Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010558

Physical Location & Seq

Genomic Coordinates Forward (+)

55920806 .. 55921591

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG299000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCGGGTCAGTTGGTTCCGGTAGCCGTGACGTTGAAGCCGGCAATCCCTTTTCACGGCGGCCGGAGAGCTTTCTCCGTCGTGTCCCGGAATCTGAATACTCCATCTTCATCGAAGTTGCAACTACCAAATATCCCATCCTCCCAAACACGACCTCTGCTTTCTTCTTCTTCCTCTGTAACTGCTCCGGTCGTCAAAGCTCTGCGGATTCGACCCAGTCCCGAATTGGGTCTTGCCTCTCTCCTCTTCGTCCTCTCCACGGCTTTTGCTGCACTTTTCTCCCTTGCTATATTTTCCATTCCAACTATCAATGCTTTGAGAAAATTGGCAACTTCAGTGGACAAGCTATCCCATGTGGTCTCCGAGGAGGTACCTGGAACTCTGCTTTCTCTGAAACTCTCTGGCCTTGAGGTCAATGATTTAACCAAACAGCTTACCGGTATCAGGAAAATGGTGTCCGCAGCTCGGTGGGGGAAGAATTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.17

Weight (kDa)

11.53

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21731 FvH4_4g21731 FvH4_4g21731
malus_domestica	MD13G1137900.v1.1 MD16G1133700.v1.1
pyrus_communis	pycom13g12000 pycom16g11810
rosa_chinensis	RchiOBHm_Chr4g0427931 RchiOBHm_Chr4g0427961
rosa_laevigata	RLG00000007197 RLG00000007199
rosa_multiflora	Rmu_sc0000066.1_g000010 Rmu_sc0000066.1_g000012 Rmu_sc0009221.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369600
rosa_rugosa	Rorug04G0220600
rosa_samantha	Rh4AG277800 Rh4AG278000 Rh4CG299000 Rh4CG299200
rosa_wichuraiana	Rw4G024130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	370
AciI	CCGC	3 cut(s)	60, 205, 459
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	5 cut(s)	56, 227, 259, 444, 465
AgeI	ACCGGT	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	37, 483
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	5 cut(s)	71, 200, 346, 433, 464
AluI	AGCT	5 cut(s)	71, 200, 346, 433, 464
Alw26I	GTCTC	1 cut(s)	364
AoxI	GGCC	2 cut(s)	61, 403
ApeKI	GCWGC	2 cut(s)	269, 461
ApoI	RAATTY	1 cut(s)	478
AsiGI	ACCGGT	1 cut(s)	437
Asp718I	GGTACC	1 cut(s)	370
AsuC2I	CCSGG	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	256, 473
BccI	CCATC	2 cut(s)	112, 145
BceAI	ACGGC	3 cut(s)	11, 73, 276
BciT130I	CCWGG	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	364
BisI	GCNGC	3 cut(s)	61, 270, 462
BlsI	GCNGC	3 cut(s)	62, 271, 463
Bme1390I	CCNGG	2 cut(s)	88, 375
BmiI	GGNNCC	2 cut(s)	18, 372
BmrFI	CCNGG	2 cut(s)	88, 375
BmrI	ACTGGG	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	258, 363
BsaWI	WCCGGW	3 cut(s)	19, 187, 437
Bsc4I	CCNNNNNNNGG	5 cut(s)	56, 227, 259, 444, 465
Bse118I	RCCGGY	2 cut(s)	40, 437
Bse1I	ACTGG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	258, 363
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	5 cut(s)	56, 227, 259, 444, 465
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	2 cut(s)	233, 380
BseX3I	CGGCCG	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	256, 473
BsgI	GTGCAG	1 cut(s)	255
Bsh1285I	CGRYCG	2 cut(s)	64, 192
BshFI	GGCC	2 cut(s)	63, 405
BshNI	GGYRCC	1 cut(s)	370
BshTI	ACCGGT	1 cut(s)	437
BsiEI	CGRYCG	2 cut(s)	64, 192
BsiSI	CCGG	6 cut(s)	20, 41, 64, 88, 188, 438
BslFI	GGGAC	2 cut(s)	70, 204
BslI	CCNNNNNNNGG	5 cut(s)	56, 227, 259, 444, 465
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	2 cut(s)	70, 204
BsnI	GGCC	2 cut(s)	63, 405
Bso31I	GGTCTC	1 cut(s)	364
BspACI	CCGC	3 cut(s)	60, 205, 459
