RchiOBHm_Chr4g0427961

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010558
Physical Location & Seq
Forward (+)
53065146 .. 53066634
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39687

Sequence Viewer

Length: 501 bp
ATGTCGGGTCAGTTGTTTCAAGTGGCCGCGACGTTGAAGCCGGCAATCCCTTTTCACGGCGGCCGGAGAGATTTCTCCGTCGTGTCCCGGAATCTGTATACTCCATCTCTATCGAAGTTGCAACTACCAAATATCCCATCCTCCCAAACACAACCCCTGCTTTCTTCTTGTTCTTCCTCTGTAACTTCTCCGTCCGTACAACTCCTCAGAGCACTGCACATTCGACCCACACCCGAATTGGGCCTTGCCTCTCTCCTCTTCGTCCTCTTCACGGCTTTTGCTGCACTTTTCTCCCTTGCTATATTTTCCATTCCAACTATCAATGCTTTGAGAAAATTAGCAACTTCAGTGGACAAGCTATCCCATGTGGTCTCCCAGGAGGTACCTGGAACTCTGCTTTCTCTGAAACTCTCTGGCATTGAGGTCAATGATTTAACCAAACAGCTTACCAGTATCAGGAAAATGATTTCTGCAACTGGCTGGGGGAAGAATTCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

17.83

Weight (kDa)

