Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010558

Physical Location & Seq

Genomic Coordinates Forward (+)

59414441 .. 59416571

Gene Structure 2131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG278000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCGGGTCAGTTGTTTCAAGTAGCCGCGACGTTGAAGCCGGCAATCCCTTTTCACGGCGGCCGGAGAGATTTCTCCGTCGTGTCCCGGAATCTGTTTACTCCATCTTTATCGAAGTTGCAACTACCAAATATCCCATCCTCCCAAATACAACCCCTGCTTTCTTCTTCTTCTTCTTCCTCTGTAACTTCTCCGTCCGTACAACTCCTCAGAGCACTGCGGATTCGACCCACACCCGAATTGGGCCTTGCCTCTCTCCTCTTCGTCCTCTTCACGGCTTTTGCTGCACTTTTCTCCCTTGCTATATTTTCCATTCCAACTATCAATGCTTTGAGAAAATTAGCAACTTCAGTGGACAAGCTATCCCATGTGGTCTCCCAGGAGGTGCCTGGAACTCTGCTTTCTCTGAAACTCTCTGGTCTTGAGGTCAATGATTTGACCAAACAGCTTACCAGTATCAGGAAAATGATTTCTGCAACTGGCTGGGGGAAGAATTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

17.91

Weight (kDa)

11.33

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21731 FvH4_4g21731 FvH4_4g21731
malus_domestica	MD13G1137900.v1.1 MD16G1133700.v1.1
pyrus_communis	pycom13g12000 pycom16g11810
rosa_chinensis	RchiOBHm_Chr4g0427931 RchiOBHm_Chr4g0427961
rosa_laevigata	RLG00000007197 RLG00000007199
rosa_multiflora	Rmu_sc0000066.1_g000010 Rmu_sc0000066.1_g000012 Rmu_sc0009221.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369600
rosa_rugosa	Rorug04G0220600
rosa_samantha	Rh4AG277800 Rh4AG278000 Rh4CG299000 Rh4CG299200
rosa_wichuraiana	Rw4G024130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	385
AccII	CGCG	1 cut(s)	29
AciI	CCGC	3 cut(s)	27, 60, 220
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	4 cut(s)	56, 242, 274, 459
AgsI	TTSAA	3 cut(s)	20, 37, 498
AjnI	CCWGG	2 cut(s)	378, 388
AluBI	AGCT	2 cut(s)	361, 448
AluI	AGCT	2 cut(s)	361, 448
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	379
AoxI	GGCC	2 cut(s)	61, 244
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	493
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	2 cut(s)	112, 145
BceAI	ACGGC	2 cut(s)	73, 291
BciT130I	CCWGG	2 cut(s)	380, 390
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	379
BisI	GCNGC	3 cut(s)	27, 61, 285
BlsI	GCNGC	3 cut(s)	28, 62, 286
Bme1390I	CCNGG	3 cut(s)	88, 380, 390
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	3 cut(s)	88, 380, 390
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 242, 274, 459
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	453, 484
BseBI	CCWGG	2 cut(s)	380, 390
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	4 cut(s)	56, 242, 274, 459
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	2 cut(s)	453, 484
BseRI	GAGGAG	2 cut(s)	197, 248
BseX3I	CGGCCG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	483
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	63, 246
BshNI	GGYRCC	1 cut(s)	385
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	3 cut(s)	41, 64, 88
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	4 cut(s)	56, 242, 274, 459
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	63, 246
Bso31I	GGTCTC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	217
BspACI	CCGC	3 cut(s)	27, 60, 220
BspANI	GGCC	2 cut(s)	63, 246
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	453, 484
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	380, 390
Bst6I	CTCTTC	2 cut(s)	266, 275
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	379
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	380, 390
BstSCI	CCNGG	3 cut(s)	86, 378, 388
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	271
BstZI	CGGCCG	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	63, 246
BtsCI	GGATG	1 cut(s)	137
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	2 cut(s)	215, 357
Cac8I	GCNNGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	200
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	8 cut(s)	26, 40, 63, 246, 278, 361, 448, 483
CviKI_1	RGCY	8 cut(s)	26, 40, 63, 246, 278, 361, 448, 483
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	61
EagI	CGGCCG	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	266, 275
EarI	CTCTTC	2 cut(s)	266, 275
EclXI	CGGCCG	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	379
Eco52I	CGGCCG	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	378, 388
FaeI	CATG	1 cut(s)	371
FaiI	YATR	2 cut(s)	305, 369
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	27, 61, 285
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	27, 61, 285
GluI	GCNGC	3 cut(s)	27, 61, 285
GsaI	CCCAGC	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	63, 246
HapII	CCGG	3 cut(s)	41, 64, 88
Hin1II	CATG	1 cut(s)	371
HinfI	GANTC	2 cut(s)	91, 223
HpaII	CCGG	3 cut(s)	41, 64, 88
Hpy166II	GTNNAC	2 cut(s)	99, 355
Hpy188I	TCNGA	2 cut(s)	212, 408
Hpy188III	TCNNGA	2 cut(s)	422, 460
Hpy8I	GTNNAC	2 cut(s)	99, 355
Hpy99I	CGWCG	2 cut(s)	34, 83
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	121, 287, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	371
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Lsp1109I	GCAGC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	184
MboII	GAAGA	8 cut(s)	156, 159, 162, 165, 168, 253, 262, 502
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	3 cut(s)	239, 338, 493
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	8 cut(s)	151, 190, 218, 262, 269, 278, 376, 418
MroNI	GCCGGC	1 cut(s)	40
MspI	CCGG	3 cut(s)	41, 64, 88
MspR9I	CCNGG	3 cut(s)	88, 380, 390
MvaI	CCWGG	2 cut(s)	380, 390
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	284
NaeI	GCCGGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	88
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	1 cut(s)	387
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	91, 223
PfoI	TCCNGGA	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	28, 62, 286
Psp6I	CCWGG	2 cut(s)	378, 388
PspFI	CCCAGC	1 cut(s)	483
PspGI	CCWGG	2 cut(s)	378, 388
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	244
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SatI	GCNGC	3 cut(s)	27, 61, 285
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	3 cut(s)	88, 380, 390
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	5 cut(s)	35, 363, 387, 429, 450
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	239, 338, 493
SsiI	CCGC	3 cut(s)	27, 60, 220
StyD4I	CCNGG	3 cut(s)	86, 378, 388
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	113, 226
TasI	AATT	3 cut(s)	239, 338, 493
TauI	GCSGC	2 cut(s)	29, 63
TfiI	GAWTC	2 cut(s)	91, 223
TscAI	CASTG	2 cut(s)	222, 357
TseI	GCWGC	1 cut(s)	284
TspGWI	ACGGA	3 cut(s)	67, 183, 187
TspRI	CASTG	2 cut(s)	222, 357
XapI	RAATTY	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	2 cut(s)	238, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.