Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010558

Physical Location & Seq

Genomic Coordinates Forward (+)

24728825 .. 24730916

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTGGGGTCAAATGGTTCCGGTGGCCGTCCCGTTAAAACCGGCAATCCCTTTCCCCGGCAGCCGGAAAGCTTCCTCCGTCGTGTCACGAAAATTGAATAATCCATCTCTATCGAAGTTGCAACTATCAAATATCGATATCCCACCCTCCCAAACACAACCTCTGCTTTCTTCTTCTTCTTCTTCTTCCTCTGAAACTGCTCCGTCCGTACAACCCGTCAGAACCCTGCGGATTCGACCTTCTCCCGAATTGGGCCTTGCCTCACTGCTCTTCGTCCTCTCCACGGCTTTTGCTGCGCTTCTCTCCCTTGCTATATTTTCCATTCCAACTATCAATGCTTTGAGAAAATTGGCAACTTCAATGGAGAAGCTATCCCATGTAGTCTCCCAGGAGGTACCTGGAACTCTGCTTTCTTTGAAACTCTCTGGCCTTGAGGTCAATGATTTAACAAAACAGCTTACTAGTATCAGGCAAATGATTTCTGCAACTGGCTCGGGGAAGAATTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

17.98

Weight (kDa)

10.79

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21731 FvH4_4g21731 FvH4_4g21731
malus_domestica	MD13G1137900.v1.1 MD16G1133700.v1.1
pyrus_communis	pycom13g12000 pycom16g11810
rosa_chinensis	RchiOBHm_Chr4g0427931 RchiOBHm_Chr4g0427961
rosa_laevigata	RLG00000007197 RLG00000007199
rosa_multiflora	Rmu_sc0000066.1_g000010 Rmu_sc0000066.1_g000012 Rmu_sc0009221.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369600
rosa_rugosa	Rorug04G0220600
rosa_samantha	Rh4AG277800 Rh4AG278000 Rh4CG299000 Rh4CG299200
rosa_wichuraiana	Rw4G024130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	394
AciI	CCGC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	502
AfaI	GTAC	2 cut(s)	210, 396
AfiI	CCNNNNNNNGG	4 cut(s)	56, 63, 251, 283
AgsI	TTSAA	4 cut(s)	97, 360, 418, 507
AhlI	ACTAGT	1 cut(s)	461
AjnI	CCWGG	2 cut(s)	387, 397
AluBI	AGCT	3 cut(s)	71, 370, 457
AluI	AGCT	3 cut(s)	71, 370, 457
Alw26I	GTCTC	1 cut(s)	388
Ama87I	CYCGRG	1 cut(s)	493
AoxI	GGCC	3 cut(s)	24, 253, 427
ApeKI	GCWGC	2 cut(s)	60, 293
ApoI	RAATTY	1 cut(s)	502
Asp718I	GGTACC	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	72, 280
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	2 cut(s)	11, 300
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BciT130I	CCWGG	2 cut(s)	389, 399
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	388
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	1 cut(s)	462
BisI	GCNGC	2 cut(s)	61, 294
BlsI	GCNGC	2 cut(s)	62, 295
Bme1390I	CCNGG	3 cut(s)	57, 389, 399
BmeT110I	CYCGRG	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	2 cut(s)	18, 396
BmrFI	CCNGG	3 cut(s)	57, 389, 399
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	55, 282, 387
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 63, 251, 283
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	2 cut(s)	389, 399
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	55, 282, 387
BseLI	CCNNNNNNNGG	4 cut(s)	56, 63, 251, 283
BseNI	ACTGG	1 cut(s)	493
BseXI	GCAGC	2 cut(s)	72, 280
BshFI	GGCC	3 cut(s)	26, 255, 429
BshNI	GGYRCC	1 cut(s)	394
BshVI	ATCGAT	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	4 cut(s)	20, 41, 57, 64
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	4 cut(s)	56, 63, 251, 283
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	3 cut(s)	26, 255, 429
BsoBI	CYCGRG	1 cut(s)	493
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	3 cut(s)	26, 255, 429
BspDI	ATCGAT	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	18, 396
BspQI	GCTCTTC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	55, 282, 387
Bst2UI	CCWGG	2 cut(s)	389, 399
Bst6I	CTCTTC	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	2 cut(s)	389, 399
BstSCI	CCNGG	3 cut(s)	55, 387, 397
BstV1I	GCAGC	2 cut(s)	72, 280
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	26, 255, 429
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	253
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	209, 395
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	9 cut(s)	26, 63, 71, 255, 287, 370, 429, 457, 492
CviKI_1	RGCY	9 cut(s)	26, 63, 71, 255, 287, 370, 429, 457, 492
CviQI	GTAC	2 cut(s)	209, 395
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco32I	GATATC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	387, 397
EcoRV	GATATC	1 cut(s)	139
FaeI	CATG	1 cut(s)	380
FaiI	YATR	2 cut(s)	314, 378
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	61, 294
Fsp4HI	GCNGC	2 cut(s)	61, 294
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	2 cut(s)	61, 294
HaeIII	GGCC	3 cut(s)	26, 255, 429
HapII	CCGG	4 cut(s)	20, 41, 57, 64
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	4 cut(s)	20, 41, 57, 64
Hpy188I	TCNGA	2 cut(s)	193, 221
Hpy188III	TCNNGA	2 cut(s)	87, 245
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	121, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	1 cut(s)	296
KpnI	GGTACC	1 cut(s)	398
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	2 cut(s)	72, 280
MaeI	CTAG	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	84
MboII	GAAGA	8 cut(s)	162, 165, 168, 171, 174, 177, 262, 511
MluCI	AATT	4 cut(s)	92, 248, 347, 502
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	8 cut(s)	85, 157, 171, 199, 271, 287, 385, 427
MseI	TTAA	2 cut(s)	35, 446
MspI	CCGG	4 cut(s)	20, 41, 57, 64
MspR9I	CCNGG	3 cut(s)	57, 389, 399
MvaI	CCWGG	2 cut(s)	389, 399
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	57
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	2 cut(s)	18, 396
NmuCI	GTSAC	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	62, 295
Psp6I	CCWGG	2 cut(s)	387, 397
PspGI	CCWGG	2 cut(s)	387, 397
PspN4I	GGNNCC	2 cut(s)	18, 396
PspPI	GGNCC	1 cut(s)	253
RsaI	GTAC	2 cut(s)	210, 396
RsaNI	GTAC	2 cut(s)	209, 395
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	35, 446
SatI	GCNGC	2 cut(s)	61, 294
Sau96I	GGNCC	1 cut(s)	253
ScrFI	CCNGG	3 cut(s)	57, 389, 399
SetI	ASST	8 cut(s)	73, 163, 241, 372, 396, 400, 438, 459
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	4 cut(s)	92, 248, 347, 502
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	3 cut(s)	55, 387, 397
TaqI	TCGA	3 cut(s)	113, 135, 235
TasI	AATT	4 cut(s)	92, 248, 347, 502
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	35, 446
Tru9I	TTAA	2 cut(s)	35, 446
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	2 cut(s)	60, 293
Tsp45I	GTSAC	1 cut(s)	84
TspGWI	ACGGA	3 cut(s)	67, 192, 196
TspRI	CASTG	1 cut(s)	270
XapI	RAATTY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.