Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006354

Physical Location & Seq

Genomic Coordinates Reverse (-)

20014895 .. 20017854

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG116300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCCCCCTGTTCCTCCTCCACCTCCCTGCGTCGAAGTGCTTCCCTCTCAGGGCCGAGTTAGTACTCAAGATGTTTTTAAGCTGTCCAACTTCGATTTAATTCCGGGGAAATATGAAGGGGGACTAAAGCTATGGGAAGGTTCACTTGATCTAGTAAAAGCTCTTAGCTCTGAAGTTCAAAATGGACATCTATCATTTGCCGGTAAACGAGTTTTAGAGCTTGGCTGTGGTCATGGACTTCCTGGTATCTTTGCCTGCCTTGAGGGTGCAGCTGCTATTCATTTCCAAGACTTCAATGTTGAGGTCCTGCAATGGCAAAACCCAGATGCTCAATATGATATTATTTTAATGGCAGAGACAGTTTACTCAATCTCCACTCTCCAGCATCTCTATGAACTCATAAAGAAGTGCATCACTCGTCCTCATGGAGTAGTCTACTTGGCAGCCAAGAAGCATTATTTTGGAGTAGGAGGGGGAACTCGAAGGTTCCTATCAGTGGTGGAGAAAGATGGTGTTCTGGTTTCTAGCATGGTTGCTGAAGTTGCAGATGGCTCATCTAATGTCCGAGAGGTGTGGATGCTTTCATTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

197

Amino Acids

21.54

Weight (kDa)

6.06

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14000
fragaria_vesca	FvH4_4g13200 FvH4_4g13200
malus_domestica	MD04G1018000.v1.1
prunus_persica	Prupe.1G166800_v2.0.a1 Prupe.1G166800_v2.0.a1
pyrus_communis	pycom04g01420 pycom13g29130
rosa_chinensis	RchiOBHm_Chr1g0331221 RchiOBHm_Chr1g0331231 RchiOBHm_Chr4g0413351 RchiOBHm_Chr5g0007081
rosa_laevigata	RLG00000008224
rosa_multiflora	Rmu_sc0000597.1_g000002 Rmu_sc0007671.1_g000001 Rmu_sc0009573.1_g000010 Rmu_sc0037927.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357270
rosa_rugosa	Rorug04G0120100
rosa_samantha	Rh1AG116300 Rh1CG111900 Rh4AG179500 Rh4BG034600 Rh4BG178600 Rh4CG190100
rosa_wichuraiana	Rw4G014920 Rw5G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	435
AcuI	CTGAAG	2 cut(s)	192, 558
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	50, 496
AgsI	TTSAA	2 cut(s)	179, 295
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	6 cut(s)	82, 130, 161, 168, 220, 272
AluI	AGCT	6 cut(s)	82, 130, 161, 168, 220, 272
Alw26I	GTCTC	1 cut(s)	350
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	269, 272, 443
Asp700I	GAANNNNTTC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	52, 304
AsuC2I	CCSGG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	259, 281, 455
BccI	CCATC	2 cut(s)	503, 542
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	152, 525
BisI	GCNGC	3 cut(s)	270, 273, 444
BlsI	GCNGC	3 cut(s)	271, 274, 445
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	105, 243
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	52, 304
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	2 cut(s)	105, 243
BmsI	GCATC	4 cut(s)	316, 394, 420, 567
BpmI	CTGGAG	1 cut(s)	365
BpuEI	CTTGAG	2 cut(s)	51, 281
BpuMI	CCSGG	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 496
Bse118I	RCCGGY	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	582
BseLI	CCNNNNNNNGG	2 cut(s)	50, 496
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	259, 281, 455
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	104, 201
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	50, 496
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	48, 164
BstF5I	GGATG	1 cut(s)	582
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	103, 241
BstV1I	GCAGC	3 cut(s)	259, 281, 455
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	52, 304
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	3 cut(s)	233, 425, 529
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	2 cut(s)	48, 164
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	192, 558
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	241
FaeI	CATG	3 cut(s)	236, 428, 532
FaiI	YATR	8 cut(s)	114, 133, 234, 336, 393, 401, 426, 530
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	3 cut(s)	232, 424, 528
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	270, 273, 444
FokI	GGATG	1 cut(s)	589
Fsp4HI	GCNGC	3 cut(s)	270, 273, 444
FspBI	CTAG	2 cut(s)	152, 525
GluI	GCNGC	3 cut(s)	270, 273, 444
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	2 cut(s)	104, 201
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	3 cut(s)	236, 428, 532
HpaII	CCGG	2 cut(s)	104, 201
Hpy166II	GTNNAC	4 cut(s)	143, 206, 364, 436
Hpy188I	TCNGA	2 cut(s)	172, 566
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	4 cut(s)	143, 206, 364, 436
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	110, 131, 477
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	4 cut(s)	269, 310, 411, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	2 cut(s)	48, 164
Hsp92II	CATG	3 cut(s)	236, 428, 532
Kzo9I	GATC	1 cut(s)	148
Lsp1109I	GCAGC	3 cut(s)	259, 281, 455
LweI	GCATC	4 cut(s)	316, 394, 420, 567
MaeI	CTAG	2 cut(s)	152, 525
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MluCI	AATT	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	9 cut(s)	24, 27, 33, 55, 256, 295, 432, 464, 562
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	4 cut(s)	78, 98, 347, 588
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	2 cut(s)	104, 201
MspR9I	CCNGG	2 cut(s)	105, 243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	3 cut(s)	236, 428, 532
NlaIV	GGNNCC	1 cut(s)	488
NmeAIII	GCCGAG	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	271, 274, 445
PpuMI	RGGWCCY	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	2 cut(s)	52, 304
PspPPI	RGGWCCY	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	78, 98, 347, 588
SatI	GCNGC	3 cut(s)	270, 273, 444
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	2 cut(s)	52, 304
ScaI	AGTACT	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	105, 243
SfaNI	GCATC	4 cut(s)	316, 394, 420, 567
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	66, 260
SmoI	CTYRAG	2 cut(s)	66, 260
Sse9I	AATT	1 cut(s)	99
SspMI	CTAG	2 cut(s)	152, 525
StyD4I	CCNGG	2 cut(s)	103, 241
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	3 cut(s)	33, 93, 481
TasI	AATT	1 cut(s)	99
TatI	WGTACW	1 cut(s)	62
Tru1I	TTAA	4 cut(s)	78, 98, 347, 588
Tru9I	TTAA	4 cut(s)	78, 98, 347, 588
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	3 cut(s)	269, 272, 443
TspDTI	ATGAA	4 cut(s)	129, 269, 408, 573
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	2 cut(s)	152, 525
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.