Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010558

Physical Location & Seq

Genomic Coordinates Reverse (-)

14511777 .. 14512583

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007199

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCGGGTCAGTTGGTTCCGGTAGCCGTGACGTTGAAGCCGGCAATCCCTTTTCACGGCCGCCGGAGAGCTTTCTCCGTCGTGTCCCGGAAACTGAATACTCCATCTTTATCGAAGTTGCAACTACCAAATATCCCATCCTCCCAAACACAACCCCTGCTATCTTCTTCTTCTTCTTCTTCTTCCTCTGCAACTGCTCCGTCCGTCCAAGTCGTCAAAGCTCTGCGGATTCGACCCAGTCCCGAATTGGGCCTTGCCTCTCTCCTCTTCGTCCTCTCCACGGCTTTTGCTGCGCTTTTCTCCCTTGCTATATTTTCCATTCCAACTATCAATGCTTTGAGAAAATTGGCAATTTCAGTGGAGAAGCTATCCCATGTGGTCTCCGAGGAGGTACCTGGAACTCTGCTTTCTTTGAAACTCTCTGGCCTTGAGGTCAATGATTTAACCAAACAGCTTACCGGTATCAGGAAAATGGTGTCCGCAGCTAGGTGGGGGAAGAATTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

17.94

Weight (kDa)

11.54

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21731 FvH4_4g21731 FvH4_4g21731
malus_domestica	MD13G1137900.v1.1 MD16G1133700.v1.1
pyrus_communis	pycom13g12000 pycom16g11810
rosa_chinensis	RchiOBHm_Chr4g0427931 RchiOBHm_Chr4g0427961
rosa_laevigata	RLG00000007197 RLG00000007199
rosa_multiflora	Rmu_sc0000066.1_g000010 Rmu_sc0000066.1_g000012 Rmu_sc0009221.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369600
rosa_rugosa	Rorug04G0220600
rosa_samantha	Rh4AG277800 Rh4AG278000 Rh4CG299000 Rh4CG299200
rosa_wichuraiana	Rw4G024130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	391
AciI	CCGC	3 cut(s)	61, 226, 480
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	499
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	5 cut(s)	56, 248, 280, 465, 486
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	3 cut(s)	37, 415, 504
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	5 cut(s)	71, 221, 367, 454, 485
AluI	AGCT	5 cut(s)	71, 221, 367, 454, 485
Alw26I	GTCTC	1 cut(s)	385
AoxI	GGCC	3 cut(s)	58, 250, 424
ApeKI	GCWGC	2 cut(s)	290, 482
ApoI	RAATTY	1 cut(s)	499
AsiGI	ACCGGT	1 cut(s)	458
Asp718I	GGTACC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	277, 494
BccI	CCATC	2 cut(s)	112, 145
BceAI	ACGGC	3 cut(s)	11, 73, 297
BciT130I	CCWGG	1 cut(s)	396
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	1 cut(s)	486
BisI	GCNGC	3 cut(s)	61, 291, 483
BlsI	GCNGC	3 cut(s)	62, 292, 484
Bme1390I	CCNGG	2 cut(s)	88, 396
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	2 cut(s)	18, 393
BmrFI	CCNGG	2 cut(s)	88, 396
BmrI	ACTGGG	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	279, 384
BsaWI	WCCGGW	2 cut(s)	19, 458
Bsc4I	CCNNNNNNNGG	5 cut(s)	56, 248, 280, 465, 486
Bse118I	RCCGGY	2 cut(s)	40, 458
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	279, 384
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	5 cut(s)	56, 248, 280, 465, 486
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	2 cut(s)	254, 401
BseX3I	CGGCCG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	277, 494
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	60, 252, 426
BshNI	GGYRCC	1 cut(s)	391
BshTI	ACCGGT	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	61
BsiSI	CCGG	5 cut(s)	20, 41, 64, 88, 459
BslFI	GGGAC	2 cut(s)	70, 225
BslI	CCNNNNNNNGG	5 cut(s)	56, 248, 280, 465, 486
BsmAI	GTCTC	1 cut(s)	385
BsmFI	GGGAC	2 cut(s)	70, 225
BsnI	GGCC	3 cut(s)	60, 252, 426
Bso31I	GGTCTC	1 cut(s)	385
BspACI	CCGC	3 cut(s)	61, 226, 480
BspANI	GGCC	3 cut(s)	60, 252, 426
BspLI	GGNNCC	2 cut(s)	18, 393
BspT107I	GGYRCC	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	385
BsrFI	RCCGGY	2 cut(s)	40, 458
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	2 cut(s)	40, 458
BssECI	CCNNGG	2 cut(s)	279, 384
Bst2UI	CCWGG	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	385
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	86, 394
BstV1I	GCAGC	2 cut(s)	277, 494
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	60, 252, 426
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	2 cut(s)	40, 458
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	392
CspAI	ACCGGT	1 cut(s)	458
CspCI	CAANNNNNGTGG	4 cut(s)	268, 303, 339, 374
CviAII	CATG	1 cut(s)	374
CviQI	GTAC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	58
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EclXI	CGGCCG	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	385
Eco52I	CGGCCG	1 cut(s)	58
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	394
FaeI	CATG	1 cut(s)	377
FaiI	YATR	2 cut(s)	311, 375
FaqI	GGGAC	2 cut(s)	70, 225
FatI	CATG	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	61, 291, 483
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	61, 291, 483
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	3 cut(s)	61, 291, 483
HaeIII	GGCC	3 cut(s)	60, 252, 426
HapII	CCGG	5 cut(s)	20, 41, 64, 88, 459
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	5 cut(s)	20, 41, 64, 88, 459
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	2 cut(s)	242, 466
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	121, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	395
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	2 cut(s)	277, 494
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	28
MboII	GAAGA	9 cut(s)	156, 159, 162, 165, 168, 171, 174, 259, 508
MluCI	AATT	4 cut(s)	245, 344, 351, 499
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	8 cut(s)	151, 196, 268, 275, 284, 379, 382, 424
MroNI	GCCGGC	1 cut(s)	40
MseI	TTAA	1 cut(s)	443
MspI	CCGG	5 cut(s)	20, 41, 64, 88, 459
MspR9I	CCNGG	2 cut(s)	88, 396
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	290
NaeI	GCCGGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	88
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	2 cut(s)	18, 393
NmuCI	GTSAC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	229
PflFI	GACNNNGTC	1 cut(s)	237
PfoI	TCCNGGA	1 cut(s)	86
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	3 cut(s)	62, 292, 484
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	18, 393
PspPI	GGNCC	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	237
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	3 cut(s)	61, 291, 483
Sau96I	GGNCC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	88, 396
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	4 cut(s)	245, 344, 351, 499
SsiI	CCGC	3 cut(s)	61, 226, 480
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	86, 394
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	113, 232
TasI	AATT	4 cut(s)	245, 344, 351, 499
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	290, 482
Tsp45I	GTSAC	1 cut(s)	28
TspGWI	ACGGA	3 cut(s)	67, 189, 193
TspRI	CASTG	1 cut(s)	363
Tth111I	GACNNNGTC	1 cut(s)	237
XapI	RAATTY	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.