Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010558

Physical Location & Seq

Genomic Coordinates Reverse (-)

10621540 .. 10623693

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1137900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTGGGTCCAGCCCCTTCCAGTGGTCTTGACGGTGAAGCCATGGAGCTCTCCTCACGGCGGCAGCCGCACAACCGCCTCTCTTGTTTCCCAGAATCCCAATATTCCATCTGCATCGACGCAGCAACTGCCGATACTCCCAAAACCCACTTTCAATTCAAGGACTCCATCCTCCCAAGTCCCAAACGCAACCGCTGCTATCTTCTTCTTCCTCCTCCTCTGCTATTACTCCGTCCGCACAAACCGTCAAGCTCAGCGAATTCGATCCACCGCCGAGTTGGGCCTTCTCTCTCTCCTCTTCGTCCTCTCCACGGATTCTGCGGCGGTTTTCTCCGTCGCTATACTTTGCATTCTAACAATAAACGCTATGAGAAGATTGGCAGCTTCAGTGGACAAACTATCCAATGTGGTGTCCCGGGAGGTGCCCGGAATGCTTTCTTCTCTCAAACTCTCCGGCGTTGAGATCAACAACTTGGCCAAGCAGCTTGCCGCTCTCAGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

17.97

Weight (kDa)

10.37

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21731 FvH4_4g21731 FvH4_4g21731
malus_domestica	MD13G1137900.v1.1 MD16G1133700.v1.1
pyrus_communis	pycom13g12000 pycom16g11810
rosa_chinensis	RchiOBHm_Chr4g0427931 RchiOBHm_Chr4g0427961
rosa_laevigata	RLG00000007197 RLG00000007199
rosa_multiflora	Rmu_sc0000066.1_g000010 Rmu_sc0000066.1_g000012 Rmu_sc0009221.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369600
rosa_rugosa	Rorug04G0220600
rosa_samantha	Rh4AG277800 Rh4AG278000 Rh4CG299000 Rh4CG299200
rosa_wichuraiana	Rw4G024130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AccBSI	CCGCTC	1 cut(s)	491
AciI	CCGC	9 cut(s)	60, 67, 75, 192, 235, 270, 320, 323, 489
AclWI	GGATC	1 cut(s)	258
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	369
AfiI	CCNNNNNNNGG	3 cut(s)	22, 59, 310
AgsI	TTSAA	2 cut(s)	154, 159
AluBI	AGCT	4 cut(s)	48, 251, 383, 484
AluI	AGCT	4 cut(s)	48, 251, 383, 484
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	258
AlwNI	CAGNNNCTG	2 cut(s)	127, 501
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	2 cut(s)	280, 474
ApeKI	GCWGC	5 cut(s)	63, 121, 194, 380, 481
ApoI	RAATTY	1 cut(s)	258
Asp700I	GAANNNNTTC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	7, 280
AsuC2I	CCSGG	3 cut(s)	415, 416, 426
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	426
BalI	TGGCCA	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	5 cut(s)	75, 133, 181, 392, 493
BccI	CCATC	2 cut(s)	115, 175
BceAI	ACGGC	1 cut(s)	73
BcnI	CCSGG	3 cut(s)	415, 416, 426
BisI	GCNGC	9 cut(s)	61, 64, 67, 122, 195, 321, 381, 482, 489
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	9 cut(s)	62, 65, 68, 123, 196, 322, 382, 483, 490
Bme1390I	CCNGG	3 cut(s)	415, 416, 426
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	7, 280
BmiI	GGNNCC	2 cut(s)	8, 423
BmrFI	CCNGG	3 cut(s)	415, 416, 426
BmsI	GCATC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuMI	CCSGG	3 cut(s)	415, 416, 426
BsaJI	CCNNGG	3 cut(s)	41, 309, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 59, 310
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	41, 309, 414
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	3 cut(s)	22, 59, 310
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	4 cut(s)	42, 203, 206, 284
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	5 cut(s)	75, 133, 181, 392, 493
BshFI	GGCC	2 cut(s)	282, 476
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	3 cut(s)	415, 426, 453
BslFI	GGGAC	2 cut(s)	164, 397
BslI	CCNNNNNNNGG	3 cut(s)	22, 59, 310
BsmFI	GGGAC	2 cut(s)	164, 397
BsmI	GAATGC	2 cut(s)	348, 435
BsnI	GGCC	2 cut(s)	282, 476
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	2 cut(s)	50, 426
Bsp143I	GATC	2 cut(s)	263, 462
Bsp1720I	GCTNAGC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	9 cut(s)	60, 67, 75, 192, 235, 270, 320, 323, 489
BspANI	GGCC	2 cut(s)	282, 476
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	8, 423
BspPI	GGATC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	491
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	41, 309, 414
BssMI	GATC	2 cut(s)	263, 462
BssT1I	CCWWGG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	34, 245
Bst6I	CTCTTC	1 cut(s)	302
BstAPI	GCANNNNNTGC	2 cut(s)	127, 194
