360, 545, 651, 813
Kzo9I	GATC	1 cut(s)	529
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	3 cut(s)	615, 841, 919
MaeI	CTAG	2 cut(s)	188, 533
MaeIII	GTNAC	2 cut(s)	58, 104
MalI	GATC	1 cut(s)	531
MboI	GATC	1 cut(s)	529
MboII	GAAGA	4 cut(s)	187, 268, 503, 785
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	3 cut(s)	401, 750, 867
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	486, 730
MnlI	CCTC	9 cut(s)	40, 169, 292, 336, 339, 345, 367, 592, 646
MroXI	GAANNNNTTC	2 cut(s)	267, 351
MseI	TTAA	4 cut(s)	77, 453, 825, 872
MslI	CAYNNNNRTG	1 cut(s)	915
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	3 cut(s)	70, 479, 582
MspR9I	CCNGG	2 cut(s)	71, 480
MssI	GTTTAAAC	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	2 cut(s)	71, 480
NdeII	GATC	1 cut(s)	529
NheI	GCTAGC	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	393
NmeAIII	GCCGAG	1 cut(s)	455
NspV	TTCGAA	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	267, 351
PkrI	GCNGC	1 cut(s)	625
PleI	GAGTC	1 cut(s)	178
PmeI	GTTTAAAC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	655
Psp5II	RGGWCCY	1 cut(s)	655
PspEI	GGTNACC	1 cut(s)	104
PspFI	CCCAGC	2 cut(s)	712, 764
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	3 cut(s)	67, 427, 655
PspPPI	RGGWCCY	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	383, 439
RsaNI	GTAC	2 cut(s)	382, 438
RseI	CAYNNNNRTG	1 cut(s)	915
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	4 cut(s)	77, 453, 825, 872
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	1 cut(s)	529
Sau96I	GGNCC	3 cut(s)	67, 427, 655
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	71, 480
SduI	GDGCHC	1 cut(s)	318
SfaNI	GCATC	3 cut(s)	615, 841, 919
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	1 cut(s)	655
SmiMI	CAYNNNNRTG	1 cut(s)	915
SmlI	CTYRAG	2 cut(s)	422, 441
SmoI	CTYRAG	2 cut(s)	422, 441
Sse9I	AATT	3 cut(s)	401, 750, 867
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	2 cut(s)	188, 533
StyD4I	CCNGG	2 cut(s)	69, 478
TaaI	ACNGT	2 cut(s)	388, 886
TaqI	TCGA	2 cut(s)	261, 345
TasI	AATT	3 cut(s)	401, 750, 867
TatI	WGTACW	2 cut(s)	381, 437
Tru1I	TTAA	4 cut(s)	77, 453, 825, 872
Tru9I	TTAA	4 cut(s)	77, 453, 825, 872
TscAI	CASTG	3 cut(s)	34, 391, 817
TseI	GCWGC	1 cut(s)	623
TspDTI	ATGAA	3 cut(s)	504, 620, 933
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	3 cut(s)	34, 391, 817
VpaK11BI	GGWCC	1 cut(s)	655
XapI	RAATTY	1 cut(s)	750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmnI	GAANNNNTTC	2 cut(s)	267, 351
XspI	CTAG	2 cut(s)	188, 533
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.