BspANI	GGCC	2 cut(s)	63, 405
BspLI	GGNNCC	2 cut(s)	18, 372
BspT107I	GGYRCC	1 cut(s)	370
BspTNI	GGTCTC	1 cut(s)	364
BsrFI	RCCGGY	2 cut(s)	40, 437
BsrI	ACTGG	1 cut(s)	216
BssAI	RCCGGY	2 cut(s)	40, 437
BssECI	CCNNGG	2 cut(s)	258, 363
Bst2UI	CCWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	364
BstMCI	CGRYCG	2 cut(s)	64, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	2 cut(s)	86, 373
BstV1I	GCAGC	2 cut(s)	256, 473
BstZI	CGGCCG	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	63, 405
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	42
Cfr10I	RCCGGY	2 cut(s)	40, 437
Csp6I	GTAC	1 cut(s)	371
CspAI	ACCGGT	1 cut(s)	437
CspCI	CAANNNNNGTGG	4 cut(s)	247, 282, 318, 353
CviAII	CATG	1 cut(s)	353
CviQI	GTAC	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	61
EagI	CGGCCG	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EclXI	CGGCCG	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	364
Eco52I	CGGCCG	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	373
FaeI	CATG	1 cut(s)	356
FaiI	YATR	2 cut(s)	290, 354
FaqI	GGGAC	2 cut(s)	70, 204
FatI	CATG	1 cut(s)	352
Fnu4HI	GCNGC	3 cut(s)	61, 270, 462
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	61, 270, 462
GluI	GCNGC	3 cut(s)	61, 270, 462
HaeIII	GGCC	2 cut(s)	63, 405
HapII	CCGG	6 cut(s)	20, 41, 64, 88, 188, 438
Hin1II	CATG	1 cut(s)	356
HinfI	GANTC	2 cut(s)	91, 208
HpaII	CCGG	6 cut(s)	20, 41, 64, 88, 188, 438
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	3 cut(s)	96, 364, 393
Hpy188III	TCNNGA	2 cut(s)	221, 445
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	121, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	356
KpnI	GGTACC	1 cut(s)	374
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	2 cut(s)	256, 473
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	28, 178
MboII	GAAGA	6 cut(s)	99, 156, 159, 162, 238, 487
MluCI	AATT	3 cut(s)	224, 323, 478
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	9 cut(s)	151, 165, 184, 247, 254, 263, 358, 361, 403
MroNI	GCCGGC	1 cut(s)	40
MseI	TTAA	1 cut(s)	422
MspI	CCGG	6 cut(s)	20, 41, 64, 88, 188, 438
MspR9I	CCNGG	2 cut(s)	88, 375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	269
NaeI	GCCGGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	88
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	18, 372
NmuCI	GTSAC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	91, 208
PflFI	GACNNNGTC	1 cut(s)	216
PfoI	TCCNGGA	1 cut(s)	86
PinAI	ACCGGT	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	62, 271, 463
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	18, 372
PsyI	GACNNNGTC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	3 cut(s)	61, 270, 462
ScrFI	CCNGG	2 cut(s)	88, 375
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	224, 323, 478
SsiI	CCGC	3 cut(s)	60, 205, 459
StyD4I	CCNGG	2 cut(s)	86, 373
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	113, 211
TasI	AATT	3 cut(s)	224, 323, 478
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	91, 208
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	269, 461
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	342
Tth111I	GACNNNGTC	1 cut(s)	216
XapI	RAATTY	1 cut(s)	478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.