10.55

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 382
AccB1I GGYRCC 1 cut(s) 382
AccI GTMKAC 1 cut(s) 98
AccII CGCG 1 cut(s) 29
AciI CCGC 2 cut(s) 27, 60
AcoI YGGCCR 2 cut(s) 24, 61
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 2 cut(s) 198, 384
AfiI CCNNNNNNNGG 4 cut(s) 56, 239, 271, 456
AgsI TTSAA 2 cut(s) 20, 37
AjnI CCWGG 2 cut(s) 375, 385
AluBI AGCT 2 cut(s) 358, 445
AluI AGCT 2 cut(s) 358, 445
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 376
AoxI GGCC 3 cut(s) 24, 61, 241
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 490
Asp718I GGTACC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 494
BanI GGYRCC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 112, 145
BceAI ACGGC 2 cut(s) 73, 288
BciT130I CCWGG 2 cut(s) 377, 387
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 376
BisI GCNGC 3 cut(s) 27, 61, 282
BlsI GCNGC 3 cut(s) 28, 62, 283
Bme1390I CCNGG 3 cut(s) 88, 377, 387
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 3 cut(s) 88, 377, 387
Bpu14I TTCGAA 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 375
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 239, 271, 456
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 450, 481
BseBI CCWGG 2 cut(s) 377, 387
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 4 cut(s) 56, 239, 271, 456
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 2 cut(s) 450, 481
BseRI GAGGAG 2 cut(s) 194, 245
BseX3I CGGCCG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 1 cut(s) 480
BsgI GTGCAG 2 cut(s) 200, 267
Bsh1236I CGCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 3 cut(s) 26, 63, 243
BshNI GGYRCC 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 3 cut(s) 41, 64, 88
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 4 cut(s) 56, 239, 271, 456
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 3 cut(s) 26, 63, 243
Bso31I GGTCTC 1 cut(s) 376
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 214
BspACI CCGC 2 cut(s) 27, 60
BspANI GGCC 3 cut(s) 26, 63, 243
BspCNI CTCAG 1 cut(s) 219
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 384
BspT104I TTCGAA 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 2 cut(s) 450, 481
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 375
BssNAI GTATAC 1 cut(s) 99
Bst1107I GTATAC 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 377, 387
Bst6I CTCTTC 2 cut(s) 263, 272
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 29
BstMAI GTCTC 1 cut(s) 376
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 2 cut(s) 377, 387
BstSCI CCNGG 3 cut(s) 86, 375, 385
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 268
BstZ17I GTATAC 1 cut(s) 99
BstZI CGGCCG 1 cut(s) 61
BsuRI GGCC 3 cut(s) 26, 63, 243
BtsCI GGATG 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 2 cut(s) 212, 354
Cac8I GCNNGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 197, 383
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 1 cut(s) 365
CviJI RGCY 8 cut(s) 26, 40, 63, 243, 275, 358, 445, 480
CviKI_1 RGCY 8 cut(s) 26, 40, 63, 243, 275, 358, 445, 480
CviQI GTAC 2 cut(s) 197, 383
DdeI CTNAG 1 cut(s) 206
EaeI YGGCCR 2 cut(s) 24, 61
EagI CGGCCG 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 263, 272
EarI CTCTTC 2 cut(s) 263, 272
EclXI CGGCCG 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 376
Eco52I CGGCCG 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 375, 385
FaeI CATG 1 cut(s) 368
FaiI YATR 3 cut(s) 99, 302, 366
FaqI GGGAC 1 cut(s) 70
FatI CATG 1 cut(s) 364
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 3 cut(s) 27, 61, 282
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 3 cut(s) 27, 61, 282
GluI GCNGC 3 cut(s) 27, 61, 282
GsaI CCCAGC 1 cut(s) 484
HaeIII GGCC 3 cut(s) 26, 63, 243
HapII CCGG 3 cut(s) 41, 64, 88
Hin1II CATG 1 cut(s) 368
HinfI GANTC 1 cut(s) 91
HpaII CCGG 3 cut(s) 41, 64, 88
Hpy166II GTNNAC 2 cut(s) 99, 352
Hpy188I TCNGA 2 cut(s) 209, 405
Hpy188III TCNNGA 1 cut(s) 457
Hpy8I GTNNAC 2 cut(s) 99, 352
Hpy99I CGWCG 2 cut(s) 34, 83
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 4 cut(s) 121, 217, 284, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 1 cut(s) 368
KpnI GGTACC 1 cut(s) 386
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 268
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 181
MboII GAAGA 5 cut(s) 156, 165, 250, 259, 499
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 3 cut(s) 236, 335, 490
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 8 cut(s) 151, 187, 215, 259, 266, 275, 373, 415
MroNI GCCGGC 1 cut(s) 40
MseI TTAA 1 cut(s) 434
MspI CCGG 3 cut(s) 41, 64, 88
MspR9I CCNGG 3 cut(s) 88, 377, 387
MvaI CCWGG 2 cut(s) 377, 387
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 281
NaeI GCCGGC 1 cut(s) 42
NciI CCSGG 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 1 cut(s) 384
NspV TTCGAA 1 cut(s) 494
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 86
PkrI GCNGC 3 cut(s) 28, 62, 283
Psp6I CCWGG 2 cut(s) 375, 385
PspFI CCCAGC 1 cut(s) 480
PspGI CCWGG 2 cut(s) 375, 385
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 241
RsaI GTAC 2 cut(s) 198, 384
RsaNI GTAC 2 cut(s) 197, 383
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 3 cut(s) 27, 61, 282
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 88, 377, 387
SduI GDGCHC 1 cut(s) 214
SetI ASST 6 cut(s) 35, 360, 384, 388, 426, 447
SfuI TTCGAA 1 cut(s) 494
Sse9I AATT 3 cut(s) 236, 335, 490
SsiI CCGC 2 cut(s) 27, 60
StyD4I CCNGG 3 cut(s) 86, 375, 385
TaiI ACGT 1 cut(s) 35
TaqI TCGA 3 cut(s) 113, 223, 494
TasI AATT 3 cut(s) 236, 335, 490
TauI GCSGC 2 cut(s) 29, 63
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 2 cut(s) 219, 354
TseI GCWGC 1 cut(s) 281
TspGWI ACGGA 3 cut(s) 67, 180, 184
TspRI CASTG 2 cut(s) 219, 354
XapI RAATTY 1 cut(s) 490
XcmI CCANNNNNNNNNTGG 2 cut(s) 235, 383
XmiI GTMKAC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.