RchiOBHm_Chr1g0331221

Histidine protein methyltransferase 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
21068559 .. 21071168
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56025

Sequence Viewer

Length: 585 bp
ATGCTAATTTTCTTTGGTCCTTGCTACTGTAGTTCTTGTTCATACAGATTCCTAATTATTGCTTTGGCTATTGAAATTTATAACTTAATACTTGGCTGTGGTCATGGACTTCCTGGTATCTTTGCCTGCCTTGAGGGTGCAGCTGCTATTCATTTCCAAGACTTCAATGCTGAGGTCCTGCAATGTCTCACAATACCCAATGTAAATGCAAATGTTCCAAGCTTCCAACCCCCAGCATTGCAAGAGACAAAGTGTGATAAGGGGGCGGAAATTCTTTTTTTTGCTGGGGACTGGCGTGAATTCAGGGAAAACCCAGATGCTCAATATGATATTATTTTAATGGCAGAGACAGTTTACTCAATCTCCACTCTCCAGCATCTCTATGAACTCATAAAGAAGTGCATCACTCGTCCTCATGGAGTAGTCTACTTGGCAGCCAAGAAGCATTATTTTGGAGTAGGAGGGGGAACTCGAAGGTTCCTATCAGTGGTGGAGAAAGATGGTGTTCTGGTTTCTAGCATGGTTGCTGAAGTTGCAGATGGCTCATCTAATGTCCGAGAGGTGTGGAAGCTTTCATTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

194

Amino Acids

21.51

Weight (kDa)

5.94

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccI GTMKAC 1 cut(s) 426
AciI CCGC 1 cut(s) 266
AcsI RAATTY 3 cut(s) 75, 270, 299
AcuI CTGAAG 1 cut(s) 549
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 2 cut(s) 74, 166
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 3 cut(s) 143, 222, 571
AluI AGCT 3 cut(s) 143, 222, 571
Alw26I GTCTC 3 cut(s) 191, 239, 341
ApeKI GCWGC 3 cut(s) 140, 143, 434
ApoI RAATTY 3 cut(s) 75, 270, 299
AspS9I GGNCC 2 cut(s) 17, 175
AvaII GGWCC 2 cut(s) 17, 175
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 130, 152, 446
BccI CCATC 2 cut(s) 494, 533
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 191, 239, 341
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 28
BisI GCNGC 3 cut(s) 141, 144, 435
BlsI GCNGC 3 cut(s) 142, 145, 436
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 2 cut(s) 17, 175
BmgT120I GGNCC 2 cut(s) 17, 175
BmiI GGNNCC 1 cut(s) 479
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 3 cut(s) 307, 385, 411
BpmI CTGGAG 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 2 cut(s) 188, 236
BseBI CCWGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMI GCAATG 2 cut(s) 188, 236
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 3 cut(s) 130, 152, 446
BseYI CCCAGC 2 cut(s) 232, 284
BsgI GTGCAG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 3 cut(s) 191, 239, 341
BsmFI GGGAC 1 cut(s) 302
BspACI CCGC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 479
BsrDI GCAATG 2 cut(s) 188, 236
BsrI ACTGG 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 29, 352
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 171
BstMAI GTCTC 3 cut(s) 191, 239, 341
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 28
BstV1I GCAGC 3 cut(s) 130, 152, 446
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 17, 175
CviAII CATG 3 cut(s) 104, 416, 520
CviJI RGCY 7 cut(s) 68, 96, 143, 222, 437, 543, 571
CviKI_1 RGCY 7 cut(s) 68, 96, 143, 222, 437, 543, 571
DdeI CTNAG 1 cut(s) 171
EciI GGCGGA 1 cut(s) 281
Eco47I GGWCC 2 cut(s) 17, 175
Eco57I CTGAAG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 3 cut(s) 107, 419, 523
FaiI YATR 8 cut(s) 43, 81, 105, 327, 384, 392, 417, 521
FaqI GGGAC 1 cut(s) 302
FatI CATG 3 cut(s) 103, 415, 519
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 141, 144, 435
Fsp4HI GCNGC 3 cut(s) 141, 144, 435
FspBI CTAG 1 cut(s) 516
GluI GCNGC 3 cut(s) 141, 144, 435
GsaI CCCAGC 2 cut(s) 236, 288
GsuI CTGGAG 1 cut(s) 356
Hin1II CATG 3 cut(s) 107, 419, 523
HindIII AAGCTT 2 cut(s) 220, 569
HinfI GANTC 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 355, 427
Hpy188I TCNGA 1 cut(s) 557
Hpy8I GTNNAC 2 cut(s) 355, 427
HpyAV CCTTC 1 cut(s) 468
HpyCH4III ACNGT 2 cut(s) 29, 352
HpyCH4V TGCA 6 cut(s) 140, 181, 209, 241, 402, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 3 cut(s) 107, 419, 523
Lsp1109I GCAGC 3 cut(s) 130, 152, 446
LweI GCATC 3 cut(s) 307, 385, 411
MaeI CTAG 1 cut(s) 516
MluCI AATT 5 cut(s) 6, 54, 75, 270, 299
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 5 cut(s) 127, 166, 423, 455, 553
MseI TTAA 3 cut(s) 86, 338, 579
MslI CAYNNNNRTG 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 533
NlaIII CATG 3 cut(s) 107, 419, 523
NlaIV GGNNCC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 142, 145, 436
PpuMI RGGWCCY 1 cut(s) 175
PsiI TTATAA 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 2 cut(s) 232, 284
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 479
PspPI GGNCC 2 cut(s) 17, 175
PspPPI RGGWCCY 1 cut(s) 175
PsrI GAACNNNNNNTAC 2 cut(s) 22, 54
PvuII CAGCTG 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 3 cut(s) 86, 338, 579
SatI GCNGC 3 cut(s) 141, 144, 435
Sau96I GGNCC 2 cut(s) 17, 175
ScrFI CCNGG 1 cut(s) 114
SetI ASST 6 cut(s) 145, 177, 224, 479, 564, 573
SfaNI GCATC 3 cut(s) 307, 385, 411
SfcI CTRYAG 1 cut(s) 28
SinI GGWCC 2 cut(s) 17, 175
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 5 cut(s) 6, 54, 75, 270, 299
SsiI CCGC 1 cut(s) 266
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 29, 352
TaqI TCGA 1 cut(s) 472
TasI AATT 5 cut(s) 6, 54, 75, 270, 299
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 3 cut(s) 86, 338, 579
Tru9I TTAA 3 cut(s) 86, 338, 579
TscAI CASTG 1 cut(s) 492
TseI GCWGC 3 cut(s) 140, 143, 434
TspDTI ATGAA 4 cut(s) 30, 140, 399, 564
TspRI CASTG 1 cut(s) 492
VpaK11BI GGWCC 2 cut(s) 17, 175
XapI RAATTY 3 cut(s) 75, 270, 299
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.