pycom13g12000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010558
Physical Location & Seq
Reverse (-)
8306888 .. 8307163
276 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12000.1

Sequence Viewer

Length: 276 bp
ATGTGGGTTCAGCCCCTTACAGTGGTCATGACGGTGAAGCCGTGGAGCTCTCCTCACGGCGGCAGCCGCACAACCGCCTTTCTTGTTTCCCAAAATCCCAATATTCCATCTGCATCGACGCAGCAACTGCCGATACTCCTAAAACCCACGTTCAATTCAAGGACTCCATCCTCCCAAGTCCCAAACGCAACCGCTGCTATCTTCTTCTTCTTCCTCCTCTGCTATTACTCCGTCCGCACAAACCGTCAAGCTCAGCGAATTCGATCCACGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.16

Weight (kDa)

11.72

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 60, 67, 75, 192, 235
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 22, 59
AgsI TTSAA 2 cut(s) 154, 159
AluBI AGCT 2 cut(s) 48, 251
AluI AGCT 2 cut(s) 48, 251
Alw21I GWGCWC 1 cut(s) 50
AlwI GGATC 1 cut(s) 258
AlwNI CAGNNNCTG 1 cut(s) 127
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 3 cut(s) 63, 121, 194
ApoI RAATTY 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 46
BanII GRGCYC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 3 cut(s) 75, 133, 181
BccI CCATC 2 cut(s) 115, 175
BceAI ACGGC 2 cut(s) 25, 73
BfaI CTAG 1 cut(s) 274
BisI GCNGC 5 cut(s) 61, 64, 67, 122, 195
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 5 cut(s) 62, 65, 68, 123, 196
BmsI GCATC 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 37, 69
Bpu1102I GCTNAGC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 41, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 59
BseDI CCNNGG 2 cut(s) 41, 267
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 22, 59
BseMII CTCAG 1 cut(s) 266
BseRI GAGGAG 2 cut(s) 42, 206
BseXI GCAGC 3 cut(s) 75, 133, 181
BshFI GGCC 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 50
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 22, 59
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 263
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 5 cut(s) 60, 67, 75, 192, 235
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 27
BspPI GGATC 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 41, 267
BssMI GATC 1 cut(s) 263
Bst4CI ACNGT 3 cut(s) 22, 34, 245
BstAPI GCANNNNNTGC 2 cut(s) 127, 194
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 2 cut(s) 41, 267
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 1 cut(s) 266
BstMBI GATC 1 cut(s) 263
BstMWI GCNNNNNNNGC 3 cut(s) 66, 127, 194
BstV1I GCAGC 3 cut(s) 75, 133, 181
BsuRI GGCC 1 cut(s) 272
BtgI CCRYGG 2 cut(s) 41, 267
BtsCI GGATG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 27
CaiI CAGNNNCTG 1 cut(s) 127
CciI TCATGA 1 cut(s) 27
CseI GACGC 1 cut(s) 127
CviAII CATG 1 cut(s) 28
CviJI RGCY 6 cut(s) 13, 40, 48, 66, 251, 272
CviKI_1 RGCY 6 cut(s) 13, 40, 48, 66, 251, 272
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 1 cut(s) 31
FaiI YATR 1 cut(s) 29
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 27
Fnu4HI GCNGC 5 cut(s) 61, 64, 67, 122, 195
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 5 cut(s) 61, 64, 67, 122, 195
FspBI CTAG 1 cut(s) 274
GluI GCNGC 5 cut(s) 61, 64, 67, 122, 195
HaeIII GGCC 1 cut(s) 272
HgaI GACGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 31
HinfI GANTC 1 cut(s) 163
HphI GGTGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 121
HpyCH4III ACNGT 3 cut(s) 22, 34, 245
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 127, 194
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 1 cut(s) 31
Kzo9I GATC 1 cut(s) 263
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 3 cut(s) 75, 133, 181
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 274
MaeII ACGT 1 cut(s) 149
MalI GATC 1 cut(s) 265
MboI GATC 1 cut(s) 263
MboII GAAGA 4 cut(s) 193, 196, 199, 202
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 2 cut(s) 154, 258
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 4 cut(s) 63, 181, 224, 227
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 66, 127, 194
NdeII GATC 1 cut(s) 263
NlaIII CATG 1 cut(s) 31
PagI TCATGA 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PkrI GCNGC 5 cut(s) 62, 65, 68, 123, 196
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 32
SacI GAGCTC 1 cut(s) 50
SatI GCNGC 5 cut(s) 61, 64, 67, 122, 195
Sau3AI GATC 1 cut(s) 263
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 50
SetI ASST 3 cut(s) 50, 152, 253
SfaNI GCATC 1 cut(s) 122
SgeI CNNG 8 cut(s) 40, 54, 68, 95, 160, 171, 188, 260
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 2 cut(s) 154, 258
SsiI CCGC 5 cut(s) 60, 67, 75, 192, 235
SspI AATATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 274
SstI GAGCTC 1 cut(s) 50
TaaI ACNGT 3 cut(s) 22, 34, 245
TaiI ACGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 116, 262
TasI AATT 2 cut(s) 154, 258
TauI GCSGC 2 cut(s) 63, 69
TscAI CASTG 1 cut(s) 27
TseI GCWGC 3 cut(s) 63, 121, 194
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 27
XapI RAATTY 1 cut(s) 258
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.