Rh4BG034600

Histidine protein methyltransferase 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006354
Physical Location & Seq
Forward (+)
6294994 .. 6297227
2234 bp
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UTR
Exon/CDS
Intron
Rh4BG034600.1

Sequence Viewer

Length: 456 bp
ATGGACTTCCTGGACTTCAATGCTAAGATCCTGCAATGTCTCATAATACCTAATGTAAATGCAAATGTTCCAAGCTTCCAACCCCCAGCATTGCAAGAGACAAAGTGTGATAAGGGGGTGGAAATTCGTTTTTTTGCTGGGGACTGGCATGAAGTCCATAACCTTCTTCCCTATGCACAAAACAATGAGAAGGATGCTAAGTGCATCACTCGTCCTCATGGAGTAGTCTACTTGGCAGCCAAGAAGCATTATTTTGGAGTAGGAGGGGGAACTCGAAAGTTCCTATCAGTGGTGAAGAAAGATGCCAAAACAACTACTATGGAGAAACTGGAAGTTAATATGAAAACAGCTGCCACCCCAATTCTTATACAGGTCAGGAATGATGTTACGAGATACCGCTATGGGGATGAGCAGCATGTGGATGAGGTGTTAAAACGAATTTTCCAGTATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

151

Amino Acids

17.23

Weight (kDa)

8.94

Isoelectric Point (pI)

31.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2854 PF11016 103 - 147 2.8e-10 Protein of unknown function (DUF2854)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AciI CCGC 1 cut(s) 397
AclWI GGATC 1 cut(s) 22
AcsI RAATTY 2 cut(s) 123, 438
AfiI CCNNNNNNNGG 2 cut(s) 289, 403
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 2 cut(s) 75, 350
AluI AGCT 2 cut(s) 75, 350
Alw26I GTCTC 2 cut(s) 44, 92
AlwI GGATC 1 cut(s) 22
ApeKI GCWGC 3 cut(s) 236, 350, 412
ApoI RAATTY 2 cut(s) 123, 438
AsuHPI GGTGA 1 cut(s) 304
BbvI GCAGC 3 cut(s) 248, 337, 424
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 2 cut(s) 44, 92
BisI GCNGC 3 cut(s) 237, 351, 413
BlsI GCNGC 3 cut(s) 238, 352, 414
Bme1390I CCNGG 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 3 cut(s) 184, 213, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 403
Bse1I ACTGG 3 cut(s) 149, 333, 445
Bse3DI GCAATG 2 cut(s) 41, 89
BseBI CCWGG 1 cut(s) 11
BseGI GGATG 3 cut(s) 199, 412, 427
BseLI CCNNNNNNNGG 2 cut(s) 289, 403
BseMI GCAATG 2 cut(s) 41, 89
BseNI ACTGG 3 cut(s) 149, 333, 445
BseXI GCAGC 3 cut(s) 248, 337, 424
BseYI CCCAGC 2 cut(s) 85, 137
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 289, 403
BsmAI GTCTC 2 cut(s) 44, 92
BsmFI GGGAC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 27
BspACI CCGC 1 cut(s) 397
BspPI GGATC 1 cut(s) 22
BsrDI GCAATG 2 cut(s) 41, 89
BsrI ACTGG 3 cut(s) 149, 333, 445
BssMI GATC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 24, 198
BstF5I GGATG 3 cut(s) 199, 412, 427
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 2 cut(s) 44, 92
BstMBI GATC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 3 cut(s) 248, 337, 424
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BtsCI GGATG 3 cut(s) 199, 412, 427
BtsIMutI CAGTG 1 cut(s) 294
CviAII CATG 3 cut(s) 149, 218, 416
CviJI RGCY 3 cut(s) 75, 239, 350
CviKI_1 RGCY 3 cut(s) 75, 239, 350
DdeI CTNAG 2 cut(s) 24, 198
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 9
FaeI CATG 3 cut(s) 152, 221, 419
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 148, 217, 415
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 3 cut(s) 237, 351, 413
FokI GGATG 3 cut(s) 206, 419, 434
Fsp4HI GCNGC 3 cut(s) 237, 351, 413
GluI GCNGC 3 cut(s) 237, 351, 413
GsaI CCCAGC 2 cut(s) 89, 141
Hin1II CATG 3 cut(s) 152, 221, 419
HindIII AAGCTT 1 cut(s) 73
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 173, 184
HpyCH4V TGCA 5 cut(s) 34, 62, 94, 176, 204
HpyF3I CTNAG 2 cut(s) 24, 198
Hsp92II CATG 3 cut(s) 152, 221, 419
Kzo9I GATC 1 cut(s) 27
LpnPI CCDG 8 cut(s) 23, 44, 99, 123, 130, 314, 356, 361
Lsp1109I GCAGC 3 cut(s) 248, 337, 424
LweI GCATC 3 cut(s) 184, 213, 292
MaeIII GTNAC 1 cut(s) 385
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 2 cut(s) 158, 307
MflI RGATCY 1 cut(s) 27
MluCI AATT 3 cut(s) 123, 360, 438
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 3 cut(s) 225, 257, 418
MseI TTAA 2 cut(s) 336, 431
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
NdeII GATC 1 cut(s) 27
NlaIII CATG 3 cut(s) 152, 221, 419
NspI RCATGY 1 cut(s) 419
PfoI TCCNGGA 1 cut(s) 9
PkrI GCNGC 3 cut(s) 238, 352, 414
Psp6I CCWGG 1 cut(s) 9
PspFI CCCAGC 2 cut(s) 85, 137
PspGI CCWGG 1 cut(s) 9
PsuI RGATCY 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 2 cut(s) 336, 431
SatI GCNGC 3 cut(s) 237, 351, 413
Sau3AI GATC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 11
SetI ASST 6 cut(s) 52, 77, 165, 352, 375, 429
SfaNI GCATC 3 cut(s) 184, 213, 292
SmiMI CAYNNNNRTG 1 cut(s) 420
Sse9I AATT 3 cut(s) 123, 360, 438
SsiI CCGC 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 9
TaqI TCGA 1 cut(s) 274
TasI AATT 3 cut(s) 123, 360, 438
Tru1I TTAA 2 cut(s) 336, 431
Tru9I TTAA 2 cut(s) 336, 431
TscAI CASTG 1 cut(s) 294
TseI GCWGC 3 cut(s) 236, 350, 412
TspDTI ATGAA 2 cut(s) 165, 356
TspRI CASTG 1 cut(s) 294
XapI RAATTY 2 cut(s) 123, 438
XceI RCATGY 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.