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	2 cut(s)	252, 494
BstDSI	CCRYGG	2 cut(s)	41, 309
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	2 cut(s)	266, 465
BstMBI	GATC	2 cut(s)	263, 462
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 127, 194, 430
BstSCI	CCNGG	3 cut(s)	413, 414, 424
BstSLI	GKGCMC	1 cut(s)	426
BstV1I	GCAGC	5 cut(s)	75, 133, 181, 392, 493
BsuRI	GGCC	2 cut(s)	282, 476
BtgI	CCRYGG	2 cut(s)	41, 309
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	27, 393
Cac8I	GCNNGC	1 cut(s)	486
CaiI	CAGNNNCTG	2 cut(s)	127, 501
Cfr13I	GGNCC	2 cut(s)	7, 280
Cfr9I	CCCGGG	1 cut(s)	414
CseI	GACGC	1 cut(s)	127
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	9 cut(s)	13, 40, 48, 66, 251, 282, 383, 476, 484
CviKI_1	RGCY	9 cut(s)	13, 40, 48, 66, 251, 282, 383, 476, 484
DdeI	CTNAG	2 cut(s)	252, 494
DpnI	GATC	2 cut(s)	265, 464
DpnII	GATC	2 cut(s)	263, 462
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	45
FaiI	YATR	3 cut(s)	43, 341, 368
FaqI	GGGAC	2 cut(s)	164, 397
FatI	CATG	1 cut(s)	41
Fnu4HI	GCNGC	9 cut(s)	61, 64, 67, 122, 195, 321, 381, 482, 489
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	9 cut(s)	61, 64, 67, 122, 195, 321, 381, 482, 489
GluI	GCNGC	9 cut(s)	61, 64, 67, 122, 195, 321, 381, 482, 489
HaeIII	GGCC	2 cut(s)	282, 476
HapII	CCGG	3 cut(s)	415, 426, 453
HgaI	GACGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	45
HinfI	GANTC	3 cut(s)	94, 163, 314
HpaII	CCGG	3 cut(s)	415, 426, 453
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	2 cut(s)	121, 338
HpyAV	CCTTC	2 cut(s)	26, 293
HpyCH4III	ACNGT	2 cut(s)	34, 245
HpyCH4V	TGCA	2 cut(s)	113, 348
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 127, 194, 430
HpyF3I	CTNAG	2 cut(s)	252, 494
Hsp92II	CATG	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	263, 462
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	6 cut(s)	23, 33, 104, 428, 439, 466
Lsp1109I	GCAGC	5 cut(s)	75, 133, 181, 392, 493
LweI	GCATC	1 cut(s)	122
MalI	GATC	2 cut(s)	265, 464
MbiI	CCGCTC	1 cut(s)	491
MboI	GATC	2 cut(s)	263, 462
MboII	GAAGA	6 cut(s)	193, 196, 199, 289, 384, 429
MhlI	GDGCHC	2 cut(s)	50, 426
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	2 cut(s)	154, 258
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	9 cut(s)	63, 88, 181, 221, 224, 227, 305, 314, 412
Mox20I	TGGCCA	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	3 cut(s)	415, 426, 453
MspR9I	CCNGG	3 cut(s)	415, 416, 426
Mva1269I	GAATGC	2 cut(s)	348, 435
MwoI	GCNNNNNNNGC	4 cut(s)	66, 127, 194, 430
NciI	CCSGG	3 cut(s)	415, 416, 426
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	263, 462
NlaIII	CATG	1 cut(s)	45
NlaIV	GGNNCC	2 cut(s)	8, 423
NmeAIII	GCCGAG	1 cut(s)	298
PctI	GAATGC	2 cut(s)	348, 435
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	2 cut(s)	94, 314
PkrI	GCNGC	9 cut(s)	62, 65, 68, 123, 196, 322, 382, 483, 490
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	8, 423
PspPI	GGNCC	2 cut(s)	7, 280
PstNI	CAGNNNCTG	2 cut(s)	127, 501
SacI	GAGCTC	1 cut(s)	50
SatI	GCNGC	9 cut(s)	61, 64, 67, 122, 195, 321, 381, 482, 489
Sau3AI	GATC	2 cut(s)	263, 462
Sau96I	GGNCC	2 cut(s)	7, 280
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	3 cut(s)	415, 416, 426
SduI	GDGCHC	2 cut(s)	50, 426
SetI	ASST	5 cut(s)	50, 253, 385, 423, 486
SfaNI	GCATC	1 cut(s)	122
SinI	GGWCC	1 cut(s)	7
SmaI	CCCGGG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	154, 258
SsiI	CCGC	9 cut(s)	60, 67, 75, 192, 235, 270, 320, 323, 489
SspI	AATATT	1 cut(s)	103
SstI	GAGCTC	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	413, 414, 424
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	34, 245
TaqI	TCGA	2 cut(s)	116, 262
TasI	AATT	2 cut(s)	154, 258
TauI	GCSGC	4 cut(s)	63, 69, 323, 491
TfiI	GAWTC	2 cut(s)	94, 314
TscAI	CASTG	2 cut(s)	27, 393
TseI	GCWGC	5 cut(s)	63, 121, 194, 380, 481
TspGWI	ACGGA	3 cut(s)	220, 322, 326
TspMI	CCCGGG	1 cut(s)	414
TspRI	CASTG	2 cut(s)	27, 393
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmaI	CCCGGG	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.