Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Reverse (-)

41008680 .. 41012058

Gene Structure 3379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG190100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGTCCGAGAAACCAAGTTTCGAACCATTTCGGCTCTTCTCATCATCAGGGTCAGGATTATTTGACCGATCAGAGCCCCCTCTTCCTCCGCCACCTCCTTGCGTCGAAGTGCTTCCCTCGCAGATTTCGCAGTCTGTGAAGTACACTGTGGAGCCAGTAGAATTGGGTGGACTTACATTGCTCAAGGGCCGAGTTAGTACTCAAGATGTTTTTACACTGTCCAACTCCGATTTAGTTCCGGGGAAATATGAAGGGGGACTAAAGCTATGGGAAGGTTCGCTTGATCTAGTAAAAGCTCTTAGCTCTGAAGTTCAAAATGGACATCTATCATTTGCCGGTAAACGAGTTTTAGAGCTTGGCTGTGGTCATGGACTTCCCGGTATCTTTGCCTGCCTTGAGGGTGCAGCTGCTATTCATTTCCAAGACTTCAATGCTGAGGTCCTGCAATGTCTCACAATACCCAATGTAAATGCAAATGTTCCAAGCTTCCAACCCCCAGCATTGCAAGAGACAAAGTGTGATAAGGGGGCAGAAATTCGTTTTTTTGCTGGGGACTGGCGTGAAGTCCATAACCATCTTCCCTATGCACAAAACACTGAGAAGGATGTTAATGTTAGTTCAGGGCAAAACCCAGATGCTCAATATGATATTATGTTAATGGCAGAGACAGTTTACTCAATCTCCACTCTCCAGCATCTCTATGAACTCATAAAGAAGTGCATCATTCGTCCTCATGGAGTAGTCTACTTGGCAGCCAAGAAGCATTATTTTGGAGTAGGAGGGGGAACTCGAAGGTTCCTATCAGTGGTGGAGAAAGATGGTGAGCTAGTTGGAAATTTAGACTCATGTTTAAAAAAATTACAGAGCATTATATCACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

294

Amino Acids

32.09

Weight (kDa)

