pycom16g11810

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010558
Physical Location & Seq
Reverse (-)
8228487 .. 8229394
908 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g11810.1

Sequence Viewer

Length: 579 bp
ATGACGTTTGGAGACAGACATAGACACGCAGAGAGTTGTCGAGAGATGTGGGTTCAGCCGCTTGCAGTGGTCATGGCGGTCAAGCCGCGGAGCTCTCCTCACGGCGGCAGCCGCAGAGCCGCCTCTGTAGTTGCCCAGAAATCCAATATTCCATCTGTAGATTCTGTGACGCAGCAACGGCTGATACTCCCAAACTCCACTTCCAAATCAACGACTCCATCCTCCCAAACGCAACCGCTGCTATTTTCTTCTTCCTCTGCTATTACTCCGTCCGTACGCACCGTCAATGCTCTGCGGATTCGACCCACCGCCGAGTTGGGCCTCCTCTCTGTCCTCTTAGTCCTCTCCGCGGCTTTTGCGGCAGTTTTCTCCGTCGCCATACTTTGCATTCCTACGATAAACGCTATGAGAAGATTGGCAGTTGCAGTGGGAAAACTATCCAATGTGGTGTCCCGGGAGGTGCCCGGAACGTTATATTCTCTCAAACTCTCCAGCGTTGAGATCAACGACTTGGCCAAGCAGCTTGCTGCTCTCAGGGAACAGATTTCCACAACTGGGTTTGGCAAGAATTCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.48

Weight (kDa)

10.87

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AccII CGCG 2 cut(s) 88, 350
AclI AACGTT 1 cut(s) 470
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 1 cut(s) 568
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 3 cut(s) 104, 349, 555
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AluBI AGCT 2 cut(s) 93, 523
AluI AGCT 2 cut(s) 93, 523
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 6
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 2 cut(s) 319, 513
ApeKI GCWGC 5 cut(s) 108, 172, 238, 520, 527
ApoI RAATTY 1 cut(s) 568
AspS9I GGNCC 1 cut(s) 319
AsuC2I CCSGG 3 cut(s) 454, 455, 465
AvaI CYCGRG 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 465
BalI TGGCCA 1 cut(s) 515
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 5 cut(s) 120, 184, 225, 514, 532
BccI CCATC 2 cut(s) 160, 226
BceAI ACGGC 2 cut(s) 118, 194
BcnI CCSGG 3 cut(s) 454, 455, 465
BcoDI GTCTC 1 cut(s) 6
BfmI CTRYAG 2 cut(s) 126, 156
Bme1390I CCNGG 3 cut(s) 454, 455, 465
BmeT110I CYCGRG 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 3 cut(s) 454, 455, 465
BmrI ACTGGG 1 cut(s) 564
BmuI ACTGGG 1 cut(s) 564
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpmI CTGGAG 1 cut(s) 475
BpuMI CCSGG 3 cut(s) 454, 455, 465
BsaJI CCNNGG 3 cut(s) 86, 348, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 349, 555
Bse1I ACTGG 1 cut(s) 559
BseDI CCNNGG 3 cut(s) 86, 348, 453
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 3 cut(s) 104, 349, 555
BseMII CTCAG 1 cut(s) 547
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 2 cut(s) 87, 314
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 5 cut(s) 120, 184, 225, 514, 532
Bsh1236I CGCG 2 cut(s) 88, 350
BshFI GGCC 2 cut(s) 321, 515
BshNI GGYRCC 1 cut(s) 460
BsiHKAI GWGCWC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 2 cut(s) 454, 465
BsiWI CGTACG 1 cut(s) 274
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 3 cut(s) 104, 349, 555
BsmAI GTCTC 1 cut(s) 6
BsmFI GGGAC 1 cut(s) 436
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 2 cut(s) 321, 515
BsoBI CYCGRG 1 cut(s) 453
Bsp1286I GDGCHC 2 cut(s) 95, 465
Bsp143I GATC 1 cut(s) 501
BspANI GGCC 2 cut(s) 321, 515
BspCNI CTCAG 1 cut(s) 546
BspFNI CGCG 2 cut(s) 88, 350
BspLI GGNNCC 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 460
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 3 cut(s) 86, 348, 453
BssMI GATC 1 cut(s) 501
Bst4CI ACNGT 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 63, 525
BstDEI CTNAG 2 cut(s) 337, 533
BstDSI CCRYGG 2 cut(s) 86, 348
BstF5I GGATG 1 cut(s) 218
BstFNI CGCG 2 cut(s) 88, 350
BstKTI GATC 1 cut(s) 504
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 1 cut(s) 501
BstMWI GCNNNNNNNGC 5 cut(s) 111, 178, 238, 356, 359
BstSCI CCNGG 3 cut(s) 452, 453, 463
BstSFI CTRYAG 2 cut(s) 126, 156
BstSLI GKGCMC 1 cut(s) 465
BstUI CGCG 2 cut(s) 88, 350
BstV1I GCAGC 5 cut(s) 120, 184, 225, 514, 532
BsuRI GGCC 2 cut(s) 321, 515
BtgI CCRYGG 2 cut(s) 86, 348
BtsCI GGATG 1 cut(s) 218
BtsI GCAGTG 2 cut(s) 72, 432
BtsIMutI CAGTG 2 cut(s) 72, 432
Cac8I GCNNGC 2 cut(s) 63, 525
Cfr13I GGNCC 1 cut(s) 319
Cfr42I CCGCGG 2 cut(s) 89, 351
Cfr9I CCCGGG 1 cut(s) 453
CseI GACGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 275
CviAII CATG 1 cut(s) 73
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 2 cut(s) 337, 533
DpnI GATC 1 cut(s) 503
DpnII GATC 1 cut(s) 501
EaeI YGGCCR 1 cut(s) 513
Ecl136II GAGCTC 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 95
FaeI CATG 1 cut(s) 76
FaiI YATR 5 cut(s) 21, 74, 380, 407, 475
FaqI GGGAC 1 cut(s) 436
FatI CATG 1 cut(s) 72
FokI GGATG 1 cut(s) 205
FriOI GRGCYC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 475
HaeIII GGCC 2 cut(s) 321, 515
HapII CCGG 2 cut(s) 454, 465
HgaI GACGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 76
HinfI GANTC 3 cut(s) 161, 214, 298
HpaII CCGG 2 cut(s) 454, 465
Hpy188I TCNGA 1 cut(s) 574
Hpy188III TCNNGA 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 377
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 2 cut(s) 5, 470
HpyCH4V TGCA 3 cut(s) 65, 387, 425
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 178, 238, 356, 359
HpyF3I CTNAG 2 cut(s) 337, 533
HpySE526I ACGT 2 cut(s) 5, 470
Hsp92II CATG 1 cut(s) 76
KspI CCGCGG 2 cut(s) 89, 351
Kzo9I GATC 1 cut(s) 501
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 6 cut(s) 149, 467, 478, 505, 520, 540
Lsp1109I GCAGC 5 cut(s) 120, 184, 225, 514, 532
MaeII ACGT 2 cut(s) 5, 470
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 503
MboI GATC 1 cut(s) 501
MboII GAAGA 3 cut(s) 240, 243, 423
MhlI GDGCHC 2 cut(s) 95, 465
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 1 cut(s) 568
MluNI TGGCCA 1 cut(s) 515
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 9 cut(s) 108, 133, 232, 265, 332, 335, 344, 353, 451
Mox20I TGGCCA 1 cut(s) 515
MscI TGGCCA 1 cut(s) 515
Msp20I TGGCCA 1 cut(s) 515
MspA1I CMGCKG 3 cut(s) 88, 238, 350
MspI CCGG 2 cut(s) 454, 465
MspR9I CCNGG 3 cut(s) 454, 455, 465
Mva1269I GAATGC 1 cut(s) 387
MvnI CGCG 2 cut(s) 88, 350
MwoI GCNNNNNNNGC 5 cut(s) 111, 178, 238, 356, 359
NciI CCSGG 3 cut(s) 454, 455, 465
NdeII GATC 1 cut(s) 501
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 462
NmeAIII GCCGAG 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 166
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 161, 298
Pfl23II CGTACG 1 cut(s) 274
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 95
Psp1406I AACGTT 1 cut(s) 470
PspLI CGTACG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 1 cut(s) 319
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SacI GAGCTC 1 cut(s) 95
SacII CCGCGG 2 cut(s) 89, 351
Sau3AI GATC 1 cut(s) 501
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 3 cut(s) 454, 455, 465
SduI GDGCHC 2 cut(s) 95, 465
SetI ASST 5 cut(s) 8, 95, 462, 473, 525
SfcI CTRYAG 2 cut(s) 126, 156
Sfr303I CCGCGG 2 cut(s) 89, 351
SgrBI CCGCGG 2 cut(s) 89, 351
SmaI CCCGGG 1 cut(s) 455
Sse9I AATT 1 cut(s) 568
SspI AATATT 1 cut(s) 148
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 3 cut(s) 452, 453, 463
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 2 cut(s) 8, 473
TaqI TCGA 2 cut(s) 40, 301
TasI AATT 1 cut(s) 568
TauI GCSGC 7 cut(s) 61, 88, 108, 114, 122, 353, 362
TfiI GAWTC 2 cut(s) 161, 298
TscAI CASTG 2 cut(s) 72, 432
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 5 cut(s) 108, 172, 238, 520, 527
Tsp45I GTSAC 1 cut(s) 166
TspGWI ACGGA 3 cut(s) 258, 262, 361
TspMI CCCGGG 1 cut(s) 453
TspRI CASTG 2 cut(s) 72, 432
XapI RAATTY 1 cut(s) 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XmaI CCCGGG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.