5.64

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	747
AciI	CCGC	1 cut(s)	92
AcsI	RAATTY	2 cut(s)	537, 838
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	2 cut(s)	146, 202
AfiI	CCNNNNNNNGG	1 cut(s)	808
AgsI	TTSAA	2 cut(s)	317, 433
AluBI	AGCT	7 cut(s)	268, 299, 306, 358, 410, 489, 829
AluI	AGCT	7 cut(s)	268, 299, 306, 358, 410, 489, 829
Alw26I	GTCTC	3 cut(s)	458, 506, 662
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	3 cut(s)	407, 410, 755
ApoI	RAATTY	2 cut(s)	537, 838
Asp700I	GAANNNNTTC	2 cut(s)	30, 114
AspS9I	GGNCC	2 cut(s)	190, 442
AsuC2I	CCSGG	2 cut(s)	243, 381
AsuHPI	GGTGA	2 cut(s)	836, 870
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	397, 419, 767
BccI	CCATC	2 cut(s)	585, 815
BcnI	CCSGG	2 cut(s)	243, 381
BcoDI	GTCTC	3 cut(s)	458, 506, 662
BfaI	CTAG	2 cut(s)	290, 830
BisI	GCNGC	3 cut(s)	408, 411, 756
BlsI	GCNGC	3 cut(s)	409, 412, 757
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	243, 381
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	190, 442
BmiI	GGNNCC	2 cut(s)	156, 800
BmrFI	CCNGG	2 cut(s)	243, 381
BmsI	GCATC	3 cut(s)	628, 706, 732
BpmI	CTGGAG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	3 cut(s)	170, 189, 419
BpuMI	CCSGG	2 cut(s)	243, 381
BsaJI	CCNNGG	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	1 cut(s)	808
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	2 cut(s)	158, 563
Bse3DI	GCAATG	3 cut(s)	179, 455, 503
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	1 cut(s)	808
BseMI	GCAATG	3 cut(s)	179, 455, 503
BseMII	CTCAG	2 cut(s)	429, 591
BseNI	ACTGG	2 cut(s)	158, 563
BseXI	GCAGC	3 cut(s)	397, 419, 767
BseYI	CCCAGC	2 cut(s)	499, 551
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	242, 339, 381
BslFI	GGGAC	2 cut(s)	273, 569
BslI	CCNNNNNNNGG	1 cut(s)	808
BsmAI	GTCTC	3 cut(s)	458, 506, 662
BsmFI	GGGAC	2 cut(s)	273, 569
BsnI	GGCC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	71, 286
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	430, 592
BspLI	GGNNCC	2 cut(s)	156, 800
BspQI	GCTCTTC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	24
BsrDI	GCAATG	3 cut(s)	179, 455, 503
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	158, 563
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	71, 286
Bst4CI	ACNGT	3 cut(s)	151, 222, 673
Bst6I	CTCTTC	2 cut(s)	44, 90
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	3 cut(s)	302, 438, 600
BstF5I	GGATG	1 cut(s)	613
BstKTI	GATC	2 cut(s)	74, 289
BstMAI	GTCTC	3 cut(s)	458, 506, 662
BstMBI	GATC	2 cut(s)	71, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 130
BstSCI	CCNGG	2 cut(s)	241, 379
BstV1I	GCAGC	3 cut(s)	397, 419, 767
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	613
BtsIMutI	CAGTG	4 cut(s)	147, 218, 597, 813
Cac8I	GCNNGC	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	190, 442
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	145, 201
CviAII	CATG	3 cut(s)	371, 737, 849
CviQI	GTAC	2 cut(s)	145, 201
DdeI	CTNAG	3 cut(s)	302, 438, 600
DpnI	GATC	2 cut(s)	73, 288
DpnII	GATC	2 cut(s)	71, 286
DraI	TTTAAA	1 cut(s)	855
Eam1104I	CTCTTC	2 cut(s)	44, 90
EarI	CTCTTC	2 cut(s)	44, 90
EciI	GGCGGA	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	3 cut(s)	374, 740, 852
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	2 cut(s)	273, 569
FatI	CATG	3 cut(s)	370, 736, 848
FblI	GTMKAC	1 cut(s)	747
Fnu4HI	GCNGC	3 cut(s)	408, 411, 756
FokI	GGATG	1 cut(s)	620
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	408, 411, 756
FspBI	CTAG	2 cut(s)	290, 830
GluI	GCNGC	3 cut(s)	408, 411, 756
GsaI	CCCAGC	2 cut(s)	503, 555
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	3 cut(s)	242, 339, 381
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	374, 740, 852
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	2 cut(s)	5, 845
HpaII	CCGG	3 cut(s)	242, 339, 381
HphI	GGTGA	2 cut(s)	836, 870
Hpy166II	GTNNAC	5 cut(s)	147, 173, 344, 676, 748
Hpy188I	TCNGA	4 cut(s)	10, 76, 232, 310
Hpy188III	TCNNGA	2 cut(s)	57, 206
Hpy8I	GTNNAC	5 cut(s)	147, 173, 344, 676, 748
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	248, 269, 598, 789
HpyCH4III	ACNGT	3 cut(s)	151, 222, 673
HpyCH4V	TGCA	6 cut(s)	407, 448, 476, 508, 590, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 130
HpyF3I	CTNAG	3 cut(s)	302, 438, 600
Hsp92II	CATG	3 cut(s)	374, 740, 852
Kzo9I	GATC	2 cut(s)	71, 286
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	3 cut(s)	397, 419, 767
LweI	GCATC	3 cut(s)	628, 706, 732
MaeI	CTAG	2 cut(s)	290, 830
MalI	GATC	2 cut(s)	73, 288
MboI	GATC	2 cut(s)	71, 286
MboII	GAAGA	3 cut(s)	31, 77, 572
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	4 cut(s)	164, 537, 838, 860
MlyI	GAGTC	2 cut(s)	14, 839
MmeI	TCCRAC	3 cut(s)	249, 517, 814
MnlI	CCTC	8 cut(s)	93, 99, 108, 130, 394, 433, 744, 776
MroXI	GAANNNNTTC	2 cut(s)	30, 114
MseI	TTAA	3 cut(s)	612, 659, 854
MslI	CAYNNNNRTG	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	3 cut(s)	242, 339, 381
MspR9I	CCNGG	2 cut(s)	243, 381
MwoI	GCNNNNNNNGC	2 cut(s)	121, 130
NciI	CCSGG	2 cut(s)	243, 381
NdeII	GATC	2 cut(s)	71, 286
NlaIII	CATG	3 cut(s)	374, 740, 852
NlaIV	GGNNCC	2 cut(s)	156, 800
NmeAIII	GCCGAG	1 cut(s)	218
NspV	TTCGAA	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	44
PdmI	GAANNNNTTC	2 cut(s)	30, 114
PkrI	GCNGC	3 cut(s)	409, 412, 757
PleI	GAGTC	2 cut(s)	13, 839
PpsI	GAGTC	2 cut(s)	13, 839
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
PspFI	CCCAGC	2 cut(s)	499, 551
PspN4I	GGNNCC	2 cut(s)	156, 800
PspPI	GGNCC	2 cut(s)	190, 442
PspPPI	RGGWCCY	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	146, 202
RsaNI	GTAC	2 cut(s)	145, 201
RseI	CAYNNNNRTG	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	612, 659, 854
SatI	GCNGC	3 cut(s)	408, 411, 756
Sau3AI	GATC	2 cut(s)	71, 286
Sau96I	GGNCC	2 cut(s)	190, 442
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	2 cut(s)	14, 839
ScrFI	CCNGG	2 cut(s)	243, 381
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	3 cut(s)	628, 706, 732
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	3 cut(s)	185, 204, 398
SmoI	CTYRAG	3 cut(s)	185, 204, 398
Sse9I	AATT	4 cut(s)	164, 537, 838, 860
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	2 cut(s)	290, 830
StyD4I	CCNGG	2 cut(s)	241, 379
TaaI	ACNGT	3 cut(s)	151, 222, 673
TaqI	TCGA	3 cut(s)	24, 108, 793
TaqII	GACCGA	1 cut(s)	84
TasI	AATT	4 cut(s)	164, 537, 838, 860
TatI	WGTACW	2 cut(s)	144, 200
Tru1I	TTAA	3 cut(s)	612, 659, 854
Tru9I	TTAA	3 cut(s)	612, 659, 854
TscAI	CASTG	4 cut(s)	154, 225, 604, 813
TseI	GCWGC	3 cut(s)	407, 410, 755
TspDTI	ATGAA	3 cut(s)	267, 407, 720
TspRI	CASTG	4 cut(s)	154, 225, 604, 813
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	2 cut(s)	537, 838
XmiI	GTMKAC	1 cut(s)	747
XmnI	GAANNNNTTC	2 cut(s)	30, 114
XspI	CTAG	2 cut(s)	290, 